NP-MRD: Showing NP-Card for ptychonolide (NP0037845)

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Record Information

Version

2.0

Created at

2021-06-20 20:40:32 UTC

Updated at

2021-06-30 00:10:18 UTC

NP-MRD ID

NP0037845

Secondary Accession Numbers

None

Natural Product Identification

Common Name

ptychonolide

Provided By

JEOL Database JEOL Logo

Description

Ptychonolide belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. ptychonolide is found in Ptychopetalum olacoides. ptychonolide was first documented in 2008 (PMID: 18821798). Based on a literature review very few articles have been published on ptychonolide (PMID: 21485268).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202122403D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306202122403D          

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  2 20  1  0  0  0  0
  6  7  1  0  0  0  0
 20 19  1  0  0  0  0
 14 13  1  0  0  0  0
 13 12  1  0  0  0  0
 12 11  2  0  0  0  0
 11 10  1  0  0  0  0
 19 18  1  0  0  0  0
  7 15  1  0  0  0  0
 18 22  1  0  0  0  0
 18 17  1  0  0  0  0
 17 15  1  0  0  0  0
  7 22  1  0  0  0  0
 15 16  2  0  0  0  0
  6  5  1  0  0  0  0
 22 23  1  0  0  0  0
  6 32  1  6  0  0  0
  4 28  1  0  0  0  0
  4 29  1  0  0  0  0
  3 27  1  0  0  0  0
  5 30  1  0  0  0  0
  5 31  1  0  0  0  0
 21 43  1  0  0  0  0
 21 44  1  0  0  0  0
 21 45  1  0  0  0  0
 19 41  1  0  0  0  0
 19 42  1  0  0  0  0
 18 40  1  1  0  0  0
 22 46  1  6  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
  8 33  1  0  0  0  0
  8 34  1  0  0  0  0
  9 35  1  0  0  0  0
  9 36  1  0  0  0  0
 14 39  1  0  0  0  0
 12 38  1  0  0  0  0
 11 37  1  0  0  0  0
 23 47  1  0  0  0  0
 23 48  1  0  0  0  0
 23 49  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0037845

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C1=C([H])C(=C([H])O1)C([H])([H])C([H])([H])[C@]12C(=O)O[C@]([H])(C([H])([H])[C@]3(C(=C([H])C([H])([H])C([H])([H])[C@]13[H])C([H])([H])[H])C([H])([H])[H])[C@@]2([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O3/c1-13-5-4-6-17-19(13,3)11-16-14(2)20(17,18(21)23-16)9-7-15-8-10-22-12-15/h5,8,10,12,14,16-17H,4,6-7,9,11H2,1-3H3/t14-,16-,17+,19+,20-/m1/s1

> <INCHI_KEY>
ZPVBIJINMBNDCY-WGLCMCTQSA-N

> <FORMULA>
C20H26O3

> <MOLECULAR_WEIGHT>
314.425

> <EXACT_MASS>
314.188194697

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
35.25608679858709

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,7R,9R,12S)-1-[2-(furan-3-yl)ethyl]-6,7,12-trimethyl-10-oxatricyclo[7.2.1.0^{2,7}]dodec-5-en-11-one

> <ALOGPS_LOGP>
4.96

> <JCHEM_LOGP>
4.433019407333332

> <ALOGPS_LOGS>
-4.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8758482844183453

> <JCHEM_POLAR_SURFACE_AREA>
39.44

> <JCHEM_REFRACTIVITY>
89.17689999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.25e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,7R,9R,12S)-1-[2-(furan-3-yl)ethyl]-6,7,12-trimethyl-10-oxatricyclo[7.2.1.0^{2,7}]dodec-5-en-11-one

