NP-MRD: Showing NP-Card for (1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene (NP0037146)

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Record Information

Version

2.0

Created at

2021-06-20 20:08:14 UTC

Updated at

2021-06-30 00:09:11 UTC

NP-MRD ID

NP0037146

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene

Provided By

JEOL Database JEOL Logo

Description

(1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene is found in Dioscorea villosa. (1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene was first documented in 2012 (Dong, S. -H., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202122083D          

 43 45  0  0  0  0            999 V2000
    6.6889    1.7741    3.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5624    1.2643    2.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6488    0.8191    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    0.2888    1.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020    0.1935    1.7367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0835   -0.3293    1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0574   -1.3849    0.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8278   -1.9674   -0.3799 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9511   -1.8938   -1.9050 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3159   -2.4138   -2.5763 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4020   -3.8284   -2.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -1.7703   -1.9840 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5409   -1.8502   -0.4551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7395   -1.1307    0.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    0.2430    0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.8939    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9897    0.1713    1.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1070    0.7664    1.6830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0522   -1.1863    0.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9314   -1.8362    0.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3359   -1.2545    0.0431 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2320    0.6634    3.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3617    1.1935    3.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4788    2.0378    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5903    0.8888    1.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5982   -0.0370    0.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1787    1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9833   -1.9100    0.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7440   -3.0108   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -2.4717   -2.2386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1004   -0.8503   -2.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2806   -2.2164   -3.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2962   -4.2320   -2.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5933   -0.7193   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4654   -2.2603   -2.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5666   -2.8948   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7916    0.8111    0.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646    1.9548    1.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9077    1.7027    1.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9702   -1.7380    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9938   -2.8990    0.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2950    0.6102    3.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5425    4.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 12  1  0  0  0  0
 15 16  2  0  0  0  0
  8  7  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 14  1  0  0  0  0
  7  6  2  0  0  0  0
 13 21  1  0  0  0  0
  6  5  1  0  0  0  0
 19 20  1  0  0  0  0
  5  4  2  0  0  0  0
  4  3  1  0  0  0  0
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  3  2  2  0  0  0  0
 17 19  2  0  0  0  0
  2 23  1  0  0  0  0
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  2  1  1  0  0  0  0
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 10 11  1  0  0  0  0
 16 38  1  0  0  0  0
 19 40  1  0  0  0  0
 20 41  1  0  0  0  0
 15 37  1  0  0  0  0
 13 36  1  6  0  0  0
  8 29  1  6  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 10 32  1  6  0  0  0
 12 34  1  0  0  0  0
 12 35  1  0  0  0  0
  7 28  1  0  0  0  0
 18 39  1  0  0  0  0
  6 27  1  0  0  0  0
  4 26  1  0  0  0  0
  3 25  1  0  0  0  0
 23 43  1  0  0  0  0
 22 42  1  0  0  0  0
  1 24  1  0  0  0  0
 11 33  1  0  0  0  0
M  END

