NP-MRD: Showing NP-Card for dapholdhamine B (NP0034610)

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Record Information

Version

2.0

Created at

2021-06-20 18:17:27 UTC

Updated at

2021-06-30 00:05:07 UTC

NP-MRD ID

NP0034610

Secondary Accession Numbers

None

Natural Product Identification

Common Name

dapholdhamine B

Provided By

JEOL Database JEOL Logo

Description

dapholdhamine B is found in Daphniphyllum oldhami. dapholdhamine B was first documented in 2009 (Zhang, Y., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202120173D          

 61 65  0  0  0  0            999 V2000
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   -1.8882    1.0061    0.3033 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.8188    0.6731   -0.9794 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4408    0.0197    0.2971 C   0  0  1  0  0  0  0  0  0  0  0  0
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    1.3274    1.7440    1.8590 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.0301    0.9941   -1.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4000    1.5666   -1.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9560    0.0012   -1.8370 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4375   -0.9560    0.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7753   -1.1415   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4396    0.3993   -0.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3031    1.9056    1.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2721    0.0639    2.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650    1.2701    3.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
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  9 26  1  0  0  0  0
 25 26  1  0  0  0  0
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  9 10  1  0  0  0  0
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 12 25  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
 18  7  1  0  0  0  0
 16 15  1  0  0  0  0
 15 14  1  0  0  0  0
 18 24  1  0  0  0  0
 16 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 18 16  1  0  0  0  0
 24  4  1  0  0  0  0
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  4  5  1  0  0  0  0
  4  2  1  0  0  0  0
 21 22  2  0  0  0  0
  2  1  1  0  0  0  0
 18 19  1  6  0  0  0
  2  3  1  0  0  0  0
 20 21  1  0  0  0  0
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  9 42  1  6  0  0  0
 26 60  1  0  0  0  0
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  2 30  1  1  0  0  0
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  1 29  1  0  0  0  0
  3 31  1  0  0  0  0
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  3 33  1  0  0  0  0
  8 39  1  0  0  0  0
  8 40  1  0  0  0  0
  8 41  1  0  0  0  0
 17 53  1  0  0  0  0
M  CHG  2  23  -1  25   1
M  END

     RDKit          3D

 61 65  0  0  0  0  0  0  0  0999 V2000
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   -1.8882    1.0061    0.3033 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.8188    0.6731   -0.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8439   -0.4578   -0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6450    1.1111    1.4039 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2866    0.4874    2.6519 C   0  0  0  0  0  0  0  0  0  0  0  0
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 24  4  1  0
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 21 22  2  0
  2  1  1  0
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  2  3  1  0
 20 21  1  0
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  7  9  1  0
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  3 33  1  0
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 17 53  1  0
M  CHG  2  23  -1  25   1
M  END


  Mrv1652306202120173D          

 61 65  0  0  0  0            999 V2000
   -2.8742    0.1726    1.1313 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3274    1.7440    1.8590 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.4000    1.5666   -1.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9560    0.0012   -1.8370 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4375   -0.9560    0.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7753   -1.1415   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4396    0.3993   -0.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3031    1.9056    1.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2721    0.0639    2.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650    1.2701    3.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8328   -0.9531    4.1515 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7074   -4.1314    0.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8196    2.3483    1.1154 H   0  0  0  0  0  0  0  0  0  0  0  0
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  9 26  1  0  0  0  0
 25 26  1  0  0  0  0
 25 24  1  0  0  0  0
 21 23  1  0  0  0  0
 19 20  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 25  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
 18  7  1  0  0  0  0
 16 15  1  0  0  0  0
 15 14  1  0  0  0  0
 18 24  1  0  0  0  0
 16 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 18 16  1  0  0  0  0
 24  4  1  0  0  0  0
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  4  5  1  0  0  0  0
  4  2  1  0  0  0  0
 21 22  2  0  0  0  0
  2  1  1  0  0  0  0
 18 19  1  6  0  0  0
  2  3  1  0  0  0  0
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  7  8  1  6  0  0  0
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  2 30  1  1  0  0  0
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  3 31  1  0  0  0  0
  3 32  1  0  0  0  0
  3 33  1  0  0  0  0
  8 39  1  0  0  0  0
  8 40  1  0  0  0  0
  8 41  1  0  0  0  0
 17 53  1  0  0  0  0
M  CHG  2  23  -1  25   1
M  END
> <DATABASE_ID>
NP0034610

