NP-MRD: Showing NP-Card for 2S-hydroxyisobromosphaerol (NP0034000)

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Record Information

Version

2.0

Created at

2021-06-20 17:51:30 UTC

Updated at

2021-06-30 00:04:06 UTC

NP-MRD ID

NP0034000

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2S-hydroxyisobromosphaerol

Provided By

JEOL Database JEOL Logo

Description

2S-Hydroxyisobromosphaerol belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation. 2S-hydroxyisobromosphaerol is found in Sphaerococcus coronopifolius. 2S-hydroxyisobromosphaerol was first documented in 2008 (Smyrniotopoulos, V., et al.). Based on a literature review very few articles have been published on 2S-Hydroxyisobromosphaerol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202119513D          

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M  END

     RDKit          3D

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  Mrv1652306202119513D          

 56 58  0  0  0  0            999 V2000
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    0.3554    3.5443   -2.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2278    2.0079    0.2788 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5862    0.4852   -2.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5410   -0.9786   -2.7831 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2454    0.5239   -3.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7270   -0.4477    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2656   -1.5217   -0.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6616   -0.6771    0.7671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7315   -0.2944   -0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1058    1.3424    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5386    1.2613    2.5432 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8669    0.0988    0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4053    0.8709   -2.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5838    0.7046   -1.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6358    2.5446   -0.2913 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0031    3.0522   -1.9408 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9533    4.3712    0.1029 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5137    4.9817   -1.4647 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8037    4.7947   -1.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1658    3.5964   -3.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  8  1  0  0  0  0
 10 22  1  0  0  0  0
 11 18  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  5  4  1  0  0  0  0
  6  7  1  0  0  0  0
  9 10  1  0  0  0  0
  4  2  1  0  0  0  0
 15 14  1  0  0  0  0
 11 12  1  6  0  0  0
 14 13  1  0  0  0  0
 18 19  1  0  0  0  0
 13 11  1  0  0  0  0
 22 24  1  6  0  0  0
 10 11  1  0  0  0  0
 10 38  1  1  0  0  0
  4 15  1  0  0  0  0
 15 16  1  1  0  0  0
  9  8  2  0  0  0  0
 22 23  1  0  0  0  0
  9 15  1  0  0  0  0
  2  1  1  0  0  0  0
  2  3  1  0  0  0  0
  6  5  1  0  0  0  0
 16 17  1  0  0  0  0
  6 35  1  1  0  0  0
  5 33  1  0  0  0  0
  5 34  1  0  0  0  0
  4 32  1  1  0  0  0
  8 37  1  0  0  0  0
 14 44  1  0  0  0  0
 14 45  1  0  0  0  0
 13 42  1  0  0  0  0
 13 43  1  0  0  0  0
 18 48  1  1  0  0  0
 20 49  1  0  0  0  0
 20 50  1  0  0  0  0
 21 51  1  0  0  0  0
 21 52  1  0  0  0  0
  7 36  1  0  0  0  0
  2 28  1  1  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 12 41  1  0  0  0  0
 24 56  1  0  0  0  0
 16 46  1  0  0  0  0
 16 47  1  0  0  0  0
 23 53  1  0  0  0  0
 23 54  1  0  0  0  0
 23 55  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  3 29  1  0  0  0  0
  3 30  1  0  0  0  0
  3 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0034000

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C([H])=C2[C@]3([H])[C@@](O[H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@]([H])(Br)[C@@]3(C([H])([H])[H])C([H])([H])C([H])([H])[C@]2(C([H])([H])Br)[C@@]([H])(C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H32Br2O2/c1-12(2)14-9-13(23)10-15-17-18(3,7-8-20(14,15)11-21)16(22)5-6-19(17,4)24/h10,12-14,16-17,23-24H,5-9,11H2,1-4H3/t13-,14-,16-,17-,18+,19+,20-/m0/s1

> <INCHI_KEY>
YZPAZPZQHZGBFE-FSUCBALESA-N

> <FORMULA>
C20H32Br2O2

> <MOLECULAR_WEIGHT>
464.282

> <EXACT_MASS>
462.076906

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
43.072479466345385

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3S,4bS,5R,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,8a-dimethyl-1-(propan-2-yl)-1,2,3,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthrene-3,5-diol

> <ALOGPS_LOGP>
4.93

> <JCHEM_LOGP>
4.189025664333333

> <ALOGPS_LOGS>
-5.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.895343075644806

