NP-MRD: Showing NP-Card for linderagalactone B (NP0034688)

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Record Information

Version

2.0

Created at

2021-06-20 18:20:48 UTC

Updated at

2021-06-30 00:05:15 UTC

NP-MRD ID

NP0034688

Secondary Accession Numbers

None

Natural Product Identification

Common Name

linderagalactone B

Provided By

JEOL Database JEOL Logo

Description

Linderagalactone B belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. linderagalactone B is found in Lindera aggregata. linderagalactone B was first documented in 2009 (Gan, L. -S., et al.). Linderagalactone B is a moderately acidic compound (based on its pKa).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202120203D          

 40 42  0  0  0  0            999 V2000
    3.6418   -0.3115    2.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3370   -0.0137    3.3588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -0.5995    4.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0448   -0.4638    5.6084 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1774   -1.4232    4.8088 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3007    0.6704    2.8250 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0699    0.9084    3.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    1.2641    4.7820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0700    0.8061    2.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1265    0.2154    1.5750 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4483   -1.2717    1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2412    0.9267    0.8441 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1680    2.4071    0.5623 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7739    1.3997   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3389    0.9597   -0.7056 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4670    2.1135   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3302   -0.2101   -1.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1517    0.4375    0.7014 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1548    1.2966    1.4685 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3911    1.3418    0.7687 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2693    0.5845    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4884   -0.6925    1.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2050   -1.0862    3.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1950   -1.7097    5.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3491   -1.4070    2.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6373   -1.7912    2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6164   -1.7662    0.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2205    0.4820    0.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.9381    0.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4075    3.0017    1.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4182    1.3030   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0073    2.4544   -2.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4922    1.8102   -1.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.9849   -0.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6860   -0.5891   -1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9548   -1.0421   -1.3727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7226    0.1046   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6467   -0.5308    0.5287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8020    2.3297    1.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9171    2.0613    1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
 10 18  1  0  0  0  0
  7  8  2  0  0  0  0
 10  9  1  0  0  0  0
 18 15  1  0  0  0  0
 15 14  1  0  0  0  0
 12 10  1  0  0  0  0
 14 12  1  0  0  0  0
 14 13  1  0  0  0  0
 12 13  1  0  0  0  0
  6  2  2  0  0  0  0
  9  7  1  0  0  0  0
  2  3  1  0  0  0  0
  7  6  1  0  0  0  0
 15 16  1  6  0  0  0
  3  5  1  0  0  0  0
 10 11  1  1  0  0  0
  6 19  1  0  0  0  0
 15 17  1  0  0  0  0
  3  4  2  0  0  0  0
 18 38  1  6  0  0  0
 19 18  1  0  0  0  0
 19 20  1  0  0  0  0
 19 39  1  1  0  0  0
  5 24  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
 12 28  1  6  0  0  0
 14 31  1  6  0  0  0
 13 29  1  0  0  0  0
 13 30  1  0  0  0  0
 16 32  1  0  0  0  0
 16 33  1  0  0  0  0
 16 34  1  0  0  0  0
 11 25  1  0  0  0  0
 11 26  1  0  0  0  0
 11 27  1  0  0  0  0
 17 35  1  0  0  0  0
 17 36  1  0  0  0  0
 17 37  1  0  0  0  0
 20 40  1  0  0  0  0
M  END

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
    3.6418   -0.3115    2.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3370   -0.0137    3.3588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -0.5995    4.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0448   -0.4638    5.6084 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1774   -1.4232    4.8088 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3007    0.6704    2.8250 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0699    0.9084    3.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    1.2641    4.7820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0700    0.8061    2.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1265    0.2154    1.5750 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4483   -1.2717    1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2412    0.9267    0.8441 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1680    2.4071    0.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7739    1.3997   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3389    0.9597   -0.7056 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4670    2.1135   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3302   -0.2101   -1.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1517    0.4375    0.7014 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1548    1.2966    1.4685 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3911    1.3418    0.7687 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2693    0.5845    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4884   -0.6925    1.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2050   -1.0862    3.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1950   -1.7097    5.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3491   -1.4070    2.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6373   -1.7912    2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6164   -1.7662    0.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2205    0.4820    0.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.9381    0.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4075    3.0017    1.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4182    1.3030   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0073    2.4544   -2.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4922    1.8102   -1.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.9849   -0.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6860   -0.5891   -1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9548   -1.0421   -1.3727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7226    0.1046   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6467   -0.5308    0.5287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8020    2.3297    1.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9171    2.0613    1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
 10 18  1  0
  7  8  2  0
 10  9  1  0
 18 15  1  0
 15 14  1  0
 12 10  1  0
 14 12  1  0
 14 13  1  0
 12 13  1  0
  6  2  2  0
  9  7  1  0
  2  3  1  0
  7  6  1  0
 15 16  1  6
  3  5  1  0
 10 11  1  1
  6 19  1  0
 15 17  1  0
  3  4  2  0
 18 38  1  6
 19 18  1  0
 19 20  1  0
 19 39  1  1
  5 24  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
 12 28  1  6
 14 31  1  6
 13 29  1  0
 13 30  1  0
 16 32  1  0
 16 33  1  0
 16 34  1  0
 11 25  1  0
 11 26  1  0
 11 27  1  0
 17 35  1  0
 17 36  1  0
 17 37  1  0
 20 40  1  0
M  END