> <JCHEM_VEBER_RULE>
1

$$$$

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
    2.8487   -2.4531   -0.8579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6206   -1.0173   -0.4660 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3190   -0.0243   -1.0554 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2034    1.4358   -0.7020 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1741    1.7749    0.3903 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0429    0.7350    0.3950 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2536    1.0891    1.2083 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7253    2.5507    1.0669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0807    2.9693   -0.3658 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5873    4.3707   -0.4284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8170    5.5654   -0.5034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7138    6.6067   -0.5397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9858    6.1373   -0.4944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9042    4.7846   -0.4259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0608    0.7236    2.6678 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3308    1.4582    3.5580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3658   -0.6083    2.8372 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7497   -1.1538    1.5689 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4691   -1.7113    0.8101 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6451   -0.7009    0.6831 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5430   -0.8001    1.9528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3349    0.0463    0.8433 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7538    0.3475    1.3467 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6722   -2.5557   -1.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1027   -3.0586    0.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9550   -2.8727   -1.3290 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0321   -0.2585   -1.8439 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1862    1.8203   -0.4066 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9214    1.9692   -1.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8035    2.7846    0.1906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6586    1.8266    1.3714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6850    0.7067   -0.6490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5896    2.7281    1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0441    3.2261    1.4644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8386    2.2976   -0.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2050    2.8863   -1.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2602    5.6556   -0.5246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6136    7.6817   -0.5942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8516    4.2653   -0.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4902   -1.9453    1.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8161   -2.6182    1.3216 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1276   -2.0236   -0.1851 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0575   -0.4866    2.8749 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4584   -0.2031    1.8665 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8696   -1.8351    2.1168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3990   -0.1280   -0.2376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1926    1.1955    0.8130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4068   -0.5149    1.1726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7816    0.5717    2.4179 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 21  1  1
  2  1  1  0
  6 20  1  0
  7  8  1  1
  4  3  1  0
  8  9  1  0
  4  5  1  0
  9 10  1  0
 10 14  2  0
  3  2  2  0
  2 20  1  0
  6  7  1  0
 20 19  1  0
 14 13  1  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 19 18  1  0
  7 15  1  0
 18 22  1  0
 18 17  1  0
 17 15  1  0
  7 22  1  0
 15 16  2  0
  6  5  1  0
 22 23  1  0
  6 32  1  6
  4 28  1  0
  4 29  1  0
  3 27  1  0
  5 30  1  0
  5 31  1  0
 21 43  1  0
 21 44  1  0
 21 45  1  0
 19 41  1  0
 19 42  1  0
 18 40  1  1
 22 46  1  6
  1 24  1  0
  1 25  1  0
  1 26  1  0
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
 14 39  1  0
 12 38  1  0
 11 37  1  0
 23 47  1  0
 23 48  1  0
 23 49  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       2.849  -2.453  -0.858  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.621  -1.017  -0.466  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.319  -0.024  -1.055  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.203   1.436  -0.702  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.174   1.775   0.390  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.043   0.735   0.395  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.254   1.089   1.208  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.725   2.551   1.067  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.081   2.969  -0.366  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.587   4.371  -0.428  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.817   5.565  -0.503  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.714   6.607  -0.540  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.986   6.137  -0.494  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.904   4.785  -0.426  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.061   0.724   2.668  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.331   1.458   3.558  0.00  0.00           O+0
HETATM   17  O   UNK     0      -0.366  -0.608   2.837  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.750  -1.154   1.569  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.469  -1.711   0.810  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.645  -0.701   0.683  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.543  -0.800   1.953  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.335   0.046   0.843  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.754   0.348   1.347  0.00  0.00           C+0
HETATM   24  H   UNK     0       3.672  -2.556  -1.573  0.00  0.00           H+0
HETATM   25  H   UNK     0       3.103  -3.059   0.018  0.00  0.00           H+0
HETATM   26  H   UNK     0       1.955  -2.873  -1.329  0.00  0.00           H+0
HETATM   27  H   UNK     0       4.032  -0.259  -1.844  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.186   1.820  -0.407  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.921   1.969  -1.619  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.804   2.785   0.191  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.659   1.827   1.371  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.685   0.707  -0.649  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.590   2.728   1.722  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.044   3.226   1.464  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.839   2.298  -0.784  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.205   2.886  -1.019  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.260   5.656  -0.525  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.614   7.682  -0.594  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.852   4.265  -0.381  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.490  -1.945   1.725  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.816  -2.618   1.322  0.00  0.00           H+0
HETATM   42  H   UNK     0       0.128  -2.024  -0.185  0.00  0.00           H+0
HETATM   43  H   UNK     0       2.058  -0.487   2.875  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.458  -0.203   1.867  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.870  -1.835   2.117  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.399  -0.128  -0.238  0.00  0.00           H+0
HETATM   47  H   UNK     0      -3.193   1.196   0.813  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.407  -0.515   1.173  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.782   0.572   2.418  0.00  0.00           H+0
CONECT    1    2   24   25   26                                             
CONECT    2    1    3   20                                                  
CONECT    3    4    2   27                                                  
CONECT    4    3    5   28   29                                             
CONECT    5    4    6   30   31                                             
CONECT    6   20    7    5   32                                             
CONECT    7    8    6   15   22                                             
CONECT    8    7    9   33   34                                             
CONECT    9    8   10   35   36                                             
CONECT   10    9   14   11                                                  
CONECT   11   12   10   37                                                  
CONECT   12   13   11   38                                                  
CONECT   13   14   12                                                       
CONECT   14   10   13   39                                                  
CONECT   15    7   17   16                                                  
CONECT   16   15                                                            
CONECT   17   18   15                                                       
CONECT   18   19   22   17   40                                             
CONECT   19   20   18   41   42                                             
CONECT   20   21    6    2   19                                             
CONECT   21   20   43   44   45                                             
CONECT   22   18    7   23   46                                             
CONECT   23   22   47   48   49                                             
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    3                                                            
CONECT   28    4                                                            
CONECT   29    4                                                            
CONECT   30    5                                                            
CONECT   31    5                                                            
CONECT   32    6                                                            
CONECT   33    8                                                            
CONECT   34    8                                                            
CONECT   35    9                                                            
CONECT   36    9                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   14                                                            
CONECT   40   18                                                            
CONECT   41   19                                                            
CONECT   42   19                                                            
CONECT   43   21                                                            
CONECT   44   21                                                            
CONECT   45   21                                                            
CONECT   46   22                                                            
CONECT   47   23                                                            
CONECT   48   23                                                            
CONECT   49   23                                                            
MASTER        0    0    0    0    0    0    0    0   49    0  104    0
END

