NP-MRD: Showing NP-Card for pharicinin B (NP0038121)

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Record Information

Version

2.0

Created at

2021-06-20 20:53:46 UTC

Updated at

2021-06-30 00:10:44 UTC

NP-MRD ID

NP0038121

Secondary Accession Numbers

None

Natural Product Identification

Common Name

pharicinin B

Provided By

JEOL Database JEOL Logo

Description

Pharicinin B belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D. pharicinin B is found in Isodon pharicus. pharicinin B was first documented in 2017 (PMID: 28426216). Based on a literature review very few articles have been published on Pharicinin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202122533D          

 60 63  0  0  0  0            999 V2000
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    3.6500   -0.8282   -0.4685 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3962   -2.0956   -2.0251 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306202122533D          

 60 63  0  0  0  0            999 V2000
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    0.9744    0.3963    2.3626 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8944   -2.8118    0.3672 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535   -2.7035    1.0617 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3871   -3.7276   -0.7376 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3040   -2.6354   -2.8421 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.3455   -1.6329    1.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8992   -1.5575    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -2.6833    0.5236 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.6682    0.8639    1.6148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4027    1.6337    0.0455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5334    0.4272   -0.6758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5566    0.4934    1.8414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0367   -1.1593    1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3563    1.2366    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5633    1.1900    2.7559 H   0  0  0  0  0  0  0  0  0  0  0  0
  5 11  1  0  0  0  0
 10  8  1  0  0  0  0
  8  7  1  0  0  0  0
 16 17  1  0  0  0  0
 16 15  1  0  0  0  0
 10 11  1  0  0  0  0
 19 20  1  0  0  0  0
 18 19  1  0  0  0  0
 22 23  1  1  0  0  0
 19 21  2  0  0  0  0
 11 12  1  0  0  0  0
 17 22  1  0  0  0  0
 13 14  1  1  0  0  0
 13  6  1  0  0  0  0
 22 24  1  0  0  0  0
 25 26  1  0  0  0  0
 25 56  1  6  0  0  0
 26 27  1  0  0  0  0
  6 31  1  6  0  0  0
 27  5  1  0  0  0  0
 10  2  1  0  0  0  0
  6  5  1  0  0  0  0
  2  1  2  3  0  0  0
 17 18  1  0  0  0  0
 22 25  1  0  0  0  0
  5  3  1  6  0  0  0
  2  3  1  0  0  0  0
 13 15  1  0  0  0  0
  8  9  1  0  0  0  0
 13 25  1  0  0  0  0
 27 28  1  0  0  0  0
  6  7  1  0  0  0  0
  3  4  2  0  0  0  0
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 26 57  1  0  0  0  0
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  8 34  1  6  0  0  0
  7 32  1  0  0  0  0
  7 33  1  0  0  0  0
 11 37  1  1  0  0  0
 10 36  1  1  0  0  0
 23 50  1  0  0  0  0
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 12 38  1  0  0  0  0
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 24 53  1  0  0  0  0
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  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  9 35  1  0  0  0  0
 28 60  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0038121

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])[C@]2([H])C(=C([H])[H])C(=O)[C@]11[C@]([H])(O[H])C([H])([H])[C@]3([H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]([H])(OC(=O)C([H])([H])[H])C([H])([H])C([H])([H])[C@@]3(C([H])([H])[H])[C@]1([H])C([H])([H])[C@]2([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C22H32O6/c1-10-17-12(24)8-14-21(5)7-6-16(28-11(2)23)20(3,4)13(21)9-15(25)22(14,18(10)26)19(17)27/h12-17,19,24-25,27H,1,6-9H2,2-5H3/t12-,13+,14-,15+,16-,17+,19+,21+,22-/m0/s1

> <INCHI_KEY>
NDIYYMUEZOALQL-FUXGSBNMSA-N

> <FORMULA>
C22H32O6

> <MOLECULAR_WEIGHT>
392.492

> <EXACT_MASS>
392.21988875

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
41.98269654023981

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,4S,6S,9R,10S,12S,13R,16R)-2,12,16-trihydroxy-5,5,9-trimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-6-yl acetate

> <ALOGPS_LOGP>
1.23

> <JCHEM_LOGP>
0.9422733073333327

> <ALOGPS_LOGS>
-2.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.500149961413435

