NP-MRD: Showing NP-Card for topsentisterol D2 (NP0032578)

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Record Information

Version

2.0

Created at

2021-06-19 23:20:34 UTC

Updated at

2021-06-30 00:01:51 UTC

NP-MRD ID

NP0032578

Secondary Accession Numbers

None

Natural Product Identification

Common Name

topsentisterol D2

Provided By

JEOL Database JEOL Logo

Description

topsentisterol D2 is found in Topsentia sp. topsentisterol D2 was first documented in 2006 (Luo, X., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202101203D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306202101203D          

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M  END
> <DATABASE_ID>
NP0032578

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C([H])([H])C2=C([H])C(=O)C3=C(C([H])([H])C([H])([H])[C@@]4(C([H])([H])[H])[C@]3([H])C([H])([H])C([H])([H])[C@@]4([H])[C@@]([H])(C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])[H])[C@@]2(C([H])([H])[H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O2/c1-6-17(2)7-8-18(3)21-9-10-22-25-23(12-14-27(21,22)5)26(4)13-11-20(28)15-19(26)16-24(25)29/h7-8,16-18,20-22,28H,6,9-15H2,1-5H3/b8-7+/t17-,18+,20-,21-,22+,26-,27+/m0/s1

> <INCHI_KEY>
LTDDELFZQAJPOQ-SNQFJKAZSA-N

> <FORMULA>
C27H40O2

> <MOLECULAR_WEIGHT>
396.615

> <EXACT_MASS>
396.302830528

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
48.91885785884034

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,5S,11S,14S,15R)-5-hydroxy-2,15-dimethyl-14-[(2R,3E,5S)-5-methylhept-3-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7-dien-9-one

> <ALOGPS_LOGP>
5.79

> <JCHEM_LOGP>
5.994191853

> <ALOGPS_LOGS>
-5.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.33718332824004

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.105897308765527

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3390798286803083

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
122.98639999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.82e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5S,11S,14S,15R)-5-hydroxy-2,15-dimethyl-14-[(2R,3E,5S)-5-methylhept-3-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7-dien-9-one

> <JCHEM_VEBER_RULE>
1

$$$$

     RDKit          3D

 69 72  0  0  0  0  0  0  0  0999 V2000
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M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.965   1.099  -7.209  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.491   1.817  -5.953  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.886   0.879  -4.890  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.898  -0.165  -4.403  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.272   1.721  -3.787  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.663   1.800  -2.504  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.986   2.671  -1.470  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.962   3.798  -1.102  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.545   1.867  -0.216  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.078   2.776   0.861  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.999   1.897   1.702  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.980   0.502   1.061  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.308  -0.207   1.208  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.192  -0.388   0.200  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.880   0.158  -1.187  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.729   1.167  -1.248  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.517   0.737  -0.401  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.104  -0.556  -0.967  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.512  -1.183   0.359  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.413  -2.447  -0.528  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.724  -0.308  -0.074  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.090  -0.939   0.208  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.243  -1.339   1.672  0.00  0.00           C+0
HETATM   24  O   UNK     0       8.486  -2.018   1.824  0.00  0.00           O+0
HETATM   25  C   UNK     0       6.094  -2.245   2.117  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.754  -1.618   1.808  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.867  -1.427   2.795  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.576  -0.757   2.567  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.776  -0.654   3.490  0.00  0.00           O+0
HETATM   30  H   UNK     0      -3.824   0.453  -7.003  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.164   0.489  -7.638  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.276   1.829  -7.963  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.331   2.379  -5.525  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.740   2.560  -6.253  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.056   0.326  -5.351  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.474  -0.785  -3.605  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.182  -0.845  -5.212  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.812   0.306  -4.024  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.414   2.316  -4.101  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.523   1.231  -2.157  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.102   3.146  -1.914  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.484   4.547  -0.464  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.839   3.411  -0.571  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.316   4.321  -1.998  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.444   1.417   0.231  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.694   3.240   1.484  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.663   3.587   0.410  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.006   2.332   1.724  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.650   1.851   2.740  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.203  -0.092   1.564  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.645  -0.682  -1.852  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.756   0.658  -1.611  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.109   2.140  -0.911  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.441   1.305  -2.297  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.279  -0.487  -2.043  0.00  0.00           H+0
HETATM   56  H   UNK     0      -1.060  -0.783  -0.483  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.546  -1.424  -0.808  0.00  0.00           H+0
HETATM   58  H   UNK     0       4.355  -2.191  -1.591  0.00  0.00           H+0
HETATM   59  H   UNK     0       3.523  -3.038  -0.279  0.00  0.00           H+0
HETATM   60  H   UNK     0       5.279  -3.109  -0.420  0.00  0.00           H+0
HETATM   61  H   UNK     0       5.677   0.664   0.437  0.00  0.00           H+0
HETATM   62  H   UNK     0       5.685  -0.096  -1.149  0.00  0.00           H+0
HETATM   63  H   UNK     0       7.886  -0.232  -0.062  0.00  0.00           H+0
HETATM   64  H   UNK     0       7.249  -1.811  -0.439  0.00  0.00           H+0
HETATM   65  H   UNK     0       7.276  -0.437   2.295  0.00  0.00           H+0
HETATM   66  H   UNK     0       8.609  -2.200   2.772  0.00  0.00           H+0
HETATM   67  H   UNK     0       6.204  -2.453   3.190  0.00  0.00           H+0
HETATM   68  H   UNK     0       6.174  -3.226   1.634  0.00  0.00           H+0
HETATM   69  H   UNK     0       4.048  -1.738   3.818  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2    3    1   33   34                                             
CONECT    3    5    2    4   35                                             
CONECT    4    3   36   37   38                                             
CONECT    5    6    3   39                                                  
CONECT    6    7    5   40                                                  
CONECT    7    9    8    6   41                                             
CONECT    8    7   42   43   44                                             
CONECT    9   10   17    7   45                                             
CONECT   10   11    9   46   47                                             
CONECT   11   12   10   48   49                                             
CONECT   12   11   13   17   50                                             
CONECT   13   28   14   12                                                  
CONECT   14   19   13   15                                                  
CONECT   15   14   16   51   52                                             
CONECT   16   17   15   53   54                                             
CONECT   17    9   18   16   12                                             
CONECT   18   17   55   56   57                                             
CONECT   19   14   20   21   26                                             
CONECT   20   19   58   59   60                                             
CONECT   21   22   19   61   62                                             
CONECT   22   23   21   63   64                                             
CONECT   23   22   25   24   65                                             
CONECT   24   23   66                                                       
CONECT   25   23   26   67   68                                             
CONECT   26   27   25   19                                                  
CONECT   27   26   28   69                                                  
CONECT   28   27   13   29                                                  
CONECT   29   28                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    2                                                            
CONECT   34    2                                                            
CONECT   35    3                                                            
CONECT   36    4                                                            
CONECT   37    4                                                            
CONECT   38    4                                                            
CONECT   39    5                                                            
CONECT   40    6                                                            
CONECT   41    7                                                            
CONECT   42    8                                                            
CONECT   43    8                                                            
CONECT   44    8                                                            
CONECT   45    9                                                            
CONECT   46   10                                                            
CONECT   47   10                                                            
CONECT   48   11                                                            
CONECT   49   11                                                            
CONECT   50   12                                                            
CONECT   51   15                                                            
CONECT   52   15                                                            
CONECT   53   16                                                            
CONECT   54   16                                                            
CONECT   55   18                                                            
CONECT   56   18                                                            
CONECT   57   18                                                            
CONECT   58   20                                                            
CONECT   59   20                                                            
CONECT   60   20                                                            
CONECT   61   21                                                            
CONECT   62   21                                                            
CONECT   63   22                                                            
CONECT   64   22                                                            
CONECT   65   23                                                            
CONECT   66   24                                                            
CONECT   67   25                                                            
CONECT   68   25                                                            
CONECT   69   27                                                            
MASTER        0    0    0    0    0    0    0    0   69    0  144    0
END

