NP-MRD: Showing NP-Card for (+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan (NP0036083)

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Record Information

Version

1.0

Created at

2021-06-20 19:21:05 UTC

Updated at

2021-06-30 00:07:33 UTC

NP-MRD ID

NP0036083

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan

Provided By

JEOL Database JEOL Logo

Description

(+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. (+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan is found in Machilus robusta. It was first documented in 2011 (PMID: 21627109). Based on a literature review very few articles have been published on (+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202121213D          

 51 52  0  0  0  0            999 V2000
    4.3131    2.5427   -1.4370 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2348    3.0981   -0.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390    2.2821    0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3139    0.9626    0.6970 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981    0.2395    1.7895 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3147   -1.1803    1.5959 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8225   -1.4280    1.9390 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4873   -2.8950    1.6357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1634   -0.4230    1.2641 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6026   -0.6361    1.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1139   -0.4500   -0.2812 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7663    0.7531   -0.9298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8901    0.5896   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4731    1.7006   -2.3432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5678    1.5376   -3.1428 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9541    2.9718   -2.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5727    4.0368   -2.7322 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8363    3.1637   -1.3132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4296    4.4660   -1.1780 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6575    4.7007   -0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2409    2.0466   -0.7237 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7427    0.8499    3.0512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1679    2.1670    3.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6565    2.8674    2.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0613    4.1614    2.3102 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3203    2.2688   -1.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7169    3.3123   -2.1019 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9969    1.6880   -1.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3619    0.4735   -0.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5152   -1.5034    0.5666 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9401   -1.8280    2.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7128   -1.2987    3.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5564   -3.1120    0.5652 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1836   -3.5629    2.1552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5191   -3.1564    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1202    0.5780    1.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6334   -0.6919    2.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0414   -1.5541    1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2467    0.1970    1.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5824   -1.3706   -0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5741    4.2341   -0.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4219    4.3619    0.7269 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8273    5.7809   -0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6343    2.1525   -0.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3626    0.3049    3.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199    2.6435    4.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4188    4.4410    1.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
 24 23  2  0  0  0  0
 23 22  1  0  0  0  0
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  5  4  1  0  0  0  0
  4  3  2  0  0  0  0
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  4 29  1  0  0  0  0
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  9 36  1  1  0  0  0
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  6 30  1  0  0  0  0
  6 31  1  0  0  0  0
 10 37  1  0  0  0  0
 10 38  1  0  0  0  0
 10 39  1  0  0  0  0
  8 33  1  0  0  0  0
  8 34  1  0  0  0  0
  8 35  1  0  0  0  0
M  END

     RDKit          3D

 51 52  0  0  0  0  0  0  0  0999 V2000
    4.3131    2.5427   -1.4370 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2348    3.0981   -0.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390    2.2821    0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3139    0.9626    0.6970 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981    0.2395    1.7895 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8225   -1.4280    1.9390 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.9541    2.9718   -2.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.7427    0.8499    3.0512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1679    2.1670    3.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6565    2.8674    2.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0613    4.1614    2.3102 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3203    2.2688   -1.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7169    3.3123   -2.1019 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9969    1.6880   -1.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
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 23 22  1  0
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M  END


  Mrv1652306202121213D          

 51 52  0  0  0  0            999 V2000
    4.3131    2.5427   -1.4370 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2348    3.0981   -0.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390    2.2821    0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3139    0.9626    0.6970 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3147   -1.1803    1.5959 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8225   -1.4280    1.9390 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.1634   -0.4230    1.2641 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6026   -0.6361    1.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2467    0.1970    1.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5824   -1.3706   -0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8273    5.7809   -0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6343    2.1525   -0.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3626    0.3049    3.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199    2.6435    4.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4188    4.4410    1.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
 24 23  2  0  0  0  0
 23 22  1  0  0  0  0
 21 18  1  0  0  0  0
  5  4  1  0  0  0  0
  4  3  2  0  0  0  0
 16 17  1  0  0  0  0
  3  2  1  0  0  0  0
 16 14  1  0  0  0  0
  2  1  1  0  0  0  0
 18 19  1  0  0  0  0
 24 25  1  0  0  0  0
  5 22  2  0  0  0  0
 14 15  1  0  0  0  0
 14 13  2  0  0  0  0
 19 20  1  0  0  0  0
 18 16  2  0  0  0  0
 13 12  1  0  0  0  0
  5  6  1  0  0  0  0
 11  9  1  0  0  0  0
  9  7  1  0  0  0  0
  7  6  1  0  0  0  0
  3 24  1  0  0  0  0
  9 10  1  0  0  0  0
 12 21  2  0  0  0  0
  7  8  1  0  0  0  0
 11 12  1  0  0  0  0
 21 48  1  0  0  0  0
 13 42  1  0  0  0  0
 17 44  1  0  0  0  0
 15 43  1  0  0  0  0
 20 45  1  0  0  0  0
 20 46  1  0  0  0  0
 20 47  1  0  0  0  0
 23 50  1  0  0  0  0
  4 29  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
 25 51  1  0  0  0  0
 22 49  1  0  0  0  0
 11 40  1  0  0  0  0
 11 41  1  0  0  0  0
  9 36  1  1  0  0  0
  7 32  1  1  0  0  0
  6 30  1  0  0  0  0
  6 31  1  0  0  0  0
 10 37  1  0  0  0  0
 10 38  1  0  0  0  0
 10 39  1  0  0  0  0
  8 33  1  0  0  0  0
  8 34  1  0  0  0  0
  8 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0036083