     RDKit          3D

 43 45  0  0  0  0  0  0  0  0999 V2000
    6.6889    1.7741    3.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5624    1.2643    2.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6488    0.8191    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    0.2888    1.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020    0.1935    1.7367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0835   -0.3293    1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0574   -1.3849    0.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8278   -1.9674   -0.3799 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9511   -1.8938   -1.9050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3159   -2.4138   -2.5763 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4020   -3.8284   -2.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -1.7703   -1.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5409   -1.8502   -0.4551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7395   -1.1307    0.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    0.2430    0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.8939    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9897    0.1713    1.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1070    0.7664    1.6830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0522   -1.1863    0.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9314   -1.8362    0.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3359   -1.2545    0.0431 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2320    0.6634    3.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3617    1.1935    3.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4788    2.0378    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5903    0.8888    1.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5982   -0.0370    0.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1787    1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9833   -1.9100    0.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7440   -3.0108   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -2.4717   -2.2386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1004   -0.8503   -2.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2806   -2.2164   -3.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2962   -4.2320   -2.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5933   -0.7193   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4654   -2.2603   -2.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5666   -2.8948   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7916    0.8111    0.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646    1.9548    1.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9077    1.7027    1.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9702   -1.7380    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9938   -2.8990    0.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2950    0.6102    3.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5425    4.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0
  9 10  1  0
 10 12  1  0
 15 16  2  0
  8  7  1  0
 16 17  1  0
 17 18  1  0
 13 14  1  0
  7  6  2  0
 13 21  1  0
  6  5  1  0
 19 20  1  0
  5  4  2  0
  4  3  1  0
 20 14  2  0
  3  2  2  0
 17 19  2  0
  2 23  1  0
 14 15  1  0
 23 22  2  0
 22  5  1  0
 13 12  1  0
  2  1  1  0
 21  8  1  0
 10 11  1  0
 16 38  1  0
 19 40  1  0
 20 41  1  0
 15 37  1  0
 13 36  1  6
  8 29  1  6
  9 30  1  0
  9 31  1  0
 10 32  1  6
 12 34  1  0
 12 35  1  0
  7 28  1  0
 18 39  1  0
  6 27  1  0
  4 26  1  0
  3 25  1  0
 23 43  1  0
 22 42  1  0
  1 24  1  0
 11 33  1  0
M  END


  Mrv1652306202122083D          

 43 45  0  0  0  0            999 V2000
    6.6889    1.7741    3.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5624    1.2643    2.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6488    0.8191    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    0.2888    1.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020    0.1935    1.7367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0835   -0.3293    1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0574   -1.3849    0.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8278   -1.9674   -0.3799 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9511   -1.8938   -1.9050 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3159   -2.4138   -2.5763 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4020   -3.8284   -2.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -1.7703   -1.9840 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5409   -1.8502   -0.4551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7395   -1.1307    0.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    0.2430    0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.8939    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9897    0.1713    1.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1070    0.7664    1.6830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0522   -1.1863    0.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9314   -1.8362    0.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3359   -1.2545    0.0431 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2320    0.6634    3.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3617    1.1935    3.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4788    2.0378    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5903    0.8888    1.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5982   -0.0370    0.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1787    1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9833   -1.9100    0.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7440   -3.0108   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -2.4717   -2.2386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1004   -0.8503   -2.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2806   -2.2164   -3.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2962   -4.2320   -2.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5933   -0.7193   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4654   -2.2603   -2.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5666   -2.8948   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7916    0.8111    0.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646    1.9548    1.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9077    1.7027    1.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9702   -1.7380    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9938   -2.8990    0.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2950    0.6102    3.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5425    4.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 12  1  0  0  0  0
 15 16  2  0  0  0  0
  8  7  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 14  1  0  0  0  0
  7  6  2  0  0  0  0
 13 21  1  0  0  0  0
  6  5  1  0  0  0  0
 19 20  1  0  0  0  0
  5  4  2  0  0  0  0
  4  3  1  0  0  0  0
 20 14  2  0  0  0  0
  3  2  2  0  0  0  0
 17 19  2  0  0  0  0
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 14 15  1  0  0  0  0
 23 22  2  0  0  0  0
 22  5  1  0  0  0  0
 13 12  1  0  0  0  0
  2  1  1  0  0  0  0
 21  8  1  0  0  0  0
 10 11  1  0  0  0  0
 16 38  1  0  0  0  0
 19 40  1  0  0  0  0
 20 41  1  0  0  0  0
 15 37  1  0  0  0  0
 13 36  1  6  0  0  0
  8 29  1  6  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 10 32  1  6  0  0  0
 12 34  1  0  0  0  0
 12 35  1  0  0  0  0
  7 28  1  0  0  0  0
 18 39  1  0  0  0  0
  6 27  1  0  0  0  0
  4 26  1  0  0  0  0
  3 25  1  0  0  0  0
 23 43  1  0  0  0  0
 22 42  1  0  0  0  0
  1 24  1  0  0  0  0
 11 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0037146