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.840714267328433

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8971316188730203

> <JCHEM_POLAR_SURFACE_AREA>
104.06000000000002

> <JCHEM_REFRACTIVITY>
101.58309999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.13e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,4S,6S,9R,10S,12S,13R,16R)-2,12,16-trihydroxy-5,5,9-trimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-6-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 60 63  0  0  0  0  0  0  0  0999 V2000
    4.8845   -0.4433   -0.8018 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0182   -4.1699   -0.9608 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0033   -1.8493    0.8719 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6005   -1.5288    2.1304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9867   -1.6291   -0.9116 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.1679    2.0031   -3.8818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5081    0.0359   -3.5060 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2910   -0.5752   -0.0227 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8203   -1.6767    0.9176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8500    0.7644    0.5397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7195   -0.4951   -0.1005 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0276   -0.2631    1.2521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4044    0.2345    1.0592 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9744    0.3963    2.3626 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3093   -3.0809   -2.0835 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7679   -4.7094   -0.6509 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8944   -2.8118    0.3672 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535   -2.7035    1.0617 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4631   -0.8915   -2.9136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3040   -2.6354   -2.8421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4786   -2.8814   -1.7539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5984   -1.9626   -3.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9541   -0.9536   -1.3767 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1821    2.8229   -3.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8934    2.2214   -4.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1782    1.9062   -4.3352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3455   -1.6329    1.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8992   -1.5575    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -2.6833    0.5236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9356    0.8249    0.3966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6682    0.8639    1.6148 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.5334    0.4272   -0.6758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5566    0.4934    1.8414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0367   -1.1593    1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3563    1.2366    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5633    1.1900    2.7559 H   0  0  0  0  0  0  0  0  0  0  0  0
  5 11  1  0
 10  8  1  0
  8  7  1  0
 16 17  1  0
 16 15  1  0
 10 11  1  0
 19 20  1  0
 18 19  1  0
 22 23  1  1
 19 21  2  0
 11 12  1  0
 17 22  1  0
 13 14  1  1
 13  6  1  0
 22 24  1  0
 25 26  1  0
 25 56  1  6
 26 27  1  0
  6 31  1  6
 27  5  1  0
 10  2  1  0
  6  5  1  0
  2  1  2  3
 17 18  1  0
 22 25  1  0
  5  3  1  6
  2  3  1  0
 13 15  1  0
  8  9  1  0
 13 25  1  0
 27 28  1  0
  6  7  1  0
  3  4  2  0
 20 47  1  0
 20 48  1  0
 20 49  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  1
 15 42  1  0
 15 43  1  0
 26 57  1  0
 26 58  1  0
 27 59  1  6
  8 34  1  6
  7 32  1  0
  7 33  1  0
 11 37  1  1
 10 36  1  1
 23 50  1  0
 23 51  1  0
 23 52  1  0
 12 38  1  0
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 24 53  1  0
 24 54  1  0
 24 55  1  0
  1 29  1  0
  1 30  1  0
  9 35  1  0
 28 60  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       4.885  -0.443  -0.802  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.650  -0.828  -0.469  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.486   0.100  -0.320  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.509   1.276  -0.648  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.265  -0.681   0.173  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.519  -1.156  -1.128  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.396  -2.096  -2.025  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.526  -2.891  -1.339  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.018  -4.170  -0.961  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.128  -2.194  -0.115  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.003  -1.849   0.872  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.600  -1.529   2.130  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.987  -1.629  -0.912  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.027  -3.009  -0.222  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.692  -1.769  -2.295  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.213  -1.924  -2.212  0.00  0.00           C+0
HETATM   17  C   UNK     0      -3.874  -0.770  -1.457  0.00  0.00           C+0
HETATM   18  O   UNK     0      -3.650   0.446  -2.214  0.00  0.00           O+0
HETATM   19  C   UNK     0      -4.543   0.722  -3.203  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.168   2.003  -3.882  0.00  0.00           C+0
HETATM   21  O   UNK     0      -5.508   0.036  -3.506  0.00  0.00           O+0
HETATM   22  C   UNK     0      -3.291  -0.575  -0.023  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.820  -1.677   0.918  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.850   0.764   0.540  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.720  -0.495  -0.101  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.028  -0.263   1.252  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.404   0.235   1.059  0.00  0.00           C+0
HETATM   28  O   UNK     0       0.974   0.396   2.363  0.00  0.00           O+0
HETATM   29  H   UNK     0       5.106   0.601  -1.006  0.00  0.00           H+0
