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Record Information
Version2.0
Created at2021-06-20 20:47:11 UTC
Updated at2021-06-30 00:10:31 UTC
NP-MRD IDNP0037984
Secondary Accession NumbersNone
Natural Product Identification
Common Namezamamidine C
Provided ByJEOL DatabaseJEOL Logo
DescriptionZamamidine C belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. zamamidine C is found in Amphimedon sp. zamamidine C was first documented in 2009 (Yamada, M., et al.). Based on a literature review very few articles have been published on Zamamidine C.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC49H58N6O
Average Mass747.0440 Da
Monoisotopic Mass746.46721 Da
IUPAC Name(1S,2R,4R,5Z,12R,13S,16Z,22R)-25-[(1R)-2-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]-11,22-diazapentacyclo[11.11.2.1^{2,22}.0^{2,12}.0^{4,11}]heptacosa-5,16,25-trien-13-ol
Traditional Name(1S,2R,4R,5Z,12R,13S,16Z,22R)-25-[(1R)-2-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]-11,22-diazapentacyclo[11.11.2.1^{2,22}.0^{2,12}.0^{4,11}]heptacosa-5,16,25-trien-13-ol
CAS Registry NumberNot Available
SMILES
[H]O[C@@]12C([H])=C([C@@]3([H])N(C([H])([H])C([H])([H])C4=NC([H])=C([H])C5=C4N([H])C4=C5C([H])=C([H])C([H])=C4[H])C([H])([H])C([H])([H])C4=C3N([H])C3=C4C([H])=C([H])C([H])=C3[H])[C@]3([H])C([H])([H])C([H])([H])[N@](C([H])([H])[C@@]33C([H])([H])[C@]4([H])\C([H])=C([H])/C([H])([H])C([H])([H])C([H])([H])C([H])([H])N4[C@@]13[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])\C([H])=C([H])/C([H])([H])C2([H])[H]
InChI Identifier
InChI=1S/C49H58N6O/c56-49-24-12-4-1-2-5-13-26-53-28-22-40(48(33-53)31-34-15-7-3-6-14-27-55(34)47(48)49)39(32-49)46-45-38(36-17-9-11-19-42(36)52-45)21-29-54(46)30-23-43-44-37(20-25-50-43)35-16-8-10-18-41(35)51-44/h1,4,7-11,15-20,25,32,34,40,46-47,51-52,56H,2-3,5-6,12-14,21-24,26-31,33H2/b4-1-,15-7-/t34-,40-,46+,47+,48-,49-/m0/s1
InChI KeyWMXXFHJCNJVZDO-DFQDYZRISA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Amphimedon sp.JEOL database
    • Yamada, M., et al, Tetrahedron 65, 2313 (2009)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassHarmala alkaloids
Sub ClassNot Available
Direct ParentHarmala alkaloids
Alternative Parents
Substituents
  • Harman
  • Beta-carboline
  • Pyridoindole
  • Azaspirodecane
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Aralkylamine
  • Piperidine
  • Benzenoid
  • N-alkylpyrrolidine
  • Pyridine
  • Heteroaromatic compound
  • Pyrrole
  • Pyrrolidine
  • Tertiary alcohol
  • Tertiary aliphatic amine
  • Tertiary amine
  • Organoheterocyclic compound
  • Azacycle
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Amine
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.79ALOGPS
logP7.46ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)13.37ChemAxon
pKa (Strongest Basic)11.08ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area74.42 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity230.7 m³·mol⁻¹ChemAxon
Polarizability86.89 ųChemAxon
Number of Rings11ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID27024141
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound42596920
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yamada, M., et al. (2009). Yamada, M., et al, Tetrahedron 65, 2313 (2009). Tetrahedron.