NP-MRD: Showing NP-Card for viteagnusin D (NP0037597)

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Record Information

Version

2.0

Created at

2021-06-20 20:29:07 UTC

Updated at

2021-06-30 00:09:53 UTC

NP-MRD ID

NP0037597

Secondary Accession Numbers

None

Natural Product Identification

Common Name

viteagnusin D

Provided By

JEOL Database JEOL Logo

Description

viteagnusin D is found in Vitex agnus-castus. viteagnusin D was first documented in 2008 (Ono, M., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202122293D          

 58 59  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 58 59  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306202122293D          

 58 59  0  0  0  0            999 V2000
   -1.1720    4.0430   -1.6749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7761    2.9073   -1.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3654   -0.3392   -2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8030    0.5284    0.8992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2760   -2.5849   -1.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0499   -3.2725   -1.8285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6739   -1.8809   -0.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3057   -1.6526   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1223   -4.2869    0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4110   -3.0756    1.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2634   -4.1278    2.1628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3545   -3.8310    0.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9576   -1.6908    2.4868 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8541   -2.3079    2.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0402   -3.8529    2.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8397   -3.0107    3.7115 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3120   -2.5235    4.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1748   -3.9853    4.1196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9320   -2.8624    5.2432 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0407   -0.7527    4.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3491   -0.3322    4.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    0.0489    2.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7066    1.2798    3.0845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7832    1.1450    0.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5827    0.7700    2.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3240   -1.2918    0.4796 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4744   -0.6528   -0.8846 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2916   -2.3480   -0.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  6  0  0  0
 15 14  1  0  0  0  0
 15 17  1  0  0  0  0
 21 20  1  0  0  0  0
  8  7  1  0  0  0  0
 14 13  1  0  0  0  0
 10 11  1  0  0  0  0
  8 10  1  0  0  0  0
  7  6  1  0  0  0  0
 12 13  1  0  0  0  0
  6  3  1  0  0  0  0
  3  4  1  0  0  0  0
 10 12  1  0  0  0  0
  3  2  1  0  0  0  0
 21  8  1  0  0  0  0
  2  1  2  3  0  0  0
 19 18  1  0  0  0  0
  3  5  1  1  0  0  0
 19 20  1  0  0  0  0
 21 22  1  6  0  0  0
 14 21  1  0  0  0  0
 14 43  1  1  0  0  0
 18 15  1  0  0  0  0
  8  9  1  1  0  0  0
 19 52  1  0  0  0  0
 19 53  1  0  0  0  0
 18 50  1  0  0  0  0
 18 51  1  0  0  0  0
 20 54  1  0  0  0  0
 20 55  1  0  0  0  0
 13 41  1  0  0  0  0
 13 42  1  0  0  0  0
 10 35  1  6  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 16 44  1  0  0  0  0
 16 45  1  0  0  0  0
 16 46  1  0  0  0  0
 17 47  1  0  0  0  0
 17 48  1  0  0  0  0
 17 49  1  0  0  0  0
  7 32  1  0  0  0  0
  7 33  1  0  0  0  0
 11 36  1  0  0  0  0
 11 37  1  0  0  0  0
 11 38  1  0  0  0  0
  6 30  1  0  0  0  0
  6 31  1  0  0  0  0
  4 26  1  0  0  0  0
  4 27  1  0  0  0  0
  4 28  1  0  0  0  0
  2 25  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  5 29  1  0  0  0  0
 22 56  1  0  0  0  0
 22 57  1  0  0  0  0
 22 58  1  0  0  0  0
  9 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0037597

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@](C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]1(O[H])[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]2([H])C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])[C@]12C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H36O2/c1-7-18(5,21)13-14-20(22)15(2)9-10-16-17(3,4)11-8-12-19(16,20)6/h7,15-16,21-22H,1,8-14H2,2-6H3/t15-,16+,18-,19+,20-/m1/s1

> <INCHI_KEY>
QNIUYBRZAVVKNV-LWASTNQWSA-N

> <FORMULA>
C20H36O2

> <MOLECULAR_WEIGHT>
308.506

> <EXACT_MASS>
308.271530399

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
37.80101310318027

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,4aS,8aS)-1-[(3S)-3-hydroxy-3-methylpent-4-en-1-yl]-2,5,5,8a-tetramethyl-decahydronaphthalen-1-ol