HETATM   30  H   UNK     0       5.701  -1.154  -0.866  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.412  -0.245  -1.741  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.882  -1.441  -2.764  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.780  -2.780  -2.614  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.309  -3.081  -2.083  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.768  -4.709  -0.651  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.894  -2.812   0.367  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.353  -2.704   1.062  0.00  0.00           H+0
HETATM   38  H   UNK     0       2.037  -0.845   2.556  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.015  -3.465  -0.239  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.387  -3.728  -0.738  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.717  -2.976   0.823  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.463  -0.892  -2.914  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.304  -2.635  -2.842  0.00  0.00           H+0
HETATM   44  H   UNK     0      -3.479  -2.881  -1.754  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.598  -1.963  -3.238  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.954  -0.954  -1.377  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.182   2.823  -3.159  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.893   2.221  -4.671  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.178   1.906  -4.335  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.345  -1.633   1.903  0.00  0.00           H+0
HETATM   51  H   UNK     0      -4.899  -1.558   1.079  0.00  0.00           H+0
HETATM   52  H   UNK     0      -3.692  -2.683   0.524  0.00  0.00           H+0
HETATM   53  H   UNK     0      -4.936   0.825   0.397  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.668   0.864   1.615  0.00  0.00           H+0
HETATM   55  H   UNK     0      -3.403   1.634   0.046  0.00  0.00           H+0
HETATM   56  H   UNK     0      -1.533   0.427  -0.676  0.00  0.00           H+0
HETATM   57  H   UNK     0      -1.557   0.493   1.841  0.00  0.00           H+0
HETATM   58  H   UNK     0      -1.037  -1.159   1.881  0.00  0.00           H+0
HETATM   59  H   UNK     0       0.356   1.237   0.614  0.00  0.00           H+0
HETATM   60  H   UNK     0       0.563   1.190   2.756  0.00  0.00           H+0
CONECT    1    2   29   30                                                  
CONECT    2   10    1    3                                                  
CONECT    3    5    2    4                                                  
CONECT    4    3                                                            
CONECT    5   11   27    6    3                                             
CONECT    6   13   31    5    7                                             
CONECT    7    8    6   32   33                                             
CONECT    8   10    7    9   34                                             
CONECT    9    8   35                                                       
CONECT   10    8   11    2   36                                             
CONECT   11    5   10   12   37                                             
CONECT   12   11   38                                                       
CONECT   13   14    6   15   25                                             
CONECT   14   13   39   40   41                                             
CONECT   15   16   13   42   43                                             
CONECT   16   17   15   44   45                                             
CONECT   17   16   22   18   46                                             
CONECT   18   19   17                                                       
CONECT   19   20   18   21                                                  
CONECT   20   19   47   48   49                                             
CONECT   21   19                                                            
CONECT   22   23   17   24   25                                             
CONECT   23   22   50   51   52                                             
CONECT   24   22   53   54   55                                             
CONECT   25   26   56   22   13                                             
CONECT   26   25   27   57   58                                             
CONECT   27   26    5   28   59                                             
CONECT   28   27   60                                                       
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    6                                                            
CONECT   32    7                                                            
CONECT   33    7                                                            
CONECT   34    8                                                            
CONECT   35    9                                                            
CONECT   36   10                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   14                                                            
CONECT   40   14                                                            
CONECT   41   14                                                            
CONECT   42   15                                                            
CONECT   43   15                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   17                                                            
CONECT   47   20                                                            
CONECT   48   20                                                            
CONECT   49   20                                                            
CONECT   50   23                                                            
CONECT   51   23                                                            
CONECT   52   23                                                            
CONECT   53   24                                                            
CONECT   54   24                                                            
CONECT   55   24                                                            
CONECT   56   25                                                            
CONECT   57   26                                                            
CONECT   58   26                                                            
CONECT   59   27                                                            
CONECT   60   28                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  126    0
END