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1OC([H])([H])[H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@]([H])(C([H])([H])[H])C([H])([H])C1=C([H])C(OC([H])([H])[H])=C(O[H])C(O[H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O5/c1-12(7-14-5-6-16(21)18(10-14)24-3)13(2)8-15-9-17(22)20(23)19(11-15)25-4/h5-6,9-13,21-23H,7-8H2,1-4H3/t12-,13+/m0/s1

> <INCHI_KEY>
QGQBCKHIRCELEH-QWHCGFSZSA-N

> <FORMULA>
C20H26O5

> <MOLECULAR_WEIGHT>
346.423

> <EXACT_MASS>
346.178023937

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
37.47964885495904

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(2R,3S)-4-(4-hydroxy-3-methoxyphenyl)-2,3-dimethylbutyl]-3-methoxybenzene-1,2-diol

> <ALOGPS_LOGP>
3.99

> <JCHEM_LOGP>
4.746745534333333

> <ALOGPS_LOGS>
-4.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.372576746013484

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.578745395632534

> <JCHEM_PKA_STRONGEST_BASIC>
-4.595811328954349

> <JCHEM_POLAR_SURFACE_AREA>
79.15

> <JCHEM_REFRACTIVITY>
97.56450000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.73e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(2R,3S)-4-(4-hydroxy-3-methoxyphenyl)-2,3-dimethylbutyl]-3-methoxybenzene-1,2-diol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 51 52  0  0  0  0  0  0  0  0999 V2000
    4.3131    2.5427   -1.4370 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2348    3.0981   -0.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390    2.2821    0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3139    0.9626    0.6970 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981    0.2395    1.7895 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3147   -1.1803    1.5959 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8225   -1.4280    1.9390 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4873   -2.8950    1.6357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1634   -0.4230    1.2641 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6026   -0.6361    1.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1139   -0.4500   -0.2812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7663    0.7531   -0.9298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8901    0.5896   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4731    1.7006   -2.3432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5678    1.5376   -3.1428 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9541    2.9718   -2.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5727    4.0368   -2.7322 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8363    3.1637   -1.3132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4296    4.4660   -1.1780 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6575    4.7007   -0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2409    2.0466   -0.7237 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7427    0.8499    3.0512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1679    2.1670    3.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6565    2.8674    2.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0613    4.1614    2.3102 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3203    2.2688   -1.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7169    3.3123   -2.1019 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9969    1.6880   -1.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3619    0.4735   -0.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5152   -1.5034    0.5666 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9401   -1.8280    2.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7128   -1.2987    3.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5564   -3.1120    0.5652 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1836   -3.5629    2.1552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5191   -3.1564    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1202    0.5780    1.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6334   -0.6919    2.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0414   -1.5541    1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2467    0.1970    1.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5824   -1.3706   -0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9191   -0.4772   -0.6431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3157   -0.3935   -1.9330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7951    2.4452   -3.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0574    4.8149   -2.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5741    4.2341   -0.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4219    4.3619    0.7269 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8273    5.7809   -0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6343    2.1525   -0.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3626    0.3049    3.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199    2.6435    4.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4188    4.4410    1.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
 24 23  2  0
 23 22  1  0
 21 18  1  0
  5  4  1  0
  4  3  2  0
 16 17  1  0
  3  2  1  0
 16 14  1  0
  2  1  1  0
 18 19  1  0
 24 25  1  0
  5 22  2  0
 14 15  1  0
 14 13  2  0
 19 20  1  0
 18 16  2  0
 13 12  1  0
  5  6  1  0
 11  9  1  0
  9  7  1  0
  7  6  1  0
  3 24  1  0
  9 10  1  0
 12 21  2  0
  7  8  1  0
 11 12  1  0
 21 48  1  0
 13 42  1  0
 17 44  1  0
 15 43  1  0
 20 45  1  0
 20 46  1  0
 20 47  1  0
 23 50  1  0
  4 29  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
 25 51  1  0
 22 49  1  0
 11 40  1  0
 11 41  1  0
  9 36  1  1
  7 32  1  1
  6 30  1  0
  6 31  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
  8 33  1  0
  8 34  1  0
  8 35  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       4.313   2.543  -1.437  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.235   3.098  -0.129  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.739   2.282   0.856  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.314   0.963   0.697  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.798   0.240   1.790  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.315  -1.180   1.596  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.823  -1.428   1.939  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.487  -2.895   1.636  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.163  -0.423   1.264  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.603  -0.636   1.761  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.114  -0.450  -0.281  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.766   0.753  -0.930  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.890   0.590  -1.752  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.473   1.701  -2.343  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.568   1.538  -3.143  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.954   2.972  -2.126  0.00  0.00           C+0