RDKit          3D

69 72  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₂

Average Mass

396.6150 Da

Monoisotopic Mass

396.30283 Da

IUPAC Name

(2S,5S,11S,14S,15R)-5-hydroxy-2,15-dimethyl-14-[(2R,3E,5S)-5-methylhept-3-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7-dien-9-one

Traditional Name

(2S,5S,11S,14S,15R)-5-hydroxy-2,15-dimethyl-14-[(2R,3E,5S)-5-methylhept-3-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7-dien-9-one

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])C([H])([H])C2=C([H])C(=O)C3=C(C([H])([H])C([H])([H])[C@@]4(C([H])([H])[H])[C@]3([H])C([H])([H])C([H])([H])[C@@]4([H])[C@@]([H])(C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])[H])[C@@]2(C([H])([H])[H])C([H])([H])C1([H])[H]

InChI Identifier

InChI=1S/C27H40O2/c1-6-17(2)7-8-18(3)21-9-10-22-25-23(12-14-27(21,22)5)26(4)13-11-20(28)15-19(26)16-24(25)29/h7-8,16-18,20-22,28H,6,9-15H2,1-5H3/b8-7+/t17-,18+,20-,21-,22+,26-,27+/m0/s1

InChI Key

LTDDELFZQAJPOQ-SNQFJKAZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃OD, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Topsentia sp.	JEOL database	Luo, X., et al, J. Nat. Prod. 69, 1760 (2006)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.79	ALOGPS
logP	5.99	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	17.11	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	122.99 m³·mol⁻¹	ChemAxon
Polarizability	48.92 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Luo, X., et al. (2006). Luo, X., et al, J. Nat. Prod. 69, 1760 (2006) . J. Nat. Prod..

Showing NP-Card for topsentisterol D2 (NP0032578)

MOL for NP0032578 (topsentisterol D2)

3D MOL for NP0032578 (topsentisterol D2)

3D SDF for NP0032578 (topsentisterol D2)

3D-SDF for NP0032578 (topsentisterol D2)

PDB for NP0032578 (topsentisterol D2)

3D PDB for NP0032578 (topsentisterol D2)

SMILES for NP0032578 (topsentisterol D2)

INCHI for NP0032578 (topsentisterol D2)

Structure for NP0032578 (topsentisterol D2)

3D Structure for NP0032578 (topsentisterol D2)