RDKit          3D

60 63  0  0  0  0  0  0  0  0999 V2000
    4.8845   -0.4433   -0.8018 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6500   -0.8282   -0.4685 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4859    0.0996   -0.3203 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5091    1.2763   -0.6478 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2653   -0.6814    0.1733 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5190   -1.1561   -1.1283 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3962   -2.0956   -2.0251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5258   -2.8908   -1.3391 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0182   -4.1699   -0.9608 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1279   -2.1943   -0.1147 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0033   -1.8493    0.8719 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6005   -1.5288    2.1304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9867   -1.6291   -0.9116 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -3.6498    0.4455   -2.2140 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.2910   -0.5752   -0.0227 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8203   -1.6767    0.9176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8500    0.7644    0.5397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7195   -0.4951   -0.1005 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0276   -0.2631    1.2521 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4044    0.2345    1.0592 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9744    0.3963    2.3626 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1060    0.6011   -1.0060 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7011   -1.1538   -0.8659 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4115   -0.2446   -1.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8818   -1.4414   -2.7641 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7800   -2.7800   -2.6140 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3093   -3.0809   -2.0835 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7679   -4.7094   -0.6509 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8944   -2.8118    0.3672 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3535   -2.7035    1.0617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367   -0.8449    2.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0154   -3.4648   -0.2387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3871   -3.7276   -0.7376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7167   -2.9762    0.8230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4631   -0.8915   -2.9136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3040   -2.6354   -2.8421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4786   -2.8814   -1.7539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5984   -1.9626   -3.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9541   -0.9536   -1.3767 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1821    2.8229   -3.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8934    2.2214   -4.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1782    1.9062   -4.3352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3455   -1.6329    1.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8992   -1.5575    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -2.6833    0.5236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9356    0.8249    0.3966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6682    0.8639    1.6148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4027    1.6337    0.0455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5334    0.4272   -0.6758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5566    0.4934    1.8414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0367   -1.1593    1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3563    1.2366    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5633    1.1900    2.7559 H   0  0  0  0  0  0  0  0  0  0  0  0
  5 11  1  0
 10  8  1  0
  8  7  1  0
 16 17  1  0
 16 15  1  0
 10 11  1  0
 19 20  1  0
 18 19  1  0
 22 23  1  1
 19 21  2  0
 11 12  1  0
 17 22  1  0
 13 14  1  1
 13  6  1  0
 22 24  1  0
 25 26  1  0
 25 56  1  6
 26 27  1  0
  6 31  1  6
 27  5  1  0
 10  2  1  0
  6  5  1  0
  2  1  2  3
 17 18  1  0
 22 25  1  0
  5  3  1  6
  2  3  1  0
 13 15  1  0
  8  9  1  0
 13 25  1  0
 27 28  1  0
  6  7  1  0
  3  4  2  0
 20 47  1  0
 20 48  1  0
 20 49  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  1
 15 42  1  0
 15 43  1  0
 26 57  1  0
 26 58  1  0
 27 59  1  6
  8 34  1  6
  7 32  1  0
  7 33  1  0
 11 37  1  1
 10 36  1  1
 23 50  1  0
 23 51  1  0
 23 52  1  0
 12 38  1  0
 14 39  1  0
 14 40  1  0
 14 41  1  0
 24 53  1  0
 24 54  1  0
 24 55  1  0
  1 29  1  0
  1 30  1  0
  9 35  1  0
 28 60  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₂O₆

Average Mass

392.4920 Da

Monoisotopic Mass

392.21989 Da

IUPAC Name

(1R,2R,4S,6S,9R,10S,12S,13R,16R)-2,12,16-trihydroxy-5,5,9-trimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-6-yl acetate

Traditional Name

(1R,2R,4S,6S,9R,10S,12S,13R,16R)-2,12,16-trihydroxy-5,5,9-trimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-6-yl acetate

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])[C@]2([H])C(=C([H])[H])C(=O)[C@]11[C@]([H])(O[H])C([H])([H])[C@]3([H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]([H])(OC(=O)C([H])([H])[H])C([H])([H])C([H])([H])[C@@]3(C([H])([H])[H])[C@]1([H])C([H])([H])[C@]2([H])O[H]

InChI Identifier

InChI=1S/C22H32O6/c1-10-17-12(24)8-14-21(5)7-6-16(28-11(2)23)20(3,4)13(21)9-15(25)22(14,18(10)26)19(17)27/h12-17,19,24-25,27H,1,6-9H2,2-5H3/t12-,13+,14-,15+,16-,17+,19+,21+,22-/m0/s1

InChI Key

NDIYYMUEZOALQL-FUXGSBNMSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, C₅D₅N, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon pharicus	JEOL database	Zhao, Y., et al, Tetrahedron Lett. 50, 2019 (2009)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Kaurane diterpenoids

Alternative Parents

Substituents

Kaurane diterpenoid
Cyclic alcohol
Secondary alcohol
Ketone
Carboxylic acid ester
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.23	ALOGPS
logP	0.94	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	13.84	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	101.58 m³·mol⁻¹	ChemAxon
Polarizability	41.98 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102287785

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

He C, Hu J, Wu Y, Ding H: Total Syntheses of Highly Oxidized ent-Kaurenoids Pharicin A, Pharicinin B, 7-O-Acetylpseurata C, and Pseurata C: A [5+2] Cascade Approach. J Am Chem Soc. 2017 May 3;139(17):6098-6101. doi: 10.1021/jacs.7b02746. Epub 2017 Apr 20. [PubMed:28426216 ]
Zhao, Y., et al. (2009). Zhao, Y., et al, Tetrahedron Lett. 50, 2019 (2009). Tetrahedron Lett.

Showing NP-Card for pharicinin B (NP0038121)

MOL for NP0038121 (pharicinin B)

3D MOL for NP0038121 (pharicinin B)

3D SDF for NP0038121 (pharicinin B)

3D-SDF for NP0038121 (pharicinin B)

PDB for NP0038121 (pharicinin B)

3D PDB for NP0038121 (pharicinin B)

SMILES for NP0038121 (pharicinin B)

INCHI for NP0038121 (pharicinin B)

Structure for NP0038121 (pharicinin B)

3D Structure for NP0038121 (pharicinin B)