NP-MRD: Showing NP-Card for pulchellamine B (NP0033602)

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Record Information

Version

2.0

Created at

2021-06-20 17:34:40 UTC

Updated at

2021-06-30 00:03:28 UTC

NP-MRD ID

NP0033602

Secondary Accession Numbers

None

Natural Product Identification

Common Name

pulchellamine B

Provided By

JEOL Database JEOL Logo

Description

Pulchellamine B belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative. pulchellamine B is found in Saussurea pulchella. pulchellamine B was first documented in 2008 (Yang, M. C., et al.). Based on a literature review very few articles have been published on pulchellamine B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202119343D          

 53 55  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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  Mrv1652306202119343D          

 53 55  0  0  0  0            999 V2000
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   -6.3891    1.3602    0.9302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7551    1.9975    0.6811 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0391    1.4257   -2.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3007   -0.2925   -2.7934 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9316    2.1639   -1.8663 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1119    0.7819   -1.9395 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7096    0.3617   -3.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0593    1.4692   -5.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9731   -0.8806   -5.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1635    0.8669   -5.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8922    2.2815   -5.8968 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4613    3.3056   -3.8460 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0  0  0  0
 19 18  1  0  0  0  0
 18 16  1  0  0  0  0
 16  7  1  0  0  0  0
  6  7  1  0  0  0  0
 26 25  1  0  0  0  0
  7  8  1  0  0  0  0
 25 23  1  0  0  0  0
 16 17  2  0  0  0  0
 23 21  1  0  0  0  0
 26 53  1  6  0  0  0
 21 20  1  0  0  0  0
 20 46  1  1  0  0  0
  4  6  1  0  0  0  0
  4  5  1  0  0  0  0
 21 22  2  3  0  0  0
 23 24  1  0  0  0  0
 20 26  1  0  0  0  0
  8  9  1  0  0  0  0
  2  1  2  3  0  0  0
  9 10  1  0  0  0  0
  6 19  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  2  3  1  0  0  0  0
 12 13  1  0  0  0  0
 26  2  1  0  0  0  0
 13 15  1  0  0  0  0
  3  4  1  0  0  0  0
 13 14  2  0  0  0  0
  3 29  1  0  0  0  0
  3 30  1  0  0  0  0
  4 31  1  6  0  0  0
 25 51  1  0  0  0  0
 25 52  1  0  0  0  0
 23 49  1  6  0  0  0
 22 47  1  0  0  0  0
 22 48  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  6 33  1  1  0  0  0
 19 45  1  6  0  0  0
  7 34  1  6  0  0  0
  8 35  1  0  0  0  0
  8 36  1  0  0  0  0
  5 32  1  0  0  0  0
 24 50  1  0  0  0  0
  9 37  1  0  0  0  0
 10 38  1  0  0  0  0
 10 39  1  0  0  0  0
 11 40  1  0  0  0  0
 11 41  1  0  0  0  0
 12 42  1  0  0  0  0
 12 43  1  0  0  0  0
 15 44  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0033602

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])C([H])([H])C([H])([H])N([H])C([H])([H])[C@]1([H])C(=O)O[C@]2([H])[C@@]3([H])C(=C([H])[H])[C@@]([H])(O[H])C([H])([H])[C@@]3([H])C(=C([H])[H])C([H])([H])[C@]([H])(O[H])[C@@]12[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H27NO6/c1-9-6-14(22)17-12(8-20-5-3-4-15(23)24)19(25)26-18(17)16-10(2)13(21)7-11(9)16/h11-14,16-18,20-22H,1-8H2,(H,23,24)/t11-,12-,13-,14-,16-,17+,18+/m0/s1

> <INCHI_KEY>
YEJKKCAGDPUPJK-OUQBJTOZSA-N

> <FORMULA>
C19H27NO6

> <MOLECULAR_WEIGHT>
365.426

> <EXACT_MASS>
365.183837593

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
38.02424117470762

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-({[(3R,3aR,4S,6aR,8S,9aR,9bR)-4,8-dihydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl]methyl}amino)butanoic acid

> <ALOGPS_LOGP>
-0.36

> <JCHEM_LOGP>
-3.065943788060831

> <ALOGPS_LOGS>
-1.92

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.374410405816086

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.660988916242457

> <JCHEM_PKA_STRONGEST_BASIC>
9.820855830843897

> <JCHEM_POLAR_SURFACE_AREA>
116.09

> <JCHEM_REFRACTIVITY>
93.0

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.38e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pulchellamine B

