NP-MRD: Showing NP-Card for libocedrine C (NP0033233)

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Record Information

Version

2.0

Created at

2021-06-19 23:49:56 UTC

Updated at

2021-06-30 00:02:53 UTC

NP-MRD ID

NP0033233

Secondary Accession Numbers

None

Natural Product Identification

Common Name

libocedrine C

Provided By

JEOL Database JEOL Logo

Description

Libocedrine C belongs to the class of organic compounds known as guaianes. These are sesquiterpenoids with a structure based on the guaiane skeleton. Guaiane is a bicyclic compound consisting of a decahydroazulene moiety, substituted with two methyl groups and a 1-methylethyl group at the 1-, 4-, and 7-position, respectively. libocedrine C is found in Libocedrus chevalieri. libocedrine C was first documented in 2007 (Zhang, Y. -J., et al.). Based on a literature review very few articles have been published on Libocedrine C.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202101493D          

 41 42  0  0  0  0            999 V2000
   -0.9230   -2.2150    1.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8238   -0.9085    1.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2643   -0.4000    2.9777 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1261    0.0553    3.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946    0.1526    0.6560 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8476   -0.3606   -0.2477 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8408    0.7410   -0.6387 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3877    1.7459   -1.7165 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433    1.0825   -3.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3841    2.7843   -1.7509 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310    2.4055   -1.3798 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3287    3.6044   -2.2809 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8181    3.5503   -2.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2969    2.3839   -1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7277    1.9686   -1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1881    1.4605   -1.4352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4910    0.7627   -0.1045 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6341   -2.6017    0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3113   -2.9394    2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9694    0.4300    2.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7540   -1.1766    3.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5233   -0.6682    3.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1389    0.9515    1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4328   -1.1060    0.3080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4577   -0.8764   -1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7684    0.2607   -0.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1440    1.2867    0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7792    0.2194   -3.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621    0.7379   -3.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1993    1.7883   -3.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.2132   -0.8778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1116    2.8208   -0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0148    4.5419   -1.8315 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0781    3.5383   -3.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208    4.3506   -2.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536    1.0376   -2.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857    1.8115   -0.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3664    2.7276   -2.3471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0728    0.6970   -2.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2362   -0.0195   -0.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    1.4673    0.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 16  1  0  0  0  0
  6  5  1  0  0  0  0
  8  9  1  0  0  0  0
 17  5  1  0  0  0  0
 14 15  1  0  0  0  0
 16 11  1  0  0  0  0
  5  2  1  0  0  0  0
 11  8  1  0  0  0  0
 16 39  1  6  0  0  0
  7  6  1  0  0  0  0
 11 32  1  1  0  0  0
  2  3  1  0  0  0  0
 16 17  1  0  0  0  0
  2  1  2  3  0  0  0
  8  7  1  0  0  0  0
  3  4  1  0  0  0  0
 11 12  1  0  0  0  0
  8 10  1  6  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  6 24  1  0  0  0  0
  6 25  1  0  0  0  0
 17 40  1  0  0  0  0
 17 41  1  0  0  0  0
  5 23  1  1  0  0  0
 12 33  1  0  0  0  0
 12 34  1  0  0  0  0
 13 35  1  0  0  0  0
  9 28  1  0  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 15 38  1  0  0  0  0
  3 20  1  0  0  0  0
  3 21  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  4 22  1  0  0  0  0
 10 31  1  0  0  0  0
M  END

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
   -0.9230   -2.2150    1.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8238   -0.9085    1.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2643   -0.4000    2.9777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1261    0.0553    3.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946    0.1526    0.6560 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8476   -0.3606   -0.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8408    0.7410   -0.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3877    1.7459   -1.7165 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433    1.0825   -3.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3841    2.7843   -1.7509 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310    2.4055   -1.3798 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3287    3.6044   -2.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8181    3.5503   -2.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2969    2.3839   -1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7277    1.9686   -1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1881    1.4605   -1.4352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4910    0.7627   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6341   -2.6017    0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3113   -2.9394    2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9694    0.4300    2.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7540   -1.1766    3.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5233   -0.6682    3.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1389    0.9515    1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4328   -1.1060    0.3080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4577   -0.8764   -1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7684    0.2607   -0.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1440    1.2867    0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7792    0.2194   -3.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621    0.7379   -3.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1993    1.7883   -3.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.2132   -0.8778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1116    2.8208   -0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0148    4.5419   -1.8315 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0781    3.5383   -3.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208    4.3506   -2.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536    1.0376   -2.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857    1.8115   -0.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3664    2.7276   -2.3471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0728    0.6970   -2.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2362   -0.0195   -0.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    1.4673    0.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0
 13 14  2  0
 14 16  1  0
  6  5  1  0
  8  9  1  0
 17  5  1  0
 14 15  1  0
 16 11  1  0
  5  2  1  0
 11  8  1  0
 16 39  1  6
  7  6  1  0
 11 32  1  1
  2  3  1  0
 16 17  1  0
  2  1  2  3
  8  7  1  0
  3  4  1  0
 11 12  1  0
  8 10  1  6
  7 26  1  0
  7 27  1  0
  6 24  1  0
  6 25  1  0
 17 40  1  0
 17 41  1  0
  5 23  1  1
 12 33  1  0
 12 34  1  0
 13 35  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
  3 20  1  0
  3 21  1  0
  1 18  1  0
  1 19  1  0
  4 22  1  0
 10 31  1  0
M  END