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]12C([H])([H])C([H])([H])C([H])([H])[C@@]3([H])[C@]1([H])C([H])([H])[C@]1([H])C([H])([H])[N@@+]3([H])[C@@]3([H])[C@]([H])(C([H])([H])C([H])([H])[C@]1(C([H])([H])[H])[C@@]23C([H])([H])C([H])([H])C([O-])=O)C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C22H35NO3/c1-13(2)15-6-9-20(3)14-11-16-17-5-4-8-22(16,26)21(20,10-7-18(24)25)19(15)23(17)12-14/h13-17,19,26H,4-12H2,1-3H3,(H,24,25)/t14-,15-,16+,17+,19+,20+,21+,22+/m1/s1

> <INCHI_KEY>
XJVXLZXIMBRIAJ-MWRRWVQHSA-N

> <FORMULA>
C22H35NO3

> <MOLECULAR_WEIGHT>
361.526

> <EXACT_MASS>
361.261693991

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
39.73625630960046

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2R,3S,7S,8S,10S,12R,13S,14R)-2-(2-carboxyethyl)-3-hydroxy-1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,8}.0^{7,12}]hexadecan-12-ium

> <ALOGPS_LOGP>
0.99

> <JCHEM_LOGP>
0.2179184584525096

> <ALOGPS_LOGS>
-6.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.07121517489944

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.376192054668016

> <JCHEM_PKA_STRONGEST_BASIC>
9.60039295197785

> <JCHEM_POLAR_SURFACE_AREA>
64.8

> <JCHEM_REFRACTIVITY>
122.0346

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.42e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,3S,7S,8S,10S,12R,13S,14R)-2-(2-carboxyethyl)-3-hydroxy-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,8}.0^{7,12}]hexadecan-12-ium

