| Record Information |
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| Version | 2.0 |
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| Created at | 2021-06-20 20:38:15 UTC |
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| Updated at | 2021-06-30 00:10:12 UTC |
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| NP-MRD ID | NP0037796 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | iriomoteolide-3a |
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| Provided By | JEOL Database |
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| Description | Iriomoteolide 3a belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. iriomoteolide-3a is found in Amphidinium sp. and Amphidinium sp. (strain HYA024). iriomoteolide-3a was first documented in 2008 (PMID: 18197690). Based on a literature review a significant number of articles have been published on Iriomoteolide 3a (PMID: 29780512) (PMID: 25234434) (PMID: 21541369) (PMID: 19928780) (PMID: 19813232). |
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| Structure | [H]O[C@@]([H])(C([H])([H])[C@]([H])(C(\[H])=C(/[H])C([H])([H])C(\[H])=C(/[H])C([H])([H])[H])C([H])([H])[H])[C@@]1([H])OC(=O)C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])\C([H])=C([H])/[C@]([H])(O[H])[C@@]([H])(O[H])\C([H])=C([H])/[C@]2([H])O[C@@]2([H])C1([H])[H] InChI=1S/C25H38O6/c1-4-5-6-7-9-17(2)14-21(28)23-16-24-22(30-24)13-12-20(27)19(26)11-8-10-18(3)15-25(29)31-23/h4-5,7-9,11-13,17-24,26-28H,6,10,14-16H2,1-3H3/b5-4+,9-7+,11-8-,13-12-/t17-,18-,19-,20-,21-,22-,23-,24-/m0/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C25H38O6 |
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| Average Mass | 434.5730 Da |
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| Monoisotopic Mass | 434.26684 Da |
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| IUPAC Name | (1S,3S,7S,9Z,11S,12S,13Z,15S)-11,12-dihydroxy-3-[(1S,3R,4E,7E)-1-hydroxy-3-methylnona-4,7-dien-1-yl]-7-methyl-4,16-dioxabicyclo[13.1.0]hexadeca-9,13-dien-5-one |
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| Traditional Name | (1S,3S,7S,9Z,11S,12S,13Z,15S)-11,12-dihydroxy-3-[(1S,3R,4E,7E)-1-hydroxy-3-methylnona-4,7-dien-1-yl]-7-methyl-4,16-dioxabicyclo[13.1.0]hexadeca-9,13-dien-5-one |
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| CAS Registry Number | Not Available |
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| SMILES | [H]O[C@@]([H])(C([H])([H])[C@]([H])(C(\[H])=C(/[H])C([H])([H])C(\[H])=C(/[H])C([H])([H])[H])C([H])([H])[H])[C@@]1([H])OC(=O)C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])\C([H])=C([H])/[C@]([H])(O[H])[C@@]([H])(O[H])\C([H])=C([H])/[C@]2([H])O[C@@]2([H])C1([H])[H] |
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| InChI Identifier | InChI=1S/C25H38O6/c1-4-5-6-7-9-17(2)14-21(28)23-16-24-22(30-24)13-12-20(27)19(26)11-8-10-18(3)15-25(29)31-23/h4-5,7-9,11-13,17-24,26-28H,6,10,14-16H2,1-3H3/b5-4+,9-7+,11-8-,13-12-/t17-,18-,19-,20-,21-,22-,23-,24-/m0/s1 |
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| InChI Key | LQBFGORJMLJPKT-ACOJDCDUSA-N |
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| Experimental Spectra |
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| | Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Predicted Spectra |
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| Not Available | | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | | Species Name | Source | Reference |
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| Amphidinium sp. | Protozoa | | | Amphidinium sp. (strain HYA024) | JEOL database | - Oguchi, K., et al, J. Org. Chem. 73, 1567 (2008)
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. |
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| Kingdom | Organic compounds |
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| Super Class | Phenylpropanoids and polyketides |
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| Class | Macrolides and analogues |
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| Sub Class | Not Available |
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| Direct Parent | Macrolides and analogues |
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| Alternative Parents | |
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| Substituents | - Macrolide
- Fatty alcohol
- Fatty acyl
- Secondary alcohol
- Carboxylic acid ester
- Lactone
- Oxacycle
- Carboxylic acid derivative
- Organoheterocyclic compound
- Monocarboxylic acid or derivatives
- Dialkyl ether
- Oxirane
- Ether
- Hydrocarbon derivative
- Organic oxygen compound
- Organic oxide
- Organooxygen compound
- Alcohol
- Carbonyl group
- Aliphatic heteropolycyclic compound
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| Molecular Framework | Aliphatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Unzue A, Cribiu R, Hoffman MM, Knehans T, Lafleur K, Caflisch A, Nevado C: Iriomoteolides: novel chemical tools to study actin dynamics. Chem Sci. 2018 Apr 3;9(15):3793-3802. doi: 10.1039/c7sc04286h. eCollection 2018 Apr 21. [PubMed:29780512 ]
- Kumar SM, Prasad KR: Enantiospecific formal total synthesis of iriomoteolide 3a. Chem Asian J. 2014 Dec;9(12):3431-9. doi: 10.1002/asia.201402593. Epub 2014 Sep 18. [PubMed:25234434 ]
- Zhang Y, Deng L, Zhao G: A stereoselective total synthesis of 7,8-O-isopropylidene iriomoteolide-3a. Org Biomol Chem. 2011 Jun 21;9(12):4518-26. doi: 10.1039/c0ob01253j. Epub 2011 May 3. [PubMed:21541369 ]
- Reddy CR, Dharmapuri G, Rao NN: Synthesis of the macrocyclic core of iriomoteolide 3a. Org Lett. 2009 Dec 17;11(24):5730-3. doi: 10.1021/ol9025183. [PubMed:19928780 ]
- Cribiu R, Jager C, Nevado C: Syntheses and biological evaluation of iriomoteolide 3a and analogues. Angew Chem Int Ed Engl. 2009;48(46):8780-3. doi: 10.1002/anie.200903379. [PubMed:19813232 ]
- Oguchi K, Tsuda M, Iwamoto R, Okamoto Y, Kobayashi J, Fukushi E, Kawabata J, Ozawa T, Masuda A, Kitaya Y, Omasa K: Iriomoteolide-3a, a cytotoxic 15-membered macrolide from a marine dinoflagellate amphidinium species. J Org Chem. 2008 Feb 15;73(4):1567-70. doi: 10.1021/jo702440s. Epub 2008 Jan 16. [PubMed:18197690 ]
- Oguchi, K., et al. (2008). Oguchi, K., et al, J. Org. Chem. 73, 1567 (2008). J. Org. Chem..
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