NP-MRD: Showing NP-Card for melodinine M (NP0036500)

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Record Information

Version

2.0

Created at

2021-06-20 19:39:28 UTC

Updated at

2021-06-30 00:08:11 UTC

NP-MRD ID

NP0036500

Secondary Accession Numbers

None

Natural Product Identification

Common Name

melodinine M

Provided By

JEOL Database JEOL Logo

Description

Melodinine M belongs to the class of organic compounds known as plumeran-type alkaloids. These are alkaloids with a structure based on the plumeran skeleton. Plumeran is a pentacyclic compound that consists of a pyrrolidine ring shed to the quinoline moiety of pyrido[3,2-c]carbazole ring system. melodinine M is found in Melodinus suaveolens. melodinine M was first documented in 2012 (Liu, Y. -P., et al.). Based on a literature review very few articles have been published on Melodinine M.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202121393D          

 51 55  0  0  0  0            999 V2000
    2.7084    1.5777   -0.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2358    1.4575   -0.6971 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5723    0.0699   -0.4342 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3458   -0.9868   -1.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7220   -2.1634   -0.7044 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3484   -2.5894    0.6907 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2577   -1.7604    1.1766 N   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2010   -2.0170    2.5225 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2076   -0.8866    2.6614 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5271    0.3279    1.9565 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5782    1.1466    1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8020    0.9901   -0.1365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8655    1.7944   -0.7932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4537    2.7276   -0.2633 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1000    1.3289   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1267    2.0316   -2.7461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9029    0.0976   -0.9604 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1066    2.0583    2.0618 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    2.1411    3.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7619    2.6685    4.4024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9118    2.4405    5.5948 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5944    0.9954    4.2785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0679    1.4005    3.0008 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8539    2.3114    2.3895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5739   -0.3143    1.0847 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.8669    1.4314    0.7595 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0725    2.5801   -0.5607 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1578    1.6932   -1.7677 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6843    2.2530   -0.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5563   -0.1434    1.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
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  2 31  1  0  0  0  0
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  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
M  END

     RDKit          3D

 51 55  0  0  0  0  0  0  0  0999 V2000
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    1.3458   -0.9868   -1.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.2577   -1.7604    1.1766 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2010   -2.0170    2.5225 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1000    1.3289   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
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 23 24  2  0
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M  END


  Mrv1652306202121393D          

 51 55  0  0  0  0            999 V2000
    2.7084    1.5777   -0.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2358    1.4575   -0.6971 C   0  0  2  0  0  0  0  0  0  0  0  0
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    0.2577   -1.7604    1.1766 N   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2010   -2.0170    2.5225 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2076   -0.8866    2.6614 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.3370   -0.9110   -0.9762 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9207    2.6245    1.8283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6978    3.1875    4.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7459    1.2446    6.3886 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4571    0.3403    4.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3152    3.0023    1.9627 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5563   -0.1434    1.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 11  1  0  0  0  0
 23 24  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
 27 10  1  0  0  0  0
 27  7  1  0  0  0  0
 21 20  1  0  0  0  0
 20 19  2  0  0  0  0
 25 24  1  0  0  0  0
 10 11  1  0  0  0  0
 10 25  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 23 21  1  0  0  0  0
 21 22  2  0  0  0  0
 12 13  1  0  0  0  0
 11 12  2  0  0  0  0
 13 14  2  0  0  0  0
 12 17  1  0  0  0  0
 13 15  1  0  0  0  0
 17  3  1  0  0  0  0
 15 16  1  0  0  0  0
 27  3  1  0  0  0  0
 25 26  1  6  0  0  0
 25 19  1  0  0  0  0
  3  2  1  1  0  0  0
 19 18  1  0  0  0  0
  2  1  1  0  0  0  0
 18 46  1  0  0  0  0
 23 48  1  0  0  0  0
 20 47  1  0  0  0  0
 24 49  1  0  0  0  0
 17 44  1  0  0  0  0
 17 45  1  0  0  0  0
  4 33  1  0  0  0  0
  5 34  1  0  0  0  0
  6 35  1  0  0  0  0
  6 36  1  0  0  0  0
 27 51  1  1  0  0  0
  8 37  1  0  0  0  0
  8 38  1  0  0  0  0
  9 39  1  0  0  0  0
  9 40  1  0  0  0  0
 16 41  1  0  0  0  0
 16 42  1  0  0  0  0
 16 43  1  0  0  0  0
 26 50  1  0  0  0  0
  2 31  1  0  0  0  0
  2 32  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0036500

