Np mrd loader

Record Information
Version2.0
Created at2021-06-20 20:55:24 UTC
Updated at2021-06-30 00:10:47 UTC
NP-MRD IDNP0038159
Secondary Accession NumbersNone
Natural Product Identification
Common Nameradicicol
Provided ByJEOL DatabaseJEOL Logo
DescriptionRadicicol is also known as monorden. Radicicol is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. radicicol is found in Floropilus chiversii, Fusarium neocosmosporiellum, Fusarium tenuicristatum, Humicola fuscoatra, Monocillium nordinii and Pochonia chlamydosporia var. chlamydosporia. radicicol was first documented in 1999 (PMID: 16232632). Based on a literature review a small amount of articles have been published on Radicicol (PMID: 16920739) (PMID: 18667483) (PMID: 20093793) (PMID: 20961859).
Structure
Thumb
Synonyms
ValueSource
MonordenChEBI
KF9-aMeSH
5-chloro-6-(7,8-Epoxy-10-hydroxy-2-oxo-3,5-undecadienyl)-beta-resorcylic acid mu-lactoneMeSH
MonordeneMeSH
Chemical FormulaC18H17ClO6
Average Mass364.7770 Da
Monoisotopic Mass364.07137 Da
IUPAC Name(4R,6R,8R,9Z,11E)-16-chloro-17,19-dihydroxy-4-methyl-3,7-dioxatricyclo[13.4.0.0^{6,8}]nonadeca-1(19),9,11,15,17-pentaene-2,13-dione
Traditional Name(4R,6R,8R,9Z,11E)-16-chloro-17,19-dihydroxy-4-methyl-3,7-dioxatricyclo[13.4.0.0^{6,8}]nonadeca-1(19),9,11,15,17-pentaene-2,13-dione
CAS Registry NumberNot Available
SMILES
[H]OC1=C([H])C(O[H])=C2C(=C1Cl)C([H])([H])C(=O)\C([H])=C(/[H])\C(\[H])=C([H])/[C@@]1([H])O[C@]1([H])C([H])([H])[C@]([H])(OC2=O)C([H])([H])[H]
InChI Identifier
InChI=1S/C18H17ClO6/c1-9-6-15-14(25-15)5-3-2-4-10(20)7-11-16(18(23)24-9)12(21)8-13(22)17(11)19/h2-5,8-9,14-15,21-22H,6-7H2,1H3/b4-2+,5-3-/t9-,14-,15-/m1/s1
InChI KeyWYZWZEOGROVVHK-GTMNPGAYSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Floropilus chiversiiLOTUS Database
Fusarium neocosmosporiellumLOTUS Database
Fusarium tenuicristatumLOTUS Database
Humicola fuscoatraLOTUS Database
Monocillium nordiniiLOTUS Database
Pochonia chlamydosporiaJEOL database
    • Shinonaga, H., et al, Tetrahedron 65, 3446 (2009)
Species Where Detected
Species NameSourceReference
Chaetomium chiversiiKNApSAcK Database
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as hydroxybenzoic acid derivatives. These are compounds containing a hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxyl and a hydroxyl groups.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct ParentHydroxybenzoic acid derivatives
Alternative Parents
Substituents
  • Dihydroxybenzoic acid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Aryl chloride
  • Aryl halide
  • Vinylogous acid
  • Carboxylic acid ester
  • Ketone
  • Cyclic ketone
  • Lactone
  • Carboxylic acid derivative
  • Dialkyl ether
  • Oxirane
  • Ether
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Organic oxide
  • Carbonyl group
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxygen compound
  • Organohalogen compound
  • Organochloride
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.22ALOGPS
logP3.68ChemAxon
logS-3.3ALOGPS
pKa (Strongest Acidic)7.02ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area96.36 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity93.56 m³·mol⁻¹ChemAxon
Polarizability34.62 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDDB03758
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00040142
Chemspider ID20137057
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkRadicicol
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID556075
Good Scents IDNot Available
References
General References
  1. Fujita K, Irie M, Ping X, Taniguchi M: Antifungal activity of radicicol against Mucor flavus IFO 9560. J Biosci Bioeng. 1999;88(4):380-6. doi: 10.1016/s1389-1723(99)80214-x. [PubMed:16232632 ]
  2. Corbett KD, Berger JM: Structural basis for topoisomerase VI inhibition by the anti-Hsp90 drug radicicol. Nucleic Acids Res. 2006;34(15):4269-77. doi: 10.1093/nar/gkl567. Epub 2006 Aug 18. [PubMed:16920739 ]
  3. Ramirez V, Mejia-Vilet JM, Hernandez D, Gamba G, Bobadilla NA: Radicicol, a heat shock protein 90 inhibitor, reduces glomerular filtration rate. Am J Physiol Renal Physiol. 2008 Oct;295(4):F1044-51. doi: 10.1152/ajprenal.90278.2008. Epub 2008 Jul 30. [PubMed:18667483 ]
  4. Sonoda H, Prachasilchai W, Kondo H, Yokota-Ikeda N, Oshikawa S, Ito K, Ikeda M: The protective effect of radicicol against renal ischemia--reperfusion injury in mice. J Pharmacol Sci. 2010;112(2):242-6. doi: 10.1254/jphs.09259sc. Epub 2010 Jan 22. [PubMed:20093793 ]
  5. Zhou H, Qiao K, Gao Z, Vederas JC, Tang Y: Insights into radicicol biosynthesis via heterologous synthesis of intermediates and analogs. J Biol Chem. 2010 Dec 31;285(53):41412-21. doi: 10.1074/jbc.M110.183574. Epub 2010 Oct 20. [PubMed:20961859 ]
  6. Shinonaga, H., et al. (2009). Shinonaga, H., et al, Tetrahedron 65, 3446 (2009). Tetrahedron.