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 53 55  0  0  0  0  0  0  0  0999 V2000
   -0.8559    4.1931   -3.2994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5730    2.8822   -3.3990 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670    1.8521   -3.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7631    1.2483   -1.8173 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4987    2.1619   -0.9959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4347    0.9234   -1.1248 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5673   -0.2157   -0.1041 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0595    0.1988    1.2853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4614    0.6610    1.3278 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4021   -0.4608    1.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8513   -0.0370    1.4446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3818    1.1066    0.5787 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4942    0.7522   -0.8798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1546   -0.2851   -1.4232 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0586    1.7474   -1.5922 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8470   -0.7111   -0.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3288   -1.3721    0.8792 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5275   -0.3451   -1.1439 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6761    0.4069   -2.0359 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5280    1.5290   -2.6672 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6823    0.9772   -3.4909 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8992    0.6942   -3.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3200    0.9437   -4.9495 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2020   -0.3989   -5.3864 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9521    1.6159   -5.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8285    2.4114   -3.7193 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8611    4.5356   -3.0658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0988    4.9600   -3.4301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6348    2.3062   -3.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5355    1.0433   -3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3786    0.3449   -1.9005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5642    1.7524   -0.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0753    1.8151   -0.5897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1601   -1.0451   -0.5084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4323    1.0218    1.6521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9190   -0.6165    2.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6184    1.0679    2.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3224   -0.8828    0.1648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1507   -1.2606    1.8777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9389    0.2602    2.4977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4956   -0.9161    1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3891    1.3602    0.9302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7551    1.9975    0.6811 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0391    1.4257   -2.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3007   -0.2925   -2.7934 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9316    2.1639   -1.8663 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1119    0.7819   -1.9395 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7096    0.3617   -3.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0593    1.4692   -5.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9731   -0.8806   -5.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1635    0.8669   -5.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8922    2.2815   -5.8968 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4613    3.3056   -3.8460 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 18  1  0
 18 16  1  0
 16  7  1  0
  6  7  1  0
 26 25  1  0
  7  8  1  0
 25 23  1  0
 16 17  2  0
 23 21  1  0
 26 53  1  6
 21 20  1  0
 20 46  1  1
  4  6  1  0
  4  5  1  0
 21 22  2  3
 23 24  1  0
 20 26  1  0
  8  9  1  0
  2  1  2  3
  9 10  1  0
  6 19  1  0
 10 11  1  0
 11 12  1  0
  2  3  1  0
 12 13  1  0
 26  2  1  0
 13 15  1  0
  3  4  1  0
 13 14  2  0
  3 29  1  0
  3 30  1  0
  4 31  1  6
 25 51  1  0
 25 52  1  0
 23 49  1  6
 22 47  1  0
 22 48  1  0
  1 27  1  0
  1 28  1  0
  6 33  1  1
 19 45  1  6
  7 34  1  6
  8 35  1  0
  8 36  1  0
  5 32  1  0
 24 50  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 12 43  1  0
 15 44  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.856   4.193  -3.299  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.573   2.882  -3.399  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.667   1.852  -3.223  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.763   1.248  -1.817  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.499   2.162  -0.996  0.00  0.00           O+0
HETATM    6  C   UNK     0      -0.435   0.923  -1.125  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.567  -0.216  -0.104  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.060   0.199   1.285  0.00  0.00           C+0
HETATM    9  N   UNK     0      -2.461   0.661   1.328  0.00  0.00           N+0
HETATM   10  C   UNK     0      -3.402  -0.461   1.170  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.851  -0.037   1.445  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.382   1.107   0.579  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.494   0.752  -0.880  0.00  0.00           C+0
HETATM   14  O   UNK     0      -5.155  -0.285  -1.423  0.00  0.00           O+0
HETATM   15  O   UNK     0      -6.059   1.747  -1.592  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.847  -0.711  -0.026  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.329  -1.372   0.879  0.00  0.00           O+0