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.697937390846704

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5323769387129618

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
107.20379999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.41e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S,4bS,5R,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-1-isopropyl-5,8a-dimethyl-2,3,4b,6,7,8,9,10-octahydro-1H-phenanthrene-3,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 56 58  0  0  0  0  0  0  0  0999 V2000
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   -1.7000    3.2012   -1.7926 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0200    3.2236   -3.1795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2248    3.0208   -1.6502 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8942    1.9171   -0.7639 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0902    0.3963   -1.1520 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5929    0.0989   -2.5920 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2547   -0.4685   -0.1546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2169   -0.0447   -0.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4354    1.4562    0.3309 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0938    1.7171    1.7776 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1962    3.6127    2.2550 Br  0  0  0  0  0  0  0  0  0  0  0  0
    3.6002    0.0516   -0.9860 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0396   -1.7997   -1.4746 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.5393    0.9761   -1.7546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3302    2.4277   -1.3392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8714    2.8974   -1.5163 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7741    4.3355   -0.9767 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6032    2.9166   -2.9191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8038   -0.8837   -0.2049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1216   -0.9390    0.9590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2581    0.0921   -0.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3836    0.4250    1.9312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7257    1.0352    2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7001    2.1720    0.9836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6812    2.4573    2.4070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727    2.8084    0.7828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3959    1.1559   -1.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5461    2.3314   -1.1498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9915    4.1688   -1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5847    2.4534   -3.5845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3554    3.5443   -2.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2278    2.0079    0.2788 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5862    0.4852   -2.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5410   -0.9786   -2.7831 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2454    0.5239   -3.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7270   -0.4477    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2656   -1.5217   -0.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6616   -0.6771    0.7671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7315   -0.2944   -0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1058    1.3424    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5386    1.2613    2.5432 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8669    0.0988    0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4053    0.8709   -2.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5838    0.7046   -1.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6358    2.5446   -0.2913 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0031    3.0522   -1.9408 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9533    4.3712    0.1029 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5137    4.9817   -1.4647 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8037    4.7947   -1.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1658    3.5964   -3.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  8  1  0
 10 22  1  0
 11 18  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
  5  4  1  0
  6  7  1  0
  9 10  1  0
  4  2  1  0
 15 14  1  0
 11 12  1  6
 14 13  1  0
 18 19  1  0
 13 11  1  0
 22 24  1  6
 10 11  1  0
 10 38  1  1
  4 15  1  0
 15 16  1  1
  9  8  2  0
 22 23  1  0
  9 15  1  0
  2  1  1  0
  2  3  1  0
  6  5  1  0
 16 17  1  0
  6 35  1  1
  5 33  1  0
  5 34  1  0
  4 32  1  1
  8 37  1  0
 14 44  1  0
 14 45  1  0
 13 42  1  0
 13 43  1  0
 18 48  1  1
 20 49  1  0
 20 50  1  0
 21 51  1  0
 21 52  1  0
  7 36  1  0
  2 28  1  1
 12 39  1  0
 12 40  1  0
 12 41  1  0
 24 56  1  0
 16 46  1  0
 16 47  1  0
 23 53  1  0
 23 54  1  0
 23 55  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  3 29  1  0
  3 30  1  0
  3 31  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.558  -0.273   0.295  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.938   0.875   1.102  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.079   1.684   1.741  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.989   1.828   0.296  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.481   2.068  -1.139  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.700   3.201  -1.793  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.020   3.224  -3.180  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.225   3.021  -1.650  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.380   2.228  -0.742  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.894   1.917  -0.764  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.090   0.396  -1.152  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.593   0.099  -2.592  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.255  -0.469  -0.155  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.217  -0.045  -0.011  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.435   1.456   0.331  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.094   1.717   1.778  0.00  0.00           C+0
HETATM   17 Br   UNK     0       0.196   3.613   2.255  0.00  0.00          Br+0
HETATM   18  C   UNK     0       3.600   0.052  -0.986  0.00  0.00           C+0
HETATM   19 Br   UNK     0       4.040  -1.800  -1.475  0.00  0.00          Br+0