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 61 65  0  0  0  0  0  0  0  0999 V2000
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    3.8439   -0.4578   -0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6450    1.1111    1.4039 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.3485   -0.5739    3.2410 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.4137    0.6321    2.3082 N   0  0  2  0  0  4  0  0  0  0  0  0
    1.3274    1.7440    1.8590 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4000    1.5666   -1.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8328   -0.9531    4.1515 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1491    0.9153    4.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8691   -2.4023    3.1142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422   -2.9938    4.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9331   -3.1313    3.8910 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0709   -3.6902    2.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1591   -3.2233    1.5616 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3790   -2.6769   -0.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7074   -4.1314    0.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6605   -4.1310   -1.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5674   -1.0985    1.6379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5008    1.0328    2.5489 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8196    2.3483    1.1154 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4764    2.4172    2.7130 H   0  0  0  0  0  0  0  0  0  0  0  0
  9 26  1  0
 25 26  1  0
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 21 23  1  0
 19 20  1  0
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 11 12  1  0
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  6  7  1  0
 18  7  1  0
 16 15  1  0
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 18 24  1  0
 16 11  1  0
 12 13  1  0
 13 14  1  0
 18 16  1  0
 24  4  1  0
 25 59  1  1
  4  5  1  0
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 21 22  2  0
  2  1  1  0
 18 19  1  6
  2  3  1  0
 20 21  1  0
  7  8  1  6
  7  9  1  0
 16 17  1  6
 19 54  1  0
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 20 56  1  0
 20 57  1  0
  5 35  1  0
  5 36  1  0
  6 37  1  0
  6 38  1  0
 24 58  1  1
  4 34  1  6
  9 42  1  6
 26 60  1  0
 26 61  1  0
 10 43  1  0
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 15 51  1  0
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  2 30  1  1
  1 27  1  0
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  3 31  1  0
  3 32  1  0
  3 33  1  0
  8 39  1  0
  8 40  1  0
  8 41  1  0
 17 53  1  0
M  CHG  2  23  -1  25   1
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.874   0.173   1.131  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.888   1.006   0.303  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.616   1.483  -0.964  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.569   0.231  -0.037  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.348   1.065  -0.948  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.819   0.673  -0.979  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.441   0.020   0.297  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.844  -0.458  -0.184  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.645   1.111   1.404  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.287   0.487   2.652  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.349  -0.574   3.241  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.000   0.054   3.592  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.052  -0.890   4.321  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.011  -2.307   3.777  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.266  -2.775   3.090  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.075  -1.737   2.262  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.334  -2.376   2.013  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.486  -1.157   0.883  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.375  -2.271  -0.239  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.466  -3.494  -0.129  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.014  -3.160  -0.168  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.481  -2.896  -1.304  0.00  0.00           O+0
HETATM   23  O   UNK     0      -1.559  -3.091   0.966  0.00  0.00           O-1
HETATM   24  C   UNK     0       0.142  -0.420   1.191  0.00  0.00           C+0
HETATM   25  N   UNK     0       0.414   0.632   2.308  0.00  0.00           N+1
HETATM   26  C   UNK     0       1.327   1.744   1.859  0.00  0.00           C+0
HETATM   27  H   UNK     0      -3.136  -0.757   0.615  0.00  0.00           H+0
HETATM   28  H   UNK     0      -2.472  -0.080   2.116  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.802   0.730   1.305  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.638   1.902   0.884  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.562   1.974  -0.709  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.841   0.642  -1.630  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.021   2.212  -1.522  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.886  -0.601  -0.669  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.262   2.134  -0.726  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.030   0.994  -1.979  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.400   1.567  -1.248  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.956   0.001  -1.837  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.438  -0.956   0.581  0.00  0.00           H+0
HETATM   40  H   UNK     0       3.775  -1.141  -1.036  0.00  0.00           H+0
HETATM   41  H   UNK     0       4.440   0.399  -0.523  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.303   1.906   1.031  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.272   0.064   2.438  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.465   1.270   3.401  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.833  -0.953   4.152  0.00  0.00           H+0
HETATM   46  H   UNK     0       1.149   0.915   4.258  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.957  -0.464   4.377  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.402  -0.959   5.360  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.869  -2.402   3.114  0.00  0.00           H+0
HETATM   50  H   UNK     0      -0.242  -2.994   4.602  0.00  0.00           H+0
HETATM   51  H   UNK     0       1.933  -3.131   3.891  0.00  0.00           H+0
HETATM   52  H   UNK     0       1.071  -3.690   2.535  0.00  0.00           H+0
HETATM   53  H   UNK     0       3.159  -3.223   1.562  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.379  -2.677  -0.409  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.102  -1.795  -1.185  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.707  -4.131   0.718  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.661  -4.131  -1.004  0.00  0.00           H+0
HETATM   58  H   UNK     0      -0.567  -1.099   1.638  0.00  0.00           H+0
HETATM   59  H   UNK     0      -0.501   1.033   2.549  0.00  0.00           H+0
HETATM   60  H   UNK     0       0.820   2.348   1.115  0.00  0.00           H+0
HETATM   61  H   UNK     0       1.476   2.417   2.713  0.00  0.00           H+0
CONECT    1    2   27   28   29                                             
CONECT    2    4    1    3   30                                             
CONECT    3    2   31   32   33                                             
CONECT    4   24    5    2   34                                             
CONECT    5    6    4   35   36                                             
CONECT    6    5    7   37   38                                             
CONECT    7    6   18    8    9                                             
CONECT    8    7   39   40   41                                             
CONECT    9   26   10    7   42                                             
CONECT   10    9   11   43   44                                             
CONECT   11   10   12   16   45                                             
CONECT   12   11   25   13   46                                             
CONECT   13   12   14   47   48                                             
CONECT   14   15   13   49   50                                             
CONECT   15   16   14   51   52                                             
CONECT   16   15   11   18   17                                             
CONECT   17   16   53                                                       
CONECT   18    7   24   16   19                                             
CONECT   19   20   18   54   55                                             
CONECT   20   19   21   56   57                                             
CONECT   21   23   22   20                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   25   18    4   58                                             
CONECT   25   26   24   12   59                                             
CONECT   26    9   25   60   61                                             
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    2                                                            
CONECT   31    3                                                            
CONECT   32    3                                                            
CONECT   33    3                                                            
CONECT   34    4                                                            
CONECT   35    5                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    6                                                            
CONECT   39    8                                                            
CONECT   40    8                                                            
CONECT   41    8                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   10                                                            
CONECT   45   11                                                            
CONECT   46   12                                                            
CONECT   47   13                                                            
CONECT   48   13                                                            
CONECT   49   14                                                            
CONECT   50   14                                                            
CONECT   51   15                                                            
CONECT   52   15                                                            
CONECT   53   17                                                            
CONECT   54   19                                                            
CONECT   55   19                                                            
CONECT   56   20                                                            
CONECT   57   20                                                            
CONECT   58   24                                                            
CONECT   59   25                                                            
CONECT   60   26                                                            
CONECT   61   26                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  130    0
END