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]12C([H])=C([H])C(=O)C([H])=C1N([H])C1=C(C(=O)OC([H])([H])[H])C([H])([H])[C@@]3(C([H])=C([H])C([H])([H])N4C([H])([H])C([H])([H])[C@]21[C@]34[H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H24N2O4/c1-3-19-6-4-9-23-10-8-20(18(19)23)16(14(12-19)17(25)27-2)22-15-11-13(24)5-7-21(15,20)26/h4-7,11,18,22,26H,3,8-10,12H2,1-2H3/t18-,19-,20-,21-/m0/s1

> <INCHI_KEY>
HRCGRANBXMJFJR-TUFLPTIASA-N

> <FORMULA>
C21H24N2O4

> <MOLECULAR_WEIGHT>
368.433

> <EXACT_MASS>
368.173607261

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
39.14295464437156

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,2R,12R,19S)-12-ethyl-2-hydroxy-5-oxo-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-3,6,9,13-tetraene-10-carboxylate

> <ALOGPS_LOGP>
1.89

> <JCHEM_LOGP>
0.6763002223333335

> <ALOGPS_LOGS>
-2.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
19.90209759804565

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.938190715488382

> <JCHEM_PKA_STRONGEST_BASIC>
8.728976221961556

> <JCHEM_POLAR_SURFACE_AREA>
78.87

> <JCHEM_REFRACTIVITY>
104.4819

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.17e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,2R,12R,19S)-12-ethyl-2-hydroxy-5-oxo-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-3,6,9,13-tetraene-10-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 51 55  0  0  0  0  0  0  0  0999 V2000
    2.7084    1.5777   -0.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2358    1.4575   -0.6971 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5723    0.0699   -0.4342 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3458   -0.9868   -1.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7220   -2.1634   -0.7044 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3484   -2.5894    0.6907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2577   -1.7604    1.1766 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2010   -2.0170    2.5225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2076   -0.8866    2.6614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5271    0.3279    1.9565 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5782    1.1466    1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8020    0.9901   -0.1365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8655    1.7944   -0.7932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4537    2.7276   -0.2633 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1000    1.3289   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1267    2.0316   -2.7461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9029    0.0976   -0.9604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1066    2.0583    2.0618 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    2.1411    3.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7619    2.6685    4.4024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9118    2.4405    5.5948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1697    2.9758    6.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2246    1.4889    5.4709 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5944    0.9954    4.2785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0679    1.4005    3.0008 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8539    2.3114    2.3895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5739   -0.3143    1.0847 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3304    0.8602   -0.8545 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8669    1.4314    0.7595 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0725    2.5801   -0.5607 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1578    1.6932   -1.7677 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6843    2.2530   -0.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -0.7589   -2.2699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2976   -2.8676   -1.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0209   -3.6347    0.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2308   -2.5331    1.3389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6037   -1.9328    3.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6818   -2.9944    2.6247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4626   -0.7139    3.7117 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1394   -1.1639    2.1485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0820    1.9396   -2.2200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2318    1.5790   -3.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8529    3.0836   -2.8736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3370   -0.9110   -0.9762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8785    0.4358   -2.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9207    2.6245    1.8283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6978    3.1875    4.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7459    1.2446    6.3886 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4571    0.3403    4.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3152    3.0023    1.9627 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5563   -0.1434    1.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 11  1  0
 23 24  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
 27 10  1  0
 27  7  1  0
 21 20  1  0
 20 19  2  0
 25 24  1  0
 10 11  1  0
 10 25  1  0
  7  8  1  0
  8  9  1  0
 10  9  1  1
 23 21  1  0
 21 22  2  0
 12 13  1  0
 11 12  2  0
 13 14  2  0
 12 17  1  0
 13 15  1  0
 17  3  1  0
 15 16  1  0
 27  3  1  0
 25 26  1  6
 25 19  1  0
  3  2  1  1
 19 18  1  0
  2  1  1  0
 18 46  1  0
 23 48  1  0
 20 47  1  0
 24 49  1  0
 17 44  1  0
 17 45  1  0
  4 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
 27 51  1  1
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 16 41  1  0
 16 42  1  0
 16 43  1  0
 26 50  1  0
  2 31  1  0
  2 32  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       2.708   1.578  -0.311  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.236   1.458  -0.697  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.572   0.070  -0.434  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.346  -0.987  -1.239  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.722  -2.163  -0.704  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.348  -2.589   0.691  0.00  0.00           C+0
HETATM    7  N   UNK     0       0.258  -1.760   1.177  0.00  0.00           N+0