HETATM   18  O   UNK     0       1.528  -0.345  -1.144  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.676   0.407  -2.036  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.528   1.529  -2.667  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.682   0.977  -3.491  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.899   0.694  -3.002  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.320   0.944  -4.949  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.202  -0.399  -5.386  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.952   1.616  -5.028  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.829   2.411  -3.719  0.00  0.00           C+0
HETATM   27  H   UNK     0      -1.861   4.536  -3.066  0.00  0.00           H+0
HETATM   28  H   UNK     0      -0.099   4.960  -3.430  0.00  0.00           H+0
HETATM   29  H   UNK     0      -2.635   2.306  -3.479  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.536   1.043  -3.948  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.379   0.345  -1.901  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.564   1.752  -0.104  0.00  0.00           H+0
HETATM   33  H   UNK     0      -0.075   1.815  -0.590  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.160  -1.045  -0.508  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.432   1.022   1.652  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.919  -0.617   2.007  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.618   1.068   2.256  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.322  -0.883   0.165  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.151  -1.261   1.878  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.939   0.260   2.498  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.496  -0.916   1.317  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.389   1.360   0.930  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.755   1.998   0.681  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.039   1.426  -2.517  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.301  -0.293  -2.793  0.00  0.00           H+0
HETATM   46  H   UNK     0       1.932   2.164  -1.866  0.00  0.00           H+0
HETATM   47  H   UNK     0       4.112   0.782  -1.940  0.00  0.00           H+0
HETATM   48  H   UNK     0       4.710   0.362  -3.643  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.059   1.469  -5.563  0.00  0.00           H+0
HETATM   50  H   UNK     0       2.973  -0.881  -5.041  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.164   0.867  -5.153  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.892   2.281  -5.897  0.00  0.00           H+0
HETATM   53  H   UNK     0       1.461   3.306  -3.846  0.00  0.00           H+0
CONECT    1    2   27   28                                                  
CONECT    2    1    3   26                                                  
CONECT    3    2    4   29   30                                             
CONECT    4    6    5    3   31                                             
CONECT    5    4   32                                                       
CONECT    6    7    4   19   33                                             
CONECT    7   16    6    8   34                                             
CONECT    8    7    9   35   36                                             
CONECT    9    8   10   37                                                  
CONECT   10    9   11   38   39                                             
CONECT   11   10   12   40   41                                             
CONECT   12   11   13   42   43                                             
CONECT   13   12   15   14                                                  
CONECT   14   13                                                            
CONECT   15   13   44                                                       
CONECT   16   18    7   17                                                  
CONECT   17   16                                                            
CONECT   18   19   16                                                       
CONECT   19   20   18    6   45                                             
CONECT   20   19   21   46   26                                             
CONECT   21   23   20   22                                                  
CONECT   22   21   47   48                                                  
CONECT   23   25   21   24   49                                             
CONECT   24   23   50                                                       
CONECT   25   26   23   51   52                                             
CONECT   26   25   53   20    2                                             
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    3                                                            
CONECT   30    3                                                            
CONECT   31    4                                                            
CONECT   32    5                                                            
CONECT   33    6                                                            
CONECT   34    7                                                            
CONECT   35    8                                                            
CONECT   36    8                                                            
CONECT   37    9                                                            
CONECT   38   10                                                            
CONECT   39   10                                                            
CONECT   40   11                                                            
CONECT   41   11                                                            
CONECT   42   12                                                            
CONECT   43   12                                                            
CONECT   44   15                                                            
CONECT   45   19                                                            
CONECT   46   20                                                            
CONECT   47   22                                                            
CONECT   48   22                                                            
CONECT   49   23                                                            
CONECT   50   24                                                            
CONECT   51   25                                                            
CONECT   52   25                                                            
CONECT   53   26                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  110    0
END