RDKit          3D

61 65  0  0  0  0  0  0  0  0999 V2000
   -2.8742    0.1726    1.1313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8882    1.0061    0.3033 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6159    1.4826   -0.9643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5686    0.2313   -0.0365 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3475    1.0650   -0.9484 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8188    0.6731   -0.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4408    0.0197    0.2971 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8439   -0.4578   -0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6450    1.1111    1.4039 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2866    0.4874    2.6519 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3485   -0.5739    3.2410 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0003    0.0544    3.5920 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0515   -0.8895    4.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0112   -2.3068    3.7768 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2655   -2.7751    3.0895 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0747   -1.7369    2.2617 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3339   -2.3755    2.0127 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4856   -1.1569    0.8825 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3751   -2.2708   -0.2386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4663   -3.4938   -0.1291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0136   -3.1598   -0.1678 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4809   -2.8958   -1.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5594   -3.0912    0.9660 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.1421   -0.4203    1.1910 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4137    0.6321    2.3082 N   0  0  2  0  0  4  0  0  0  0  0  0
    1.3274    1.7440    1.8590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1360   -0.7565    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4719   -0.0797    2.1158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8017    0.7297    1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6375    1.9021    0.8841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5615    1.9737   -0.7094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8411    0.6423   -1.6298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0210    2.2121   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8864   -0.6009   -0.6687 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2622    2.1335   -0.7256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0301    0.9941   -1.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4000    1.5666   -1.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9560    0.0012   -1.8370 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4375   -0.9560    0.5808 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7753   -1.1415   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4396    0.3993   -0.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3031    1.9056    1.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2721    0.0639    2.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4650    1.2701    3.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8328   -0.9531    4.1515 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1491    0.9153    4.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9574   -0.4635    4.3774 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4016   -0.9594    5.3597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8691   -2.4023    3.1142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422   -2.9938    4.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9331   -3.1313    3.8910 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0709   -3.6902    2.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1591   -3.2233    1.5616 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3790   -2.6769   -0.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1017   -1.7951   -1.1854 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7074   -4.1314    0.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6605   -4.1310   -1.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5674   -1.0985    1.6379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5008    1.0328    2.5489 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8196    2.3483    1.1154 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4764    2.4172    2.7130 H   0  0  0  0  0  0  0  0  0  0  0  0
  9 26  1  0
 25 26  1  0
 25 24  1  0
 21 23  1  0
 19 20  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 25  1  0
  5  6  1  0
  6  7  1  0
 18  7  1  0
 16 15  1  0
 15 14  1  0
 18 24  1  0
 16 11  1  0
 12 13  1  0
 13 14  1  0
 18 16  1  0
 24  4  1  0
 25 59  1  1
  4  5  1  0
  4  2  1  0
 21 22  2  0
  2  1  1  0
 18 19  1  6
  2  3  1  0
 20 21  1  0
  7  8  1  6
  7  9  1  0
 16 17  1  6
 19 54  1  0
 19 55  1  0
 20 56  1  0
 20 57  1  0
  5 35  1  0
  5 36  1  0
  6 37  1  0
  6 38  1  0
 24 58  1  1
  4 34  1  6
  9 42  1  6
 26 60  1  0
 26 61  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  1
 12 46  1  1
 15 51  1  0
 15 52  1  0
 14 49  1  0
 14 50  1  0
 13 47  1  0
 13 48  1  0
  2 30  1  1
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 31  1  0
  3 32  1  0
  3 33  1  0
  8 39  1  0
  8 40  1  0
  8 41  1  0
 17 53  1  0
M  CHG  2  23  -1  25   1
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₅NO₃