HETATM   17  O   UNK     0      -2.573   4.037  -2.732  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.836   3.164  -1.313  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.430   4.466  -1.178  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.658   4.701  -0.287  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.241   2.047  -0.724  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.743   0.850   3.051  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.168   2.167   3.217  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.656   2.867   2.123  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.061   4.161   2.310  0.00  0.00           O+0
HETATM   26  H   UNK     0       3.320   2.269  -1.809  0.00  0.00           H+0
HETATM   27  H   UNK     0       4.717   3.312  -2.102  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.997   1.688  -1.462  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.362   0.474  -0.271  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.515  -1.503   0.567  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.940  -1.828   2.225  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.713  -1.299   3.025  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.556  -3.112   0.565  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.184  -3.563   2.155  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.519  -3.156   1.975  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.120   0.578   1.612  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.633  -0.692   2.854  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.041  -1.554   1.358  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.247   0.197   1.460  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.582  -1.371  -0.651  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.919  -0.477  -0.643  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.316  -0.394  -1.933  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.795   2.445  -3.430  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.057   4.815  -2.438  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.574   4.234  -0.661  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.422   4.362   0.727  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.827   5.781  -0.247  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.634   2.152  -0.091  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.363   0.305   3.913  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.120   2.644   4.192  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.419   4.441   1.445  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    3    1                                                       
CONECT    3    4    2   24                                                  
CONECT    4    5    3   29                                                  
CONECT    5    4   22    6                                                  
CONECT    6    5    7   30   31                                             
CONECT    7    9    6    8   32                                             
CONECT    8    7   33   34   35                                             
CONECT    9   11    7   10   36                                             
CONECT   10    9   37   38   39                                             
CONECT   11    9   12   40   41                                             
CONECT   12   13   21   11                                                  
CONECT   13   14   12   42                                                  
CONECT   14   16   15   13                                                  
CONECT   15   14   43                                                       
CONECT   16   17   14   18                                                  
CONECT   17   16   44                                                       
CONECT   18   21   19   16                                                  
CONECT   19   18   20                                                       
CONECT   20   19   45   46   47                                             
CONECT   21   18   12   48                                                  
CONECT   22   23    5   49                                                  
CONECT   23   24   22   50                                                  
CONECT   24   23   25    3                                                  
CONECT   25   24   51                                                       
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    4                                                            
CONECT   30    6                                                            
CONECT   31    6                                                            
CONECT   32    7                                                            
CONECT   33    8                                                            
CONECT   34    8                                                            
CONECT   35    8                                                            
CONECT   36    9                                                            
CONECT   37   10                                                            
CONECT   38   10                                                            
CONECT   39   10                                                            
CONECT   40   11                                                            
CONECT   41   11                                                            
CONECT   42   13                                                            
CONECT   43   15                                                            
CONECT   44   17                                                            
CONECT   45   20                                                            
CONECT   46   20                                                            
CONECT   47   20                                                            
CONECT   48   21                                                            
CONECT   49   22                                                            
CONECT   50   23                                                            
CONECT   51   25                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  104    0
END