> <ALOGPS_LOGP>
4.66

> <JCHEM_LOGP>
4.570719379

> <ALOGPS_LOGS>
-5.60

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.825065971166989

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.071745467407926

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9285502734615587

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
92.75189999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.81e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,4aS,8aS)-1-[(3S)-3-hydroxy-3-methylpent-4-en-1-yl]-2,5,5,8a-tetramethyl-hexahydro-2H-naphthalen-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 58 59  0  0  0  0  0  0  0  0999 V2000
   -1.1720    4.0430   -1.6749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7761    2.9073   -1.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6358    2.3961   -0.8851 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7279    3.3893   -1.3078 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7787    2.1836    0.5229 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7873    1.0395   -1.6194 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0230    0.2012   -1.2265 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8468   -0.8384   -0.0632 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7492   -0.4432    0.7721 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4678   -2.2485   -0.6476 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1878   -2.2553   -1.4969 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3006   -3.3024    0.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5108   -3.4048    1.3793 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8768   -2.0395    1.9895 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9171   -2.1321    3.1686 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2273   -2.8610    2.8134 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2948   -2.9226    4.3525 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2254   -0.7139    3.7048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5793    0.2933    2.6219 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4812    0.3847    1.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1620   -0.9680    0.8586 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3702   -1.3436   -0.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4775    4.7562   -2.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2294    4.2826   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5549    2.2529   -0.6876 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5965    4.3561   -0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7236    3.0447   -1.0110 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7297    3.5575   -2.3899 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5534    3.0291    0.9539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1160    0.4378   -1.4702 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8360    1.2366   -2.6992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8415    0.8880   -1.0089 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3654   -0.3392   -2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8030    0.5284    0.8992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2760   -2.5849   -1.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0499   -3.2725   -1.8285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6739   -1.8809   -0.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3057   -1.6526   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1223   -4.2869    0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4110   -3.0756    1.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2634   -4.1278    2.1628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3545   -3.8310    0.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9576   -1.6908    2.4868 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8541   -2.3079    2.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0402   -3.8529    2.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8397   -3.0107    3.7115 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3120   -2.5235    4.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1748   -3.9853    4.1196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9320   -2.8624    5.2432 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0407   -0.7527    4.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3491   -0.3322    4.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    0.0489    2.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7066    1.2798    3.0845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7832    1.1450    0.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5827    0.7700    2.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3240   -1.2918    0.4796 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4744   -0.6528   -0.8846 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2916   -2.3480   -0.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  6
 15 14  1  0
 15 17  1  0
 21 20  1  0
  8  7  1  0
 14 13  1  0
 10 11  1  0
  8 10  1  0
  7  6  1  0
 12 13  1  0
  6  3  1  0
  3  4  1  0
 10 12  1  0
  3  2  1  0
 21  8  1  0
  2  1  2  3
 19 18  1  0
  3  5  1  1
 19 20  1  0
 21 22  1  6
 14 21  1  0
 14 43  1  1
 18 15  1  0
  8  9  1  1
 19 52  1  0
 19 53  1  0
 18 50  1  0
 18 51  1  0
 20 54  1  0
 20 55  1  0
 13 41  1  0
 13 42  1  0
 10 35  1  6
 12 39  1  0
 12 40  1  0
 16 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 17 49  1  0
  7 32  1  0
  7 33  1  0
 11 36  1  0
 11 37  1  0
 11 38  1  0
  6 30  1  0
  6 31  1  0
  4 26  1  0
  4 27  1  0
  4 28  1  0
  2 25  1  0
  1 23  1  0
  1 24  1  0
  5 29  1  0
 22 56  1  0
 22 57  1  0
 22 58  1  0
  9 34  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.172   4.043  -1.675  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.776   2.907  -1.083  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.636   2.396  -0.885  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.728   3.389  -1.308  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.779   2.184   0.523  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.787   1.040  -1.619  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.023   0.201  -1.226  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.847  -0.838  -0.063  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.749  -0.443   0.772  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.468  -2.248  -0.648  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.188  -2.255  -1.497  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.301  -3.302   0.459  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.511  -3.405   1.379  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.877  -2.039   1.990  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.917  -2.132   3.169  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.227  -2.861   2.813  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.295  -2.923   4.353  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.225  -0.714   3.705  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.579   0.293   2.622  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.481   0.385   1.565  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.162  -0.968   0.859  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.370  -1.344  -0.042  0.00  0.00           C+0