  Mrv1652306202120203D          

 40 42  0  0  0  0            999 V2000
    3.6418   -0.3115    2.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3370   -0.0137    3.3588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -0.5995    4.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0448   -0.4638    5.6084 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1774   -1.4232    4.8088 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3007    0.6704    2.8250 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0699    0.9084    3.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    1.2641    4.7820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0700    0.8061    2.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1265    0.2154    1.5750 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4483   -1.2717    1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2412    0.9267    0.8441 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1680    2.4071    0.5623 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7739    1.3997   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3389    0.9597   -0.7056 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4670    2.1135   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3302   -0.2101   -1.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1517    0.4375    0.7014 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1548    1.2966    1.4685 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3911    1.3418    0.7687 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2693    0.5845    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4884   -0.6925    1.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2050   -1.0862    3.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1950   -1.7097    5.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3491   -1.4070    2.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6373   -1.7912    2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6164   -1.7662    0.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2205    0.4820    0.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.9381    0.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4075    3.0017    1.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4182    1.3030   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0073    2.4544   -2.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4922    1.8102   -1.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.9849   -0.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6860   -0.5891   -1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9548   -1.0421   -1.3727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7226    0.1046   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6467   -0.5308    0.5287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8020    2.3297    1.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9171    2.0613    1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
 10 18  1  0  0  0  0
  7  8  2  0  0  0  0
 10  9  1  0  0  0  0
 18 15  1  0  0  0  0
 15 14  1  0  0  0  0
 12 10  1  0  0  0  0
 14 12  1  0  0  0  0
 14 13  1  0  0  0  0
 12 13  1  0  0  0  0
  6  2  2  0  0  0  0
  9  7  1  0  0  0  0
  2  3  1  0  0  0  0
  7  6  1  0  0  0  0
 15 16  1  6  0  0  0
  3  5  1  0  0  0  0
 10 11  1  1  0  0  0
  6 19  1  0  0  0  0
 15 17  1  0  0  0  0
  3  4  2  0  0  0  0
 18 38  1  6  0  0  0
 19 18  1  0  0  0  0
 19 20  1  0  0  0  0
 19 39  1  1  0  0  0
  5 24  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
 12 28  1  6  0  0  0
 14 31  1  6  0  0  0
 13 29  1  0  0  0  0
 13 30  1  0  0  0  0
 16 32  1  0  0  0  0
 16 33  1  0  0  0  0
 16 34  1  0  0  0  0
 11 25  1  0  0  0  0
 11 26  1  0  0  0  0
 11 27  1  0  0  0  0
 17 35  1  0  0  0  0
 17 36  1  0  0  0  0
 17 37  1  0  0  0  0
 20 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0034688

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C(=C1/C(=O)O[C@@]2(C([H])([H])[H])[C@@]3([H])C([H])([H])[C@@]3([H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]2([H])[C@]1([H])O[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O5/c1-6(12(17)18)9-10(16)11-14(2,3)7-5-8(7)15(11,4)20-13(9)19/h7-8,10-11,16H,5H2,1-4H3,(H,17,18)/b9-6-/t7-,8+,10-,11-,15+/m1/s1

> <INCHI_KEY>
BJMXIQDWPYIHIE-VGPRWPRUSA-N

> <FORMULA>
C15H20O5

> <MOLECULAR_WEIGHT>
280.32

> <EXACT_MASS>
280.131073744

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.439548116304554

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1S,2S,4R,6S,7S,8Z)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