HETATM    8  C   UNK     0      -0.201  -2.017   2.523  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.208  -0.887   2.661  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.527   0.328   1.956  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.578   1.147   1.180  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.802   0.990  -0.137  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.865   1.794  -0.793  0.00  0.00           C+0
HETATM   14  O   UNK     0      -3.454   2.728  -0.263  0.00  0.00           O+0
HETATM   15  O   UNK     0      -3.100   1.329  -2.045  0.00  0.00           O+0
HETATM   16  C   UNK     0      -4.127   2.032  -2.746  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.903   0.098  -0.960  0.00  0.00           C+0
HETATM   18  N   UNK     0      -2.107   2.058   2.062  0.00  0.00           N+0
HETATM   19  C   UNK     0      -1.397   2.141   3.230  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.762   2.668   4.402  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.912   2.441   5.595  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.170   2.976   6.666  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.225   1.489   5.471  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.594   0.995   4.279  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.068   1.401   3.001  0.00  0.00           C+0
HETATM   26  O   UNK     0       0.854   2.311   2.389  0.00  0.00           O+0
HETATM   27  C   UNK     0       0.574  -0.314   1.085  0.00  0.00           C+0
HETATM   28  H   UNK     0       3.330   0.860  -0.855  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.867   1.431   0.760  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.072   2.580  -0.561  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.158   1.693  -1.768  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.684   2.253  -0.187  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.605  -0.759  -2.270  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.298  -2.868  -1.298  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.021  -3.635   0.658  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.231  -2.533   1.339  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.604  -1.933   3.262  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.682  -2.994   2.625  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.463  -0.714   3.712  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.139  -1.164   2.148  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.082   1.940  -2.220  0.00  0.00           H+0
HETATM   42  H   UNK     0      -4.232   1.579  -3.736  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.853   3.084  -2.874  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.337  -0.911  -0.976  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.879   0.436  -2.004  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.921   2.624   1.828  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.698   3.188   4.558  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.746   1.245   6.389  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.457   0.340   4.213  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.315   3.002   1.963  0.00  0.00           H+0
HETATM   51  H   UNK     0       1.556  -0.143   1.543  0.00  0.00           H+0
CONECT    1    2   28   29   30                                             
CONECT    2    3    1   31   32                                             
CONECT    3    4   17   27    2                                             
CONECT    4    3    5   33                                                  
CONECT    5    4    6   34                                                  
CONECT    6    5    7   35   36                                             
CONECT    7    6   27    8                                                  
CONECT    8    7    9   37   38                                             
CONECT    9    8   10   39   40                                             
CONECT   10   27   11   25    9                                             
CONECT   11   18   10   12                                                  
CONECT   12   13   11   17                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   41   42   43                                             
CONECT   17   12    3   44   45                                             
CONECT   18   11   19   46                                                  
CONECT   19   20   25   18                                                  
CONECT   20   21   19   47                                                  
CONECT   21   20   23   22                                                  
CONECT   22   21                                                            
CONECT   23   24   21   48                                                  
CONECT   24   23   25   49                                                  
CONECT   25   24   10   26   19                                             
CONECT   26   25   50                                                       
CONECT   27   10    7    3   51                                             
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    2                                                            
CONECT   32    2                                                            
CONECT   33    4                                                            
CONECT   34    5                                                            
CONECT   35    6                                                            
CONECT   36    6                                                            
CONECT   37    8                                                            
CONECT   38    8                                                            
CONECT   39    9                                                            
CONECT   40    9                                                            
CONECT   41   16                                                            
CONECT   42   16                                                            
CONECT   43   16                                                            
CONECT   44   17                                                            
CONECT   45   17                                                            
CONECT   46   18                                                            
CONECT   47   20                                                            
CONECT   48   23                                                            
CONECT   49   24                                                            
CONECT   50   26                                                            
CONECT   51   27                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  110    0
END