HETATM   23  H   UNK     0      -0.478   4.756  -2.105  0.00  0.00           H+0
HETATM   24  H   UNK     0      -2.229   4.283  -1.748  0.00  0.00           H+0
HETATM   25  H   UNK     0      -1.555   2.253  -0.688  0.00  0.00           H+0
HETATM   26  H   UNK     0       1.597   4.356  -0.807  0.00  0.00           H+0
HETATM   27  H   UNK     0       2.724   3.045  -1.011  0.00  0.00           H+0
HETATM   28  H   UNK     0       1.730   3.558  -2.390  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.553   3.029   0.954  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.116   0.438  -1.470  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.836   1.237  -2.699  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.841   0.888  -1.009  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.365  -0.339  -2.119  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.803   0.528   0.899  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.276  -2.585  -1.309  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.050  -3.272  -1.829  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.674  -1.881  -0.935  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.306  -1.653  -2.402  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.122  -4.287   0.008  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.411  -3.076   1.061  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.263  -4.128   2.163  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.354  -3.831   0.827  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.958  -1.691   2.487  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.854  -2.308   2.116  0.00  0.00           H+0
HETATM   45  H   UNK     0       5.040  -3.853   2.391  0.00  0.00           H+0
HETATM   46  H   UNK     0       5.840  -3.011   3.712  0.00  0.00           H+0
HETATM   47  H   UNK     0       2.312  -2.523   4.627  0.00  0.00           H+0
HETATM   48  H   UNK     0       3.175  -3.985   4.120  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.932  -2.862   5.243  0.00  0.00           H+0
HETATM   50  H   UNK     0       5.041  -0.753   4.439  0.00  0.00           H+0
HETATM   51  H   UNK     0       3.349  -0.332   4.247  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.545   0.049   2.169  0.00  0.00           H+0
HETATM   53  H   UNK     0       4.707   1.280   3.084  0.00  0.00           H+0
HETATM   54  H   UNK     0       3.783   1.145   0.837  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.583   0.770   2.060  0.00  0.00           H+0
HETATM   56  H   UNK     0       5.324  -1.292   0.480  0.00  0.00           H+0
HETATM   57  H   UNK     0       4.474  -0.653  -0.885  0.00  0.00           H+0
HETATM   58  H   UNK     0       4.292  -2.348  -0.464  0.00  0.00           H+0
CONECT    1    2   23   24                                                  
CONECT    2    3    1   25                                                  
CONECT    3    6    4    2    5                                             
CONECT    4    3   26   27   28                                             
CONECT    5    3   29                                                       
CONECT    6    7    3   30   31                                             
CONECT    7    8    6   32   33                                             
CONECT    8    7   10   21    9                                             
CONECT    9    8   34                                                       
CONECT   10   11    8   12   35                                             
CONECT   11   10   36   37   38                                             
CONECT   12   13   10   39   40                                             
CONECT   13   14   12   41   42                                             
CONECT   14   15   13   21   43                                             
CONECT   15   16   14   17   18                                             
CONECT   16   15   44   45   46                                             
CONECT   17   15   47   48   49                                             
CONECT   18   19   15   50   51                                             
CONECT   19   18   20   52   53                                             
CONECT   20   21   19   54   55                                             
CONECT   21   20    8   22   14                                             
CONECT   22   21   56   57   58                                             
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    2                                                            
CONECT   26    4                                                            
CONECT   27    4                                                            
CONECT   28    4                                                            
CONECT   29    5                                                            
CONECT   30    6                                                            
CONECT   31    6                                                            
CONECT   32    7                                                            
CONECT   33    7                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   11                                                            
CONECT   37   11                                                            
CONECT   38   11                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   13                                                            
CONECT   42   13                                                            
CONECT   43   14                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   16                                                            
CONECT   47   17                                                            
CONECT   48   17                                                            
CONECT   49   17                                                            
CONECT   50   18                                                            
CONECT   51   18                                                            
CONECT   52   19                                                            
CONECT   53   19                                                            
CONECT   54   20                                                            
CONECT   55   20                                                            
CONECT   56   22                                                            
CONECT   57   22                                                            
CONECT   58   22                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  118    0
END