> <ALOGPS_LOGP>
1.93

> <JCHEM_LOGP>
1.3628800616666674

> <ALOGPS_LOGS>
-2.26

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.94853274714935

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5958409079788756

> <JCHEM_PKA_STRONGEST_BASIC>
-3.285128372575671

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
70.2675

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.55e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1S,2S,4R,6S,7S,8Z)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
    3.6418   -0.3115    2.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3370   -0.0137    3.3588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -0.5995    4.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0448   -0.4638    5.6084 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1774   -1.4232    4.8088 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3007    0.6704    2.8250 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0699    0.9084    3.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    1.2641    4.7820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0700    0.8061    2.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1265    0.2154    1.5750 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4483   -1.2717    1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2412    0.9267    0.8441 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1680    2.4071    0.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7739    1.3997   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3389    0.9597   -0.7056 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4670    2.1135   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3302   -0.2101   -1.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1517    0.4375    0.7014 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1548    1.2966    1.4685 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3911    1.3418    0.7687 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2693    0.5845    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4884   -0.6925    1.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2050   -1.0862    3.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1950   -1.7097    5.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3491   -1.4070    2.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6373   -1.7912    2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6164   -1.7662    0.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2205    0.4820    0.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.9381    0.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4075    3.0017    1.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4182    1.3030   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0073    2.4544   -2.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4922    1.8102   -1.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.9849   -0.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6860   -0.5891   -1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9548   -1.0421   -1.3727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7226    0.1046   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6467   -0.5308    0.5287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8020    2.3297    1.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9171    2.0613    1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
 10 18  1  0
  7  8  2  0
 10  9  1  0
 18 15  1  0
 15 14  1  0
 12 10  1  0
 14 12  1  0
 14 13  1  0
 12 13  1  0
  6  2  2  0
  9  7  1  0
  2  3  1  0
  7  6  1  0
 15 16  1  6
  3  5  1  0
 10 11  1  1
  6 19  1  0
 15 17  1  0
  3  4  2  0
 18 38  1  6
 19 18  1  0
 19 20  1  0
 19 39  1  1
  5 24  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
 12 28  1  6
 14 31  1  6
 13 29  1  0
 13 30  1  0
 16 32  1  0
 16 33  1  0
 16 34  1  0
 11 25  1  0
 11 26  1  0
 11 27  1  0
 17 35  1  0
 17 36  1  0
 17 37  1  0
 20 40  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       3.642  -0.312   2.685  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.337  -0.014   3.359  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.234  -0.600   4.712  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.045  -0.464   5.608  0.00  0.00           O+0
HETATM    5  O   UNK     0       1.177  -1.423   4.809  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.301   0.670   2.825  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.070   0.908   3.612  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.085   1.264   4.782  0.00  0.00           O+0
HETATM    9  O   UNK     0      -1.070   0.806   2.894  0.00  0.00           O+0
HETATM   10  C   UNK     0      -1.127   0.215   1.575  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.448  -1.272   1.743  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.241   0.927   0.844  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.168   2.407   0.562  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.774   1.400  -0.487  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.339   0.960  -0.706  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.467   2.114  -1.315  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.330  -0.210  -1.714  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.152   0.438   0.701  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.155   1.297   1.468  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.391   1.342   0.769  0.00  0.00           O+0
HETATM   21  H   UNK     0       4.269   0.585   2.649  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.488  -0.693   1.671  0.00  0.00           H+0
HETATM   23  H   UNK     0       4.205  -1.086   3.218  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.195  -1.710   5.746  0.00  0.00           H+0
HETATM   25  H   UNK     0      -2.349  -1.407   2.353  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.637  -1.791   2.265  0.00  0.00           H+0
HETATM   27  H   UNK     0      -1.616  -1.766   0.782  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.220   0.482   0.955  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.105   2.938   0.427  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.408   3.002   1.052  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.418   1.303  -1.352  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.007   2.454  -2.251  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.492   1.810  -1.550  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.504   2.985  -0.654  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.686  -0.589  -1.869  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.955  -1.042  -1.373  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.723   0.105  -2.688  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.647  -0.531   0.529  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.802   2.330   1.568  0.00  0.00           H+0
HETATM   40  H   UNK     0       2.917   2.061   1.161  0.00  0.00           H+0
CONECT    1    2   21   22   23                                             
CONECT    2    1    6    3                                                  
CONECT    3    2    5    4                                                  
CONECT    4    3                                                            
CONECT    5    3   24                                                       
CONECT    6    2    7   19                                                  
CONECT    7    8    9    6                                                  
CONECT    8    7                                                            
CONECT    9   10    7                                                       
CONECT   10   18    9   12   11                                             
CONECT   11   10   25   26   27                                             
CONECT   12   10   14   13   28                                             
CONECT   13   14   12   29   30                                             
CONECT   14   15   12   13   31                                             
CONECT   15   18   14   16   17                                             
CONECT   16   15   32   33   34                                             
CONECT   17   15   35   36   37                                             
CONECT   18   10   15   38   19                                             
CONECT   19    6   18   20   39                                             
CONECT   20   19   40                                                       
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    5                                                            
CONECT   25   11                                                            
CONECT   26   11                                                            
CONECT   27   11                                                            
CONECT   28   12                                                            
CONECT   29   13                                                            
CONECT   30   13                                                            
CONECT   31   14                                                            
CONECT   32   16                                                            
CONECT   33   16                                                            
CONECT   34   16                                                            
CONECT   35   17                                                            
CONECT   36   17                                                            
CONECT   37   17                                                            
CONECT   38   18                                                            
CONECT   39   19                                                            
CONECT   40   20                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   84    0
END