RDKit          3D

49 52  0  0  0  0  0  0  0  0999 V2000
    2.8487   -2.4531   -0.8579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6206   -1.0173   -0.4660 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3190   -0.0243   -1.0554 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2034    1.4358   -0.7020 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1741    1.7749    0.3903 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0429    0.7350    0.3950 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2536    1.0891    1.2083 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7253    2.5507    1.0669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0807    2.9693   -0.3658 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5873    4.3707   -0.4284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8170    5.5654   -0.5034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7138    6.6067   -0.5397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9858    6.1373   -0.4944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9042    4.7846   -0.4259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0608    0.7236    2.6678 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3308    1.4582    3.5580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3658   -0.6083    2.8372 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7497   -1.1538    1.5689 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4691   -1.7113    0.8101 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6451   -0.7009    0.6831 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5430   -0.8001    1.9528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3349    0.0463    0.8433 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7538    0.3475    1.3467 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6722   -2.5557   -1.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1027   -3.0586    0.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9550   -2.8727   -1.3290 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0321   -0.2585   -1.8439 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1862    1.8203   -0.4066 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9214    1.9692   -1.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8035    2.7846    0.1906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6586    1.8266    1.3714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6850    0.7067   -0.6490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5896    2.7281    1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0441    3.2261    1.4644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8386    2.2976   -0.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2050    2.8863   -1.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2602    5.6556   -0.5246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6136    7.6817   -0.5942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8516    4.2653   -0.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4902   -1.9453    1.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8161   -2.6182    1.3216 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1276   -2.0236   -0.1851 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0575   -0.4866    2.8749 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4584   -0.2031    1.8665 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8696   -1.8351    2.1168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3990   -0.1280   -0.2376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1926    1.1955    0.8130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4068   -0.5149    1.1726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7816    0.5717    2.4179 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 21  1  1
  2  1  1  0
  6 20  1  0
  7  8  1  1
  4  3  1  0
  8  9  1  0
  4  5  1  0
  9 10  1  0
 10 14  2  0
  3  2  2  0
  2 20  1  0
  6  7  1  0
 20 19  1  0
 14 13  1  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 19 18  1  0
  7 15  1  0
 18 22  1  0
 18 17  1  0
 17 15  1  0
  7 22  1  0
 15 16  2  0
  6  5  1  0
 22 23  1  0
  6 32  1  6
  4 28  1  0
  4 29  1  0
  3 27  1  0
  5 30  1  0
  5 31  1  0
 21 43  1  0
 21 44  1  0
 21 45  1  0
 19 41  1  0
 19 42  1  0
 18 40  1  1
 22 46  1  6
  1 24  1  0
  1 25  1  0
  1 26  1  0
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
 14 39  1  0
 12 38  1  0
 11 37  1  0
 23 47  1  0
 23 48  1  0
 23 49  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₃