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(\C([H])=C(/[H])[C@@]2([H])O[C@@]([H])(C3=C([H])C([H])=C(O[H])C([H])=C3[H])C([H])([H])[C@]([H])(O[H])C2([H])[H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O4/c20-15-6-1-13(2-7-15)3-10-18-11-17(22)12-19(23-18)14-4-8-16(21)9-5-14/h1-10,17-22H,11-12H2/b10-3+/t17-,18-,19-/m1/s1

> <INCHI_KEY>
GBYSOQCWRCFSHV-OQIJNTKSSA-N

> <FORMULA>
C19H20O4

> <MOLECULAR_WEIGHT>
312.365

> <EXACT_MASS>
312.136159124

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
34.70363933848654

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,4R,6S)-2-(4-hydroxyphenyl)-6-[(E)-2-(4-hydroxyphenyl)ethenyl]oxan-4-ol

> <ALOGPS_LOGP>
2.64

> <JCHEM_LOGP>
3.013874432333333

> <ALOGPS_LOGS>
-3.88

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.790607376872634

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.187893312544677

> <JCHEM_PKA_STRONGEST_BASIC>
-2.768195396244539

> <JCHEM_POLAR_SURFACE_AREA>
69.92

> <JCHEM_REFRACTIVITY>
89.58280000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.07e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,4R,6S)-2-(4-hydroxyphenyl)-6-[(E)-2-(4-hydroxyphenyl)ethenyl]oxan-4-ol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 45  0  0  0  0  0  0  0  0999 V2000
    6.6889    1.7741    3.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5624    1.2643    2.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6488    0.8191    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    0.2888    1.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020    0.1935    1.7367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0835   -0.3293    1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0574   -1.3849    0.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8278   -1.9674   -0.3799 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9511   -1.8938   -1.9050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3159   -2.4138   -2.5763 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4020   -3.8284   -2.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -1.7703   -1.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5409   -1.8502   -0.4551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7395   -1.1307    0.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    0.2430    0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.8939    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9897    0.1713    1.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1070    0.7664    1.6830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0522   -1.1863    0.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9314   -1.8362    0.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3359   -1.2545    0.0431 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2320    0.6634    3.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3617    1.1935    3.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4788    2.0378    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5903    0.8888    1.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5982   -0.0370    0.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1787    1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9833   -1.9100    0.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7440   -3.0108   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -2.4717   -2.2386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1004   -0.8503   -2.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2806   -2.2164   -3.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2962   -4.2320   -2.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5933   -0.7193   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4654   -2.2603   -2.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5666   -2.8948   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7916    0.8111    0.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646    1.9548    1.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9077    1.7027    1.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9702   -1.7380    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9938   -2.8990    0.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2950    0.6102    3.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5425    4.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0
  9 10  1  0
 10 12  1  0
 15 16  2  0
  8  7  1  0
 16 17  1  0
 17 18  1  0
 13 14  1  0
  7  6  2  0
 13 21  1  0
  6  5  1  0
 19 20  1  0
  5  4  2  0
  4  3  1  0
 20 14  2  0
  3  2  2  0
 17 19  2  0
  2 23  1  0
 14 15  1  0
 23 22  2  0
 22  5  1  0
 13 12  1  0
  2  1  1  0
 21  8  1  0
 10 11  1  0
 16 38  1  0
 19 40  1  0
 20 41  1  0
 15 37  1  0
 13 36  1  6
  8 29  1  6
  9 30  1  0
  9 31  1  0
 10 32  1  6
 12 34  1  0
 12 35  1  0
  7 28  1  0
 18 39  1  0
  6 27  1  0
  4 26  1  0
  3 25  1  0
 23 43  1  0
 22 42  1  0
  1 24  1  0
 11 33  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  O   UNK     0       6.689   1.774   3.563  0.00  0.00           O+0
HETATM    2  C   UNK     0       5.562   1.264   2.989  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.649   0.819   1.676  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.519   0.289   1.048  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.302   0.194   1.737  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.083  -0.329   1.106  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.057  -1.385   0.274  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.828  -1.967  -0.380  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.951  -1.894  -1.905  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.316  -2.414  -2.576  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.402  -3.828  -2.408  0.00  0.00           O+0