  Mrv1652306202101493D          

 41 42  0  0  0  0            999 V2000
   -0.9230   -2.2150    1.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8238   -0.9085    1.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2643   -0.4000    2.9777 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1261    0.0553    3.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946    0.1526    0.6560 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8476   -0.3606   -0.2477 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8408    0.7410   -0.6387 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3877    1.7459   -1.7165 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433    1.0825   -3.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3841    2.7843   -1.7509 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310    2.4055   -1.3798 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3287    3.6044   -2.2809 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8181    3.5503   -2.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2969    2.3839   -1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7277    1.9686   -1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1881    1.4605   -1.4352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4910    0.7627   -0.1045 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6341   -2.6017    0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3113   -2.9394    2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9694    0.4300    2.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7540   -1.1766    3.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5233   -0.6682    3.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1389    0.9515    1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4328   -1.1060    0.3080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4577   -0.8764   -1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7684    0.2607   -0.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1440    1.2867    0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7792    0.2194   -3.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621    0.7379   -3.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1993    1.7883   -3.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.2132   -0.8778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1116    2.8208   -0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0148    4.5419   -1.8315 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0781    3.5383   -3.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208    4.3506   -2.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536    1.0376   -2.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857    1.8115   -0.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3664    2.7276   -2.3471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0728    0.6970   -2.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2362   -0.0195   -0.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    1.4673    0.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 16  1  0  0  0  0
  6  5  1  0  0  0  0
  8  9  1  0  0  0  0
 17  5  1  0  0  0  0
 14 15  1  0  0  0  0
 16 11  1  0  0  0  0
  5  2  1  0  0  0  0
 11  8  1  0  0  0  0
 16 39  1  6  0  0  0
  7  6  1  0  0  0  0
 11 32  1  1  0  0  0
  2  3  1  0  0  0  0
 16 17  1  0  0  0  0
  2  1  2  3  0  0  0
  8  7  1  0  0  0  0
  3  4  1  0  0  0  0
 11 12  1  0  0  0  0
  8 10  1  6  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  6 24  1  0  0  0  0
  6 25  1  0  0  0  0
 17 40  1  0  0  0  0
 17 41  1  0  0  0  0
  5 23  1  1  0  0  0
 12 33  1  0  0  0  0
 12 34  1  0  0  0  0
 13 35  1  0  0  0  0
  9 28  1  0  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 15 38  1  0  0  0  0
  3 20  1  0  0  0  0
  3 21  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  4 22  1  0  0  0  0
 10 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0033233

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C(=C([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@](O[H])(C([H])([H])[H])[C@@]2([H])C([H])([H])C([H])=C(C([H])([H])[H])[C@]2([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-10-4-5-14-13(10)8-12(11(2)9-16)6-7-15(14,3)17/h4,12-14,16-17H,2,5-9H2,1,3H3/t12-,13-,14-,15-/m0/s1

> <INCHI_KEY>
PSJVMHPTSMKIJY-AJNGGQMLSA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.355

> <EXACT_MASS>
236.177630013

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
27.83782058044835

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3aS,4S,7S,8aR)-7-(3-hydroxyprop-1-en-2-yl)-1,4-dimethyl-3,3a,4,5,6,7,8,8a-octahydroazulen-4-ol