Average Mass

361.5260 Da

Monoisotopic Mass

361.26169 Da

IUPAC Name

(1S,2R,3S,7S,8S,10S,12R,13S,14R)-2-(2-carboxyethyl)-3-hydroxy-1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,8}.0^{7,12}]hexadecan-12-ium

Traditional Name

(1S,2R,3S,7S,8S,10S,12R,13S,14R)-2-(2-carboxyethyl)-3-hydroxy-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,8}.0^{7,12}]hexadecan-12-ium

CAS Registry Number

Not Available

SMILES

[H]O[C@@]12C([H])([H])C([H])([H])C([H])([H])[C@@]3([H])[C@]1([H])C([H])([H])[C@]1([H])C([H])([H])[N@@+]3([H])[C@@]3([H])[C@]([H])(C([H])([H])C([H])([H])[C@]1(C([H])([H])[H])[C@@]23C([H])([H])C([H])([H])C([O-])=O)C([H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C22H35NO3/c1-13(2)15-6-9-20(3)14-11-16-17-5-4-8-22(16,26)21(20,10-7-18(24)25)19(15)23(17)12-14/h13-17,19,26H,4-12H2,1-3H3,(H,24,25)/t14-,15-,16+,17+,19+,20+,21+,22+/m1/s1

InChI Key

XJVXLZXIMBRIAJ-MWRRWVQHSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃ + CD₃OD ( 2 : 1 ), simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Daphniphyllum oldhamii	JEOL database	Zhang, Y., et al, J. Nat. Prod. 72, 1325 (2009)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.99	ALOGPS
logP	0.22	ChemAxon
logS	-6.1	ALOGPS
pKa (Strongest Acidic)	4.38	ChemAxon
pKa (Strongest Basic)	9.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	64.8 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	122.03 m³·mol⁻¹	ChemAxon
Polarizability	39.74 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Zhang, Y., et al. (2009). Zhang, Y., et al, J. Nat. Prod. 72, 1325 (2009). J. Nat. Prod..

Showing NP-Card for dapholdhamine B (NP0034610)

MOL for NP0034610 (dapholdhamine B)

3D MOL for NP0034610 (dapholdhamine B)

3D SDF for NP0034610 (dapholdhamine B)

3D-SDF for NP0034610 (dapholdhamine B)

PDB for NP0034610 (dapholdhamine B)

3D PDB for NP0034610 (dapholdhamine B)

SMILES for NP0034610 (dapholdhamine B)

INCHI for NP0034610 (dapholdhamine B)

Structure for NP0034610 (dapholdhamine B)

3D Structure for NP0034610 (dapholdhamine B)