RDKit          3D

40 42  0  0  0  0  0  0  0  0999 V2000
    3.6418   -0.3115    2.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3370   -0.0137    3.3588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -0.5995    4.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0448   -0.4638    5.6084 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1774   -1.4232    4.8088 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3007    0.6704    2.8250 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0699    0.9084    3.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    1.2641    4.7820 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0700    0.8061    2.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1265    0.2154    1.5750 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4483   -1.2717    1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2412    0.9267    0.8441 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1680    2.4071    0.5623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7739    1.3997   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3389    0.9597   -0.7056 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4670    2.1135   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3302   -0.2101   -1.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1517    0.4375    0.7014 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1548    1.2966    1.4685 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3911    1.3418    0.7687 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2693    0.5845    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4884   -0.6925    1.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2050   -1.0862    3.2179 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1950   -1.7097    5.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3491   -1.4070    2.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6373   -1.7912    2.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6164   -1.7662    0.7820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2205    0.4820    0.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.9381    0.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4075    3.0017    1.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4182    1.3030   -1.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0073    2.4544   -2.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4922    1.8102   -1.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5038    2.9849   -0.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6860   -0.5891   -1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9548   -1.0421   -1.3727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7226    0.1046   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6467   -0.5308    0.5287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8020    2.3297    1.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9171    2.0613    1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0
 10 18  1  0
  7  8  2  0
 10  9  1  0
 18 15  1  0
 15 14  1  0
 12 10  1  0
 14 12  1  0
 14 13  1  0
 12 13  1  0
  6  2  2  0
  9  7  1  0
  2  3  1  0
  7  6  1  0
 15 16  1  6
  3  5  1  0
 10 11  1  1
  6 19  1  0
 15 17  1  0
  3  4  2  0
 18 38  1  6
 19 18  1  0
 19 20  1  0
 19 39  1  1
  5 24  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
 12 28  1  6
 14 31  1  6
 13 29  1  0
 13 30  1  0
 16 32  1  0
 16 33  1  0
 16 34  1  0
 11 25  1  0
 11 26  1  0
 11 27  1  0
 17 35  1  0
 17 36  1  0
 17 37  1  0
 20 40  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₅

Average Mass

280.3200 Da

Monoisotopic Mass

280.13107 Da

IUPAC Name

2-[(1S,2S,4R,6S,7S,8Z)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

Traditional Name

2-[(1S,2S,4R,6S,7S,8Z)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

CAS Registry Number

Not Available

SMILES

[H]OC(=O)C(=C1/C(=O)O[C@@]2(C([H])([H])[H])[C@@]3([H])C([H])([H])[C@@]3([H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]2([H])[C@]1([H])O[H])\C([H])([H])[H]

InChI Identifier

InChI=1S/C15H20O5/c1-6(12(17)18)9-10(16)11-14(2,3)7-5-8(7)15(11,4)20-13(9)19/h7-8,10-11,16H,5H2,1-4H3,(H,17,18)/b9-6-/t7-,8+,10-,11-,15+/m1/s1

InChI Key

BJMXIQDWPYIHIE-VGPRWPRUSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lindera aggregata	JEOL database	Gan, L. -S., et al, J. Nat. Prod. 72, 1497 (2009)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Monoterpenoid
Delta valerolactone
Delta_valerolactone
Dicarboxylic acid or derivatives
Oxane
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.93	ALOGPS
logP	1.36	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	3.6	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	70.27 m³·mol⁻¹	ChemAxon
Polarizability	28.44 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44254423

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Gan, L. -S., et al. (2009). Gan, L. -S., et al, J. Nat. Prod. 72, 1497 (2009). J. Nat. Prod..

Showing NP-Card for linderagalactone B (NP0034688)

MOL for NP0034688 (linderagalactone B)

3D MOL for NP0034688 (linderagalactone B)

3D SDF for NP0034688 (linderagalactone B)

3D-SDF for NP0034688 (linderagalactone B)

PDB for NP0034688 (linderagalactone B)

3D PDB for NP0034688 (linderagalactone B)

SMILES for NP0034688 (linderagalactone B)

INCHI for NP0034688 (linderagalactone B)

Structure for NP0034688 (linderagalactone B)

3D Structure for NP0034688 (linderagalactone B)