> <ALOGPS_LOGP>
2.63

> <JCHEM_LOGP>
1.9103029863333332

> <ALOGPS_LOGS>
-2.68

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.884453039904805

> <JCHEM_PKA_STRONGEST_BASIC>
-0.42884663718874083

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
70.9827

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.98e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3aS,4S,7S,8aR)-7-(3-hydroxyprop-1-en-2-yl)-1,4-dimethyl-3a,5,6,7,8,8a-hexahydro-3H-azulen-4-ol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
   -0.9230   -2.2150    1.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8238   -0.9085    1.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2643   -0.4000    2.9777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1261    0.0553    3.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946    0.1526    0.6560 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8476   -0.3606   -0.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8408    0.7410   -0.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3877    1.7459   -1.7165 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433    1.0825   -3.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3841    2.7843   -1.7509 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310    2.4055   -1.3798 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3287    3.6044   -2.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8181    3.5503   -2.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2969    2.3839   -1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7277    1.9686   -1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1881    1.4605   -1.4352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4910    0.7627   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6341   -2.6017    0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3113   -2.9394    2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9694    0.4300    2.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7540   -1.1766    3.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5233   -0.6682    3.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1389    0.9515    1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4328   -1.1060    0.3080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4577   -0.8764   -1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7684    0.2607   -0.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1440    1.2867    0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7792    0.2194   -3.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621    0.7379   -3.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1993    1.7883   -3.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.2132   -0.8778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1116    2.8208   -0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0148    4.5419   -1.8315 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0781    3.5383   -3.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208    4.3506   -2.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536    1.0376   -2.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857    1.8115   -0.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3664    2.7276   -2.3471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0728    0.6970   -2.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2362   -0.0195   -0.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    1.4673    0.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0
 13 14  2  0
 14 16  1  0
  6  5  1  0
  8  9  1  0
 17  5  1  0
 14 15  1  0
 16 11  1  0
  5  2  1  0
 11  8  1  0
 16 39  1  6
  7  6  1  0
 11 32  1  1
  2  3  1  0
 16 17  1  0
  2  1  2  3
  8  7  1  0
  3  4  1  0
 11 12  1  0
  8 10  1  6
  7 26  1  0
  7 27  1  0
  6 24  1  0
  6 25  1  0
 17 40  1  0
 17 41  1  0
  5 23  1  1
 12 33  1  0
 12 34  1  0
 13 35  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
  3 20  1  0
  3 21  1  0
  1 18  1  0
  1 19  1  0
  4 22  1  0
 10 31  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.923  -2.215   1.321  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.824  -0.909   1.628  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.264  -0.400   2.978  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.126   0.055   3.693  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.295   0.153   0.656  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.848  -0.361  -0.248  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.841   0.741  -0.639  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.388   1.746  -1.716  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.443   1.083  -3.102  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.384   2.784  -1.751  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.031   2.406  -1.380  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.329   3.604  -2.281  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.818   3.550  -2.333  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.297   2.384  -1.884  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.728   1.969  -1.883  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.188   1.460  -1.435  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.491   0.763  -0.105  0.00  0.00           C+0
HETATM   18  H   UNK     0      -0.634  -2.602   0.348  0.00  0.00           H+0
HETATM   19  H   UNK     0      -1.311  -2.939   2.031  0.00  0.00           H+0
HETATM   20  H   UNK     0      -1.969   0.430   2.872  0.00  0.00           H+0
HETATM   21  H   UNK     0      -1.754  -1.177   3.575  0.00  0.00           H+0
HETATM   22  H   UNK     0       0.523  -0.668   3.667  0.00  0.00           H+0
HETATM   23  H   UNK     0       0.139   0.952   1.274  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.433  -1.106   0.308  0.00  0.00           H+0
HETATM   25  H   UNK     0       0.458  -0.876  -1.132  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.768   0.261  -0.981  0.00  0.00           H+0
HETATM   27  H   UNK     0       2.144   1.287   0.266  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.779   0.219  -3.190  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.462   0.738  -3.318  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.199   1.788  -3.901  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.405   3.213  -0.878  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.112   2.821  -0.362  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.015   4.542  -1.831  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.078   3.538  -3.293  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.421   4.351  -2.742  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.854   1.038  -2.445  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.086   1.812  -0.862  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.366   2.728  -2.347  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.073   0.697  -2.212  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.236  -0.020  -0.309  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.993   1.467   0.574  0.00  0.00           H+0
CONECT    1    2   18   19                                                  
CONECT    2    5    3    1                                                  
CONECT    3    2    4   20   21                                             
CONECT    4    3   22                                                       
CONECT    5    6   17    2   23                                             
CONECT    6    5    7   24   25                                             
CONECT    7    6    8   26   27                                             
CONECT    8    9   11    7   10                                             
CONECT    9    8   28   29   30                                             
CONECT   10    8   31                                                       
CONECT   11   16    8   32   12                                             
CONECT   12   13   11   33   34                                             
CONECT   13   12   14   35                                                  
CONECT   14   13   16   15                                                  
CONECT   15   14   36   37   38                                             
CONECT   16   14   11   39   17                                             
CONECT   17    5   16   40   41                                             
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    3                                                            
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    5                                                            
CONECT   24    6                                                            
CONECT   25    6                                                            
CONECT   26    7                                                            
CONECT   27    7                                                            
CONECT   28    9                                                            
CONECT   29    9                                                            
CONECT   30    9                                                            
CONECT   31   10                                                            
CONECT   32   11                                                            
CONECT   33   12                                                            
CONECT   34   12                                                            
CONECT   35   13                                                            
CONECT   36   15                                                            
CONECT   37   15                                                            
CONECT   38   15                                                            
CONECT   39   16                                                            
CONECT   40   17                                                            
CONECT   41   17                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   84    0
END