Average Mass

314.4250 Da

Monoisotopic Mass

314.18819 Da

IUPAC Name

(1S,2S,7R,9R,12S)-1-[2-(furan-3-yl)ethyl]-6,7,12-trimethyl-10-oxatricyclo[7.2.1.0^{2,7}]dodec-5-en-11-one

Traditional Name

(1S,2S,7R,9R,12S)-1-[2-(furan-3-yl)ethyl]-6,7,12-trimethyl-10-oxatricyclo[7.2.1.0^{2,7}]dodec-5-en-11-one

CAS Registry Number

Not Available

SMILES

[H]C1=C([H])C(=C([H])O1)C([H])([H])C([H])([H])[C@]12C(=O)O[C@]([H])(C([H])([H])[C@]3(C(=C([H])C([H])([H])C([H])([H])[C@]13[H])C([H])([H])[H])C([H])([H])[H])[C@@]2([H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H26O3/c1-13-5-4-6-17-19(13,3)11-16-14(2)20(17,18(21)23-16)9-7-15-8-10-22-12-15/h5,8,10,12,14,16-17H,4,6-7,9,11H2,1-3H3/t14-,16-,17+,19+,20-/m1/s1

InChI Key

ZPVBIJINMBNDCY-WGLCMCTQSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ptychopetalum olacoides	JEOL database	Tang, W., et al, J. Nat. Prod. 71, 1760 (2008)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

Oxepane
Gamma butyrolactone
Heteroaromatic compound
Oxolane
Furan
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.96	ALOGPS
logP	4.43	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	39.44 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	89.18 m³·mol⁻¹	ChemAxon
Polarizability	35.26 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24721100

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25135583

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Tang W, Harada K, Kubo M, Hioki H, Fukuyama Y: Eight new clerodane diterpenoids from the bark of Ptychopetalum olacoides. Nat Prod Commun. 2011 Mar;6(3):327-32. [PubMed:21485268 ]
Tang W, Hioki H, Harada K, Kubo M, Fukuyama Y: Clerodane diterpenoids with NGF-potentiating activity from Ptychopetalum olacoides. J Nat Prod. 2008 Oct;71(10):1760-3. doi: 10.1021/np8004002. Epub 2008 Sep 27. [PubMed:18821798 ]
Tang, W., et al. (2008). Tang, W., et al, J. Nat. Prod. 71, 1760 (2008). J. Nat. Prod..

Showing NP-Card for ptychonolide (NP0037845)

MOL for NP0037845 (ptychonolide)

3D MOL for NP0037845 (ptychonolide)

3D SDF for NP0037845 (ptychonolide)

3D-SDF for NP0037845 (ptychonolide)

PDB for NP0037845 (ptychonolide)

3D PDB for NP0037845 (ptychonolide)

SMILES for NP0037845 (ptychonolide)

INCHI for NP0037845 (ptychonolide)

Structure for NP0037845 (ptychonolide)

3D Structure for NP0037845 (ptychonolide)