HETATM   12  C   UNK     0      -1.564  -1.770  -1.984  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.541  -1.850  -0.455  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.740  -1.131   0.137  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.703   0.243   0.428  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.824   0.894   0.950  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.990   0.171   1.176  0.00  0.00           C+0
HETATM   18  O   UNK     0      -6.107   0.766   1.683  0.00  0.00           O+0
HETATM   19  C   UNK     0      -5.052  -1.186   0.889  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.931  -1.836   0.369  0.00  0.00           C+0
HETATM   21  O   UNK     0      -0.336  -1.254   0.043  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.232   0.663   3.056  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.362   1.194   3.686  0.00  0.00           C+0
HETATM   24  H   UNK     0       6.479   2.038   4.474  0.00  0.00           H+0
HETATM   25  H   UNK     0       6.590   0.889   1.139  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.598  -0.037   0.015  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.158   0.179   1.370  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.983  -1.910   0.050  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.744  -3.011  -0.049  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.821  -2.472  -2.239  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.100  -0.850  -2.212  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.281  -2.216  -3.654  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.296  -4.232  -2.954  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.593  -0.719  -2.300  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.465  -2.260  -2.372  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.567  -2.895  -0.117  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.792   0.811   0.252  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.765   1.955   1.169  0.00  0.00           H+0
HETATM   39  H   UNK     0      -5.908   1.703   1.846  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.970  -1.738   1.069  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.994  -2.899   0.146  0.00  0.00           H+0
HETATM   42  H   UNK     0       2.295   0.610   3.606  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.282   1.543   4.711  0.00  0.00           H+0
CONECT    1    2   24                                                       
CONECT    2    3   23    1                                                  
CONECT    3    4    2   25                                                  
CONECT    4    5    3   26                                                  
CONECT    5    6    4   22                                                  
CONECT    6    7    5   27                                                  
CONECT    7    8    6   28                                                  
CONECT    8    9    7   21   29                                             
CONECT    9    8   10   30   31                                             
CONECT   10    9   12   11   32                                             
CONECT   11   10   33                                                       
CONECT   12   10   13   34   35                                             
CONECT   13   14   21   12   36                                             
CONECT   14   13   20   15                                                  
CONECT   15   16   14   37                                                  
CONECT   16   15   17   38                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17   39                                                       
CONECT   19   20   17   40                                                  
CONECT   20   19   14   41                                                  
CONECT   21   13    8                                                       
CONECT   22   23    5   42                                                  
CONECT   23    2   22   43                                                  
CONECT   24    1                                                            
CONECT   25    3                                                            
CONECT   26    4                                                            
CONECT   27    6                                                            
CONECT   28    7                                                            
CONECT   29    8                                                            
CONECT   30    9                                                            
CONECT   31    9                                                            
CONECT   32   10                                                            
CONECT   33   11                                                            
CONECT   34   12                                                            
CONECT   35   12                                                            
CONECT   36   13                                                            
CONECT   37   15                                                            
CONECT   38   16                                                            
CONECT   39   18                                                            
CONECT   40   19                                                            
CONECT   41   20                                                            
CONECT   42   22                                                            
CONECT   43   23                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   90    0
END