RDKit          3D

51 52  0  0  0  0  0  0  0  0999 V2000
    4.3131    2.5427   -1.4370 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2348    3.0981   -0.1285 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390    2.2821    0.8559 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3139    0.9626    0.6970 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7981    0.2395    1.7895 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3147   -1.1803    1.5959 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8225   -1.4280    1.9390 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4873   -2.8950    1.6357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1634   -0.4230    1.2641 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6026   -0.6361    1.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1139   -0.4500   -0.2812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7663    0.7531   -0.9298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8901    0.5896   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4731    1.7006   -2.3432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5678    1.5376   -3.1428 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9541    2.9718   -2.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5727    4.0368   -2.7322 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8363    3.1637   -1.3132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4296    4.4660   -1.1780 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6575    4.7007   -0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2409    2.0466   -0.7237 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7427    0.8499    3.0512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1679    2.1670    3.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6565    2.8674    2.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0613    4.1614    2.3102 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3203    2.2688   -1.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7169    3.3123   -2.1019 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9969    1.6880   -1.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3619    0.4735   -0.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5152   -1.5034    0.5666 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9401   -1.8280    2.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7128   -1.2987    3.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5564   -3.1120    0.5652 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1836   -3.5629    2.1552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5191   -3.1564    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1202    0.5780    1.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6334   -0.6919    2.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0414   -1.5541    1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2467    0.1970    1.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5824   -1.3706   -0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9191   -0.4772   -0.6431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3157   -0.3935   -1.9330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7951    2.4452   -3.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0574    4.8149   -2.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5741    4.2341   -0.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4219    4.3619    0.7269 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8273    5.7809   -0.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6343    2.1525   -0.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3626    0.3049    3.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199    2.6435    4.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4188    4.4410    1.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
 24 23  2  0
 23 22  1  0
 21 18  1  0
  5  4  1  0
  4  3  2  0
 16 17  1  0
  3  2  1  0
 16 14  1  0
  2  1  1  0
 18 19  1  0
 24 25  1  0
  5 22  2  0
 14 15  1  0
 14 13  2  0
 19 20  1  0
 18 16  2  0
 13 12  1  0
  5  6  1  0
 11  9  1  0
  9  7  1  0
  7  6  1  0
  3 24  1  0
  9 10  1  0
 12 21  2  0
  7  8  1  0
 11 12  1  0
 21 48  1  0
 13 42  1  0
 17 44  1  0
 15 43  1  0
 20 45  1  0
 20 46  1  0
 20 47  1  0
 23 50  1  0
  4 29  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
 25 51  1  0
 22 49  1  0
 11 40  1  0
 11 41  1  0
  9 36  1  1
  7 32  1  1
  6 30  1  0
  6 31  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
  8 33  1  0
  8 34  1  0
  8 35  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₅

Average Mass

346.4230 Da

Monoisotopic Mass

346.17802 Da

IUPAC Name

5-[(2R,3S)-4-(4-hydroxy-3-methoxyphenyl)-2,3-dimethylbutyl]-3-methoxybenzene-1,2-diol

Traditional Name

5-[(2R,3S)-4-(4-hydroxy-3-methoxyphenyl)-2,3-dimethylbutyl]-3-methoxybenzene-1,2-diol

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C([H])=C(C([H])=C1OC([H])([H])[H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@]([H])(C([H])([H])[H])C([H])([H])C1=C([H])C(OC([H])([H])[H])=C(O[H])C(O[H])=C1[H]

InChI Identifier

InChI=1S/C20H26O5/c1-12(7-14-5-6-16(21)18(10-14)24-3)13(2)8-15-9-17(22)20(23)19(11-15)25-4/h5-6,9-13,21-23H,7-8H2,1-4H3/t12-,13+/m0/s1

InChI Key

QGQBCKHIRCELEH-QWHCGFSZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Machilus robusta	JEOL database	Li, Y., et al, J. Nat. Prod. 74, 1444 (2011)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.99	ALOGPS
logP	4.75	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	9.58	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	79.15 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	97.56 m³·mol⁻¹	ChemAxon
Polarizability	37.48 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26630006

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

68160

Good Scents ID

Not Available

References

General References

Li Y, Cheng W, Zhu C, Yao C, Xiong L, Tian Y, Wang S, Lin S, Hu J, Yang Y, Guo Y, Yang Y, Li Y, Yuan Y, Chen N, Shi J: Bioactive neolignans and lignans from the bark of Machilus robusta. J Nat Prod. 2011 Jun 24;74(6):1444-52. doi: 10.1021/np2001896. Epub 2011 May 31. [PubMed:21627109 ]
Li, Y., et al. (2011). Li, Y., et al, J. Nat. Prod. 74, 1444 (2011). J. Nat. Prod..

Showing NP-Card for (+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan (NP0036083)

MOL for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

3D MOL for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

3D SDF for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

3D-SDF for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

PDB for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

3D PDB for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

SMILES for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

INCHI for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

Structure for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)

3D Structure for NP0036083 ((+)-(8S,8'R)-3',4,4'-trihydroxy-5,5'-dimethoxylignan)