RDKit          3D

53 55  0  0  0  0  0  0  0  0999 V2000
   -0.8559    4.1931   -3.2994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5730    2.8822   -3.3990 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670    1.8521   -3.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7631    1.2483   -1.8173 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4987    2.1619   -0.9959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4347    0.9234   -1.1248 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5673   -0.2157   -0.1041 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0595    0.1988    1.2853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4614    0.6610    1.3278 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4021   -0.4608    1.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8513   -0.0370    1.4446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3818    1.1066    0.5787 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4942    0.7522   -0.8798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1546   -0.2851   -1.4232 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0586    1.7474   -1.5922 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8470   -0.7111   -0.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3288   -1.3721    0.8792 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5275   -0.3451   -1.1439 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6761    0.4069   -2.0359 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5280    1.5290   -2.6672 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6823    0.9772   -3.4909 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8992    0.6942   -3.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3200    0.9437   -4.9495 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2020   -0.3989   -5.3864 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9521    1.6159   -5.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8285    2.4114   -3.7193 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8611    4.5356   -3.0658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0988    4.9600   -3.4301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6348    2.3062   -3.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5355    1.0433   -3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3786    0.3449   -1.9005 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0753    1.8151   -0.5897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1601   -1.0451   -0.5084 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9190   -0.6165    2.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6184    1.0679    2.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3224   -0.8828    0.1648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1507   -1.2606    1.8777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9389    0.2602    2.4977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4956   -0.9161    1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3891    1.3602    0.9302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7551    1.9975    0.6811 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0391    1.4257   -2.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3007   -0.2925   -2.7934 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9316    2.1639   -1.8663 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1119    0.7819   -1.9395 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7096    0.3617   -3.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0593    1.4692   -5.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9731   -0.8806   -5.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1635    0.8669   -5.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8922    2.2815   -5.8968 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4613    3.3056   -3.8460 H   0  0  0  0  0  0  0  0  0  0  0  0
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  6  7  1  0
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  4  6  1  0
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  8  9  1  0
  2  1  2  3
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  2  3  1  0
 12 13  1  0
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  3  4  1  0
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  1 28  1  0
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 15 44  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₇NO₆

Average Mass

365.4260 Da

Monoisotopic Mass

365.18384 Da

IUPAC Name

4-({[(3R,3aR,4S,6aR,8S,9aR,9bR)-4,8-dihydroxy-6,9-dimethylidene-2-oxo-dodecahydroazuleno[4,5-b]furan-3-yl]methyl}amino)butanoic acid

Traditional Name

pulchellamine B

CAS Registry Number

Not Available

SMILES

[H]OC(=O)C([H])([H])C([H])([H])C([H])([H])N([H])C([H])([H])[C@]1([H])C(=O)O[C@]2([H])[C@@]3([H])C(=C([H])[H])[C@@]([H])(O[H])C([H])([H])[C@@]3([H])C(=C([H])[H])C([H])([H])[C@]([H])(O[H])[C@@]12[H]

InChI Identifier

InChI=1S/C19H27NO6/c1-9-6-14(22)17-12(8-20-5-3-4-15(23)24)19(25)26-18(17)16-10(2)13(21)7-11(9)16/h11-14,16-18,20-22H,1-8H2,(H,23,24)/t11-,12-,13-,14-,16-,17+,18+/m0/s1

InChI Key

YEJKKCAGDPUPJK-OUQBJTOZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, DMSO-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Saussurea pulchella	JEOL database	Yang, M. C., et al, J. Nat. Prod. 71, 678 (2008)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Guaianolides and derivatives

Alternative Parents

Substituents

Guaianolide-skeleton
Sesquiterpenoid
Guaiane sesquiterpenoid
Gamma amino acid or derivatives
Hydroxy fatty acid
Amino fatty acid
Heterocyclic fatty acid
Dicarboxylic acid or derivatives
Fatty acyl
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Secondary alcohol
Amino acid
Carboxylic acid ester
Lactone
Amino acid or derivatives
Carboxylic acid derivative
Carboxylic acid
Secondary aliphatic amine
Oxacycle
Organoheterocyclic compound
Secondary amine
Amine
Organic oxide
Organopnictogen compound
Alcohol
Hydrocarbon derivative
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.36	ALOGPS
logP	-3.1	ChemAxon
logS	-1.9	ALOGPS
pKa (Strongest Acidic)	3.66	ChemAxon
pKa (Strongest Basic)	9.82	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	116.09 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	93 m³·mol⁻¹	ChemAxon
Polarizability	38.02 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23340804

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

24862637

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yang, M. C., et al. (2008). Yang, M. C., et al, J. Nat. Prod. 71, 678 (2008) . J. Nat. Prod..

Showing NP-Card for pulchellamine B (NP0033602)

MOL for NP0033602 (pulchellamine B)

3D MOL for NP0033602 (pulchellamine B)

3D SDF for NP0033602 (pulchellamine B)

3D-SDF for NP0033602 (pulchellamine B)

PDB for NP0033602 (pulchellamine B)

3D PDB for NP0033602 (pulchellamine B)

SMILES for NP0033602 (pulchellamine B)

INCHI for NP0033602 (pulchellamine B)

Structure for NP0033602 (pulchellamine B)

3D Structure for NP0033602 (pulchellamine B)