HETATM   20  C   UNK     0       4.539   0.976  -1.755  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.330   2.428  -1.339  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.871   2.897  -1.516  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.774   4.335  -0.977  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.603   2.917  -2.919  0.00  0.00           O+0
HETATM   25  H   UNK     0      -2.804  -0.884  -0.205  0.00  0.00           H+0
HETATM   26  H   UNK     0      -4.122  -0.939   0.959  0.00  0.00           H+0
HETATM   27  H   UNK     0      -4.258   0.092  -0.463  0.00  0.00           H+0
HETATM   28  H   UNK     0      -2.384   0.425   1.931  0.00  0.00           H+0
HETATM   29  H   UNK     0      -4.726   1.035   2.342  0.00  0.00           H+0
HETATM   30  H   UNK     0      -4.700   2.172   0.984  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.681   2.457   2.407  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.073   2.808   0.783  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.396   1.156  -1.743  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.546   2.331  -1.150  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.992   4.169  -1.370  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.585   2.453  -3.584  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.355   3.544  -2.404  0.00  0.00           H+0
HETATM   38  H   UNK     0       2.228   2.008   0.279  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.586   0.485  -2.775  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.541  -0.979  -2.783  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.245   0.524  -3.358  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.727  -0.448   0.835  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.266  -1.522  -0.461  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.662  -0.677   0.767  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.732  -0.294  -0.946  0.00  0.00           H+0
HETATM   46  H   UNK     0       1.106   1.342   1.946  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.539   1.261   2.543  0.00  0.00           H+0
HETATM   48  H   UNK     0       3.867   0.099   0.078  0.00  0.00           H+0
HETATM   49  H   UNK     0       4.405   0.871  -2.837  0.00  0.00           H+0
HETATM   50  H   UNK     0       5.584   0.705  -1.554  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.636   2.545  -0.291  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.003   3.052  -1.941  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.953   4.371   0.103  0.00  0.00           H+0
HETATM   54  H   UNK     0       3.514   4.982  -1.465  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.804   4.795  -1.181  0.00  0.00           H+0
HETATM   56  H   UNK     0       3.166   3.596  -3.329  0.00  0.00           H+0
CONECT    1    2   25   26   27                                             
CONECT    2    4    1    3   28                                             
CONECT    3    2   29   30   31                                             
CONECT    4    5    2   15   32                                             
CONECT    5    4    6   33   34                                             
CONECT    6    8    7    5   35                                             
CONECT    7    6   36                                                       
CONECT    8    6    9   37                                                  
CONECT    9   10    8   15                                                  
CONECT   10   22    9   11   38                                             
CONECT   11   18   12   13   10                                             
CONECT   12   11   39   40   41                                             
CONECT   13   14   11   42   43                                             
CONECT   14   15   13   44   45                                             
CONECT   15   14    4   16    9                                             
CONECT   16   15   17   46   47                                             
CONECT   17   16                                                            
CONECT   18   11   20   19   48                                             
CONECT   19   18                                                            
CONECT   20   18   21   49   50                                             
CONECT   21   20   22   51   52                                             
CONECT   22   10   21   24   23                                             
CONECT   23   22   53   54   55                                             
CONECT   24   22   56                                                       
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    2                                                            
CONECT   29    3                                                            
CONECT   30    3                                                            
CONECT   31    3                                                            
CONECT   32    4                                                            
CONECT   33    5                                                            
CONECT   34    5                                                            
CONECT   35    6                                                            
CONECT   36    7                                                            
CONECT   37    8                                                            
CONECT   38   10                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   12                                                            
CONECT   42   13                                                            
CONECT   43   13                                                            
CONECT   44   14                                                            
CONECT   45   14                                                            
CONECT   46   16                                                            
CONECT   47   16                                                            
CONECT   48   18                                                            
CONECT   49   20                                                            
CONECT   50   20                                                            
CONECT   51   21                                                            
CONECT   52   21                                                            
CONECT   53   23                                                            
CONECT   54   23                                                            
CONECT   55   23                                                            
CONECT   56   24                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  116    0
END