RDKit          3D

43 45  0  0  0  0  0  0  0  0999 V2000
    6.6889    1.7741    3.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5624    1.2643    2.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6488    0.8191    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    0.2888    1.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020    0.1935    1.7367 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0835   -0.3293    1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0574   -1.3849    0.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8278   -1.9674   -0.3799 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9511   -1.8938   -1.9050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3159   -2.4138   -2.5763 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4020   -3.8284   -2.4084 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -1.7703   -1.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5409   -1.8502   -0.4551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7395   -1.1307    0.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    0.2430    0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.8939    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9897    0.1713    1.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1070    0.7664    1.6830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0522   -1.1863    0.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9314   -1.8362    0.3691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3359   -1.2545    0.0431 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2320    0.6634    3.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3617    1.1935    3.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4788    2.0378    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5903    0.8888    1.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5982   -0.0370    0.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1787    1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9833   -1.9100    0.0495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7440   -3.0108   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8215   -2.4717   -2.2386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1004   -0.8503   -2.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2806   -2.2164   -3.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2962   -4.2320   -2.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5933   -0.7193   -2.3002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4654   -2.2603   -2.3720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5666   -2.8948   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7916    0.8111    0.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646    1.9548    1.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9077    1.7027    1.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9702   -1.7380    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9938   -2.8990    0.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2950    0.6102    3.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5425    4.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0
  9 10  1  0
 10 12  1  0
 15 16  2  0
  8  7  1  0
 16 17  1  0
 17 18  1  0
 13 14  1  0
  7  6  2  0
 13 21  1  0
  6  5  1  0
 19 20  1  0
  5  4  2  0
  4  3  1  0
 20 14  2  0
  3  2  2  0
 17 19  2  0
  2 23  1  0
 14 15  1  0
 23 22  2  0
 22  5  1  0
 13 12  1  0
  2  1  1  0
 21  8  1  0
 10 11  1  0
 16 38  1  0
 19 40  1  0
 20 41  1  0
 15 37  1  0
 13 36  1  6
  8 29  1  6
  9 30  1  0
  9 31  1  0
 10 32  1  6
 12 34  1  0
 12 35  1  0
  7 28  1  0
 18 39  1  0
  6 27  1  0
  4 26  1  0
  3 25  1  0
 23 43  1  0
 22 42  1  0
  1 24  1  0
 11 33  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₀O₄

Average Mass

312.3650 Da

Monoisotopic Mass

312.13616 Da

IUPAC Name

(2R,4R,6S)-2-(4-hydroxyphenyl)-6-[(E)-2-(4-hydroxyphenyl)ethenyl]oxan-4-ol

Traditional Name

(2R,4R,6S)-2-(4-hydroxyphenyl)-6-[(E)-2-(4-hydroxyphenyl)ethenyl]oxan-4-ol

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C([H])=C(\C([H])=C(/[H])[C@@]2([H])O[C@@]([H])(C3=C([H])C([H])=C(O[H])C([H])=C3[H])C([H])([H])[C@]([H])(O[H])C2([H])[H])C([H])=C1[H]

InChI Identifier

InChI=1S/C19H20O4/c20-15-6-1-13(2-7-15)3-10-18-11-17(22)12-19(23-18)14-4-8-16(21)9-5-14/h1-10,17-22H,11-12H2/b10-3+/t17-,18-,19-/m1/s1

InChI Key

GBYSOQCWRCFSHV-OQIJNTKSSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD + 10% CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dioscorea villosa	JEOL database	Dong, S. -H., et al, J. Nat. Prod. 75, 2168 (2012)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.64	ALOGPS
logP	3.01	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	9.19	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.92 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	89.58 m³·mol⁻¹	ChemAxon
Polarizability	34.7 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Dong, S. -H., et al. (2012). Dong, S. -H., et al, J. Nat. Prod. 75, 2168 (2012). J. Nat. Prod..

Showing NP-Card for (1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene (NP0037146)

MOL for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

3D MOL for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

3D SDF for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

3D-SDF for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

PDB for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

3D PDB for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

SMILES for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

INCHI for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

Structure for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)

3D Structure for NP0037146 ((1R,3R,5S,6E)-1,7-bis(4-hydroxyphenyl)-1,5-epoxy-3-hydroxyhept-6-ene)