RDKit          3D

41 42  0  0  0  0  0  0  0  0999 V2000
   -0.9230   -2.2150    1.3205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8238   -0.9085    1.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2643   -0.4000    2.9777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1261    0.0553    3.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2946    0.1526    0.6560 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8476   -0.3606   -0.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8408    0.7410   -0.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3877    1.7459   -1.7165 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433    1.0825   -3.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3841    2.7843   -1.7509 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310    2.4055   -1.3798 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3287    3.6044   -2.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8181    3.5503   -2.3331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2969    2.3839   -1.8842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7277    1.9686   -1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1881    1.4605   -1.4352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4910    0.7627   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6341   -2.6017    0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3113   -2.9394    2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9694    0.4300    2.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7540   -1.1766    3.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5233   -0.6682    3.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1389    0.9515    1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4328   -1.1060    0.3080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4577   -0.8764   -1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7684    0.2607   -0.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1440    1.2867    0.2656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7792    0.2194   -3.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621    0.7379   -3.3185 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1993    1.7883   -3.9013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4047    3.2132   -0.8778 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1116    2.8208   -0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0148    4.5419   -1.8315 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0781    3.5383   -3.2929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208    4.3506   -2.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536    1.0376   -2.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0857    1.8115   -0.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3664    2.7276   -2.3471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0728    0.6970   -2.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2362   -0.0195   -0.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    1.4673    0.5741 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0
 13 14  2  0
 14 16  1  0
  6  5  1  0
  8  9  1  0
 17  5  1  0
 14 15  1  0
 16 11  1  0
  5  2  1  0
 11  8  1  0
 16 39  1  6
  7  6  1  0
 11 32  1  1
  2  3  1  0
 16 17  1  0
  2  1  2  3
  8  7  1  0
  3  4  1  0
 11 12  1  0
  8 10  1  6
  7 26  1  0
  7 27  1  0
  6 24  1  0
  6 25  1  0
 17 40  1  0
 17 41  1  0
  5 23  1  1
 12 33  1  0
 12 34  1  0
 13 35  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
  3 20  1  0
  3 21  1  0
  1 18  1  0
  1 19  1  0
  4 22  1  0
 10 31  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O₂

Average Mass

236.3550 Da

Monoisotopic Mass

236.17763 Da

IUPAC Name

(3aS,4S,7S,8aR)-7-(3-hydroxyprop-1-en-2-yl)-1,4-dimethyl-3,3a,4,5,6,7,8,8a-octahydroazulen-4-ol

Traditional Name

(3aS,4S,7S,8aR)-7-(3-hydroxyprop-1-en-2-yl)-1,4-dimethyl-3a,5,6,7,8,8a-hexahydro-3H-azulen-4-ol

CAS Registry Number

Not Available

SMILES

[H]OC([H])([H])C(=C([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@](O[H])(C([H])([H])[H])[C@@]2([H])C([H])([H])C([H])=C(C([H])([H])[H])[C@]2([H])C1([H])[H]

InChI Identifier

InChI=1S/C15H24O2/c1-10-4-5-14-13(10)8-12(11(2)9-16)6-7-15(14,3)17/h4,12-14,16-17H,2,5-9H2,1,3H3/t12-,13-,14-,15-/m0/s1

InChI Key

PSJVMHPTSMKIJY-AJNGGQMLSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Libocedrus chevalieri	JEOL database	Zhang, Y. -J., et al, J. Nat. Prod. 70, 1368 (2007)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as guaianes. These are sesquiterpenoids with a structure based on the guaiane skeleton. Guaiane is a bicyclic compound consisting of a decahydroazulene moiety, substituted with two methyl groups and a 1-methylethyl group at the 1-, 4-, and 7-position, respectively.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Guaianes

Alternative Parents

Substituents

Guaiane sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.63	ALOGPS
logP	1.91	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	16.88	ChemAxon
pKa (Strongest Basic)	-0.43	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	70.98 m³·mol⁻¹	ChemAxon
Polarizability	27.84 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23626330

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zhang, Y. -J., et al. (2007). Zhang, Y. -J., et al, J. Nat. Prod. 70, 1368 (2007). J. Nat. Prod..

Showing NP-Card for libocedrine C (NP0033233)

MOL for NP0033233 (libocedrine C)

3D MOL for NP0033233 (libocedrine C)

3D SDF for NP0033233 (libocedrine C)

3D-SDF for NP0033233 (libocedrine C)

PDB for NP0033233 (libocedrine C)

3D PDB for NP0033233 (libocedrine C)

SMILES for NP0033233 (libocedrine C)

INCHI for NP0033233 (libocedrine C)

Structure for NP0033233 (libocedrine C)

3D Structure for NP0033233 (libocedrine C)