RDKit          3D

51 55  0  0  0  0  0  0  0  0999 V2000
    2.7084    1.5777   -0.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2358    1.4575   -0.6971 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5723    0.0699   -0.4342 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3458   -0.9868   -1.2388 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7220   -2.1634   -0.7044 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3484   -2.5894    0.6907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2577   -1.7604    1.1766 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2010   -2.0170    2.5225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2076   -0.8866    2.6614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5271    0.3279    1.9565 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5782    1.1466    1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8020    0.9901   -0.1365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8655    1.7944   -0.7932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4537    2.7276   -0.2633 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1000    1.3289   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1267    2.0316   -2.7461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9029    0.0976   -0.9604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1066    2.0583    2.0618 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    2.1411    3.2302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7619    2.6685    4.4024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9118    2.4405    5.5948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1697    2.9758    6.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2246    1.4889    5.4709 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5944    0.9954    4.2785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0679    1.4005    3.0008 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8539    2.3114    2.3895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5739   -0.3143    1.0847 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3304    0.8602   -0.8545 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8669    1.4314    0.7595 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0725    2.5801   -0.5607 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1578    1.6932   -1.7677 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6843    2.2530   -0.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -0.7589   -2.2699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2976   -2.8676   -1.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0209   -3.6347    0.6576 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2308   -2.5331    1.3389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6037   -1.9328    3.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6818   -2.9944    2.6247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4626   -0.7139    3.7117 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1394   -1.1639    2.1485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0820    1.9396   -2.2200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2318    1.5790   -3.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8529    3.0836   -2.8736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3370   -0.9110   -0.9762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8785    0.4358   -2.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9207    2.6245    1.8283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6978    3.1875    4.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7459    1.2446    6.3886 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4571    0.3403    4.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3152    3.0023    1.9627 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5563   -0.1434    1.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 11  1  0
 23 24  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
 27 10  1  0
 27  7  1  0
 21 20  1  0
 20 19  2  0
 25 24  1  0
 10 11  1  0
 10 25  1  0
  7  8  1  0
  8  9  1  0
 10  9  1  1
 23 21  1  0
 21 22  2  0
 12 13  1  0
 11 12  2  0
 13 14  2  0
 12 17  1  0
 13 15  1  0
 17  3  1  0
 15 16  1  0
 27  3  1  0
 25 26  1  6
 25 19  1  0
  3  2  1  1
 19 18  1  0
  2  1  1  0
 18 46  1  0
 23 48  1  0
 20 47  1  0
 24 49  1  0
 17 44  1  0
 17 45  1  0
  4 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
 27 51  1  1
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 16 41  1  0
 16 42  1  0
 16 43  1  0
 26 50  1  0
  2 31  1  0
  2 32  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄N₂O₄

Average Mass

368.4330 Da

Monoisotopic Mass

368.17361 Da

IUPAC Name

methyl (1R,2R,12R,19S)-12-ethyl-2-hydroxy-5-oxo-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-3,6,9,13-tetraene-10-carboxylate

Traditional Name

methyl (1R,2R,12R,19S)-12-ethyl-2-hydroxy-5-oxo-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-3,6,9,13-tetraene-10-carboxylate

CAS Registry Number

Not Available

SMILES

[H]O[C@@]12C([H])=C([H])C(=O)C([H])=C1N([H])C1=C(C(=O)OC([H])([H])[H])C([H])([H])[C@@]3(C([H])=C([H])C([H])([H])N4C([H])([H])C([H])([H])[C@]21[C@]34[H])C([H])([H])C([H])([H])[H]

InChI Identifier

InChI=1S/C21H24N2O4/c1-3-19-6-4-9-23-10-8-20(18(19)23)16(14(12-19)17(25)27-2)22-15-11-13(24)5-7-21(15,20)26/h4-7,11,18,22,26H,3,8-10,12H2,1-2H3/t18-,19-,20-,21-/m0/s1

InChI Key

HRCGRANBXMJFJR-TUFLPTIASA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Melodinus suaveolens	JEOL database	Liu, Y. -P., et al, J. Nat. Prod. 75, 220 (2012)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.89	ALOGPS
logP	0.68	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	12.94	ChemAxon
pKa (Strongest Basic)	8.73	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	78.87 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	104.48 m³·mol⁻¹	ChemAxon
Polarizability	39.14 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

35003409

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

57333043

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Liu, Y. -P., et al. (2012). Liu, Y. -P., et al, J. Nat. Prod. 75, 220 (2012). J. Nat. Prod..

Showing NP-Card for melodinine M (NP0036500)

MOL for NP0036500 (melodinine M)

3D MOL for NP0036500 (melodinine M)

3D SDF for NP0036500 (melodinine M)

3D-SDF for NP0036500 (melodinine M)

PDB for NP0036500 (melodinine M)

3D PDB for NP0036500 (melodinine M)

SMILES for NP0036500 (melodinine M)

INCHI for NP0036500 (melodinine M)

Structure for NP0036500 (melodinine M)

3D Structure for NP0036500 (melodinine M)