RDKit          3D

58 59  0  0  0  0  0  0  0  0999 V2000
   -1.1720    4.0430   -1.6749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7761    2.9073   -1.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6358    2.3961   -0.8851 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7279    3.3893   -1.3078 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7787    2.1836    0.5229 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7873    1.0395   -1.6194 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0230    0.2012   -1.2265 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8468   -0.8384   -0.0632 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7492   -0.4432    0.7721 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4678   -2.2485   -0.6476 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1878   -2.2553   -1.4969 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3006   -3.3024    0.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5108   -3.4048    1.3793 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8768   -2.0395    1.9895 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9171   -2.1321    3.1686 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2273   -2.8610    2.8134 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2948   -2.9226    4.3525 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2254   -0.7139    3.7048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5793    0.2933    2.6219 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4812    0.3847    1.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1620   -0.9680    0.8586 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3702   -1.3436   -0.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4775    4.7562   -2.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2294    4.2826   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5549    2.2529   -0.6876 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5965    4.3561   -0.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7236    3.0447   -1.0110 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7297    3.5575   -2.3899 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5534    3.0291    0.9539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1160    0.4378   -1.4702 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8360    1.2366   -2.6992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8415    0.8880   -1.0089 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3654   -0.3392   -2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8030    0.5284    0.8992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2760   -2.5849   -1.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0499   -3.2725   -1.8285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6739   -1.8809   -0.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3057   -1.6526   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1223   -4.2869    0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4110   -3.0756    1.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2634   -4.1278    2.1628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3545   -3.8310    0.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9576   -1.6908    2.4868 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8541   -2.3079    2.1161 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0402   -3.8529    2.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8397   -3.0107    3.7115 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3120   -2.5235    4.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1748   -3.9853    4.1196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9320   -2.8624    5.2432 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0407   -0.7527    4.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3491   -0.3322    4.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    0.0489    2.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7066    1.2798    3.0845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7832    1.1450    0.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5827    0.7700    2.0599 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3240   -1.2918    0.4796 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4744   -0.6528   -0.8846 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2916   -2.3480   -0.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  6
 15 14  1  0
 15 17  1  0
 21 20  1  0
  8  7  1  0
 14 13  1  0
 10 11  1  0
  8 10  1  0
  7  6  1  0
 12 13  1  0
  6  3  1  0
  3  4  1  0
 10 12  1  0
  3  2  1  0
 21  8  1  0
  2  1  2  3
 19 18  1  0
  3  5  1  1
 19 20  1  0
 21 22  1  6
 14 21  1  0
 14 43  1  1
 18 15  1  0
  8  9  1  1
 19 52  1  0
 19 53  1  0
 18 50  1  0
 18 51  1  0
 20 54  1  0
 20 55  1  0
 13 41  1  0
 13 42  1  0
 10 35  1  6
 12 39  1  0
 12 40  1  0
 16 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 17 49  1  0
  7 32  1  0
  7 33  1  0
 11 36  1  0
 11 37  1  0
 11 38  1  0
  6 30  1  0
  6 31  1  0
  4 26  1  0
  4 27  1  0
  4 28  1  0
  2 25  1  0
  1 23  1  0
  1 24  1  0
  5 29  1  0
 22 56  1  0
 22 57  1  0
 22 58  1  0
  9 34  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₆O₂

Average Mass

308.5060 Da

Monoisotopic Mass

308.27153 Da

IUPAC Name

(1R,2R,4aS,8aS)-1-[(3S)-3-hydroxy-3-methylpent-4-en-1-yl]-2,5,5,8a-tetramethyl-decahydronaphthalen-1-ol

Traditional Name

(1R,2R,4aS,8aS)-1-[(3S)-3-hydroxy-3-methylpent-4-en-1-yl]-2,5,5,8a-tetramethyl-hexahydro-2H-naphthalen-1-ol

CAS Registry Number

Not Available

SMILES

[H]O[C@@](C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]1(O[H])[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]2([H])C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])[C@]12C([H])([H])[H]

InChI Identifier

InChI=1S/C20H36O2/c1-7-18(5,21)13-14-20(22)15(2)9-10-16-17(3,4)11-8-12-19(16,20)6/h7,15-16,21-22H,1,8-14H2,2-6H3/t15-,16+,18-,19+,20-/m1/s1

InChI Key

QNIUYBRZAVVKNV-LWASTNQWSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vitex agnus-castus	JEOL database	Ono, M., et al, Chem. Pharm. Bull. 56, 1621 (2008)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.66	ALOGPS
logP	4.57	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	14.07	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	92.75 m³·mol⁻¹	ChemAxon
Polarizability	37.8 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Ono, M., et al. (2008). Ono, M., et al, Chem. Pharm. Bull. 56, 1621 (2008). Chem. Pharm. Bull..

Showing NP-Card for viteagnusin D (NP0037597)

MOL for NP0037597 (viteagnusin D)

3D MOL for NP0037597 (viteagnusin D)

3D SDF for NP0037597 (viteagnusin D)

3D-SDF for NP0037597 (viteagnusin D)

PDB for NP0037597 (viteagnusin D)

3D PDB for NP0037597 (viteagnusin D)

SMILES for NP0037597 (viteagnusin D)

INCHI for NP0037597 (viteagnusin D)

Structure for NP0037597 (viteagnusin D)

3D Structure for NP0037597 (viteagnusin D)