RDKit          3D

56 58  0  0  0  0  0  0  0  0999 V2000
   -3.5579   -0.2734    0.2952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9380    0.8750    1.1017 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0786    1.6837    1.7412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9887    1.8276    0.2955 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4812    2.0679   -1.1389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7000    3.2012   -1.7926 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0200    3.2236   -3.1795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2248    3.0208   -1.6502 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3800    2.2280   -0.7423 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8942    1.9171   -0.7639 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0902    0.3963   -1.1520 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5929    0.0989   -2.5920 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2547   -0.4685   -0.1546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2169   -0.0447   -0.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4354    1.4562    0.3309 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0938    1.7171    1.7776 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1962    3.6127    2.2550 Br  0  0  0  0  0  0  0  0  0  0  0  0
    3.6002    0.0516   -0.9860 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0396   -1.7997   -1.4746 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.5393    0.9761   -1.7546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3302    2.4277   -1.3392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8714    2.8974   -1.5163 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7741    4.3355   -0.9767 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6032    2.9166   -2.9191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8038   -0.8837   -0.2049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1216   -0.9390    0.9590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2581    0.0921   -0.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3836    0.4250    1.9312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7257    1.0352    2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7001    2.1720    0.9836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6812    2.4573    2.4070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727    2.8084    0.7828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3959    1.1559   -1.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5461    2.3314   -1.1498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9915    4.1688   -1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5847    2.4534   -3.5845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3554    3.5443   -2.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2278    2.0079    0.2788 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5862    0.4852   -2.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5410   -0.9786   -2.7831 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2454    0.5239   -3.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7270   -0.4477    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2656   -1.5217   -0.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6616   -0.6771    0.7671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7315   -0.2944   -0.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1058    1.3424    1.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5386    1.2613    2.5432 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8669    0.0988    0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4053    0.8709   -2.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5838    0.7046   -1.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6358    2.5446   -0.2913 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0031    3.0522   -1.9408 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9533    4.3712    0.1029 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5137    4.9817   -1.4647 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8037    4.7947   -1.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1658    3.5964   -3.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  8  1  0
 10 22  1  0
 11 18  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
  5  4  1  0
  6  7  1  0
  9 10  1  0
  4  2  1  0
 15 14  1  0
 11 12  1  6
 14 13  1  0
 18 19  1  0
 13 11  1  0
 22 24  1  6
 10 11  1  0
 10 38  1  1
  4 15  1  0
 15 16  1  1
  9  8  2  0
 22 23  1  0
  9 15  1  0
  2  1  1  0
  2  3  1  0
  6  5  1  0
 16 17  1  0
  6 35  1  1
  5 33  1  0
  5 34  1  0
  4 32  1  1
  8 37  1  0
 14 44  1  0
 14 45  1  0
 13 42  1  0
 13 43  1  0
 18 48  1  1
 20 49  1  0
 20 50  1  0
 21 51  1  0
 21 52  1  0
  7 36  1  0
  2 28  1  1
 12 39  1  0
 12 40  1  0
 12 41  1  0
 24 56  1  0
 16 46  1  0
 16 47  1  0
 23 53  1  0
 23 54  1  0
 23 55  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  3 29  1  0
  3 30  1  0
  3 31  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂Br₂O₂

Average Mass

464.2820 Da

Monoisotopic Mass

462.07691 Da

IUPAC Name

(1S,3S,4bS,5R,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,8a-dimethyl-1-(propan-2-yl)-1,2,3,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthrene-3,5-diol

Traditional Name

(1S,3S,4bS,5R,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-1-isopropyl-5,8a-dimethyl-2,3,4b,6,7,8,9,10-octahydro-1H-phenanthrene-3,5-diol

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])C([H])=C2[C@]3([H])[C@@](O[H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@]([H])(Br)[C@@]3(C([H])([H])[H])C([H])([H])C([H])([H])[C@]2(C([H])([H])Br)[C@@]([H])(C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H32Br2O2/c1-12(2)14-9-13(23)10-15-17-18(3,7-8-20(14,15)11-21)16(22)5-6-19(17,4)24/h10,12-14,16-17,23-24H,5-9,11H2,1-4H3/t13-,14-,16-,17-,18+,19+,20-/m0/s1

InChI Key

YZPAZPZQHZGBFE-FSUCBALESA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sphaerococcus coronopifolius	JEOL database	Smyrniotopoulos, V., et al, J. Nat. Prod. 71, 1386 (2008)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Hydrophenanthrenes

Direct Parent

Hydrophenanthrenes

Alternative Parents

Substituents

Hydrophenanthrene
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organobromide
Organohalogen compound
Alkyl halide
Alkyl bromide
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.93	ALOGPS
logP	4.19	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	14.7	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	107.2 m³·mol⁻¹	ChemAxon
Polarizability	43.07 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24696607

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25018716

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Smyrniotopoulos, V., et al. (2008). Smyrniotopoulos, V., et al, J. Nat. Prod. 71, 1386 (2008). J. Nat. Prod..

Showing NP-Card for 2S-hydroxyisobromosphaerol (NP0034000)

MOL for NP0034000 (2S-hydroxyisobromosphaerol)

3D MOL for NP0034000 (2S-hydroxyisobromosphaerol)

3D SDF for NP0034000 (2S-hydroxyisobromosphaerol)

3D-SDF for NP0034000 (2S-hydroxyisobromosphaerol)

PDB for NP0034000 (2S-hydroxyisobromosphaerol)

3D PDB for NP0034000 (2S-hydroxyisobromosphaerol)

SMILES for NP0034000 (2S-hydroxyisobromosphaerol)

INCHI for NP0034000 (2S-hydroxyisobromosphaerol)

Structure for NP0034000 (2S-hydroxyisobromosphaerol)

3D Structure for NP0034000 (2S-hydroxyisobromosphaerol)