Np mrd loader

Record Information
Version2.0
Created at2021-06-19 22:55:04 UTC
Updated at2021-06-30 00:00:55 UTC
NP-MRD IDNP0031990
Secondary Accession NumbersNone
Natural Product Identification
Common Name(8S,8'R,9S)-cubebin
Provided ByJEOL DatabaseJEOL Logo
Description (8S,8'R,9S)-cubebin is found in Abies sachalinensis, Araucaria angustifolia, Aristolochia lagesiana, Aristolochia pubescens, Aristolochia triangularis, Bauhinia tarapotensis, Betula pendula , Coptis japonica var. dissecta , Cryptomeria japonica, Cynomorium songaricum, Fagraea racemosa, Fitzroya cupressoides, Gaultheria yunnanensis, Hedyotis chrysotricha, Heritiera littoralis , Isatis indigotica , Justicia diffusa var. prostrata, Justicia flava , Justicia glauca, Justicia tranquebariensis , Larix dahurica, Larix leptolepis, Larix sibirica, Lychnophora ericoides , Melodinus morsei, Picea excelsa , Pinus massoniana, Pinus sylvestris , Piper cubeba , Piper nigrum , Reseda suffruticosa, Rubia akane , Schisandra nigra, Symplocos lancifolia, Taxus baccata , Taxus cuspidata , Taxus mairei , Tinospora smilacina , Ulmus davidiana var. japonica, Urtica dioica , Wikstroemia glabra and Zanthoxylum naranjillo. (8S,8'R,9S)-cubebin was first documented in 2006 (Pascoli, I. C., et al.).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC20H20O6
Average Mass356.3740 Da
Monoisotopic Mass356.12599 Da
IUPAC Name(2S,3S,4R)-3,4-bis[(2H-1,3-benzodioxol-5-yl)methyl]oxolan-2-ol
Traditional Name(2S,3S,4R)-3,4-bis(2H-1,3-benzodioxol-5-ylmethyl)oxolan-2-ol
CAS Registry NumberNot Available
SMILES
[H]O[C@@]1([H])OC([H])([H])[C@]([H])(C([H])([H])C2=C([H])C3=C(OC([H])([H])O3)C([H])=C2[H])[C@]1([H])C([H])([H])C1=C([H])C2=C(OC([H])([H])O2)C([H])=C1[H]
InChI Identifier
InChI=1S/C20H20O6/c21-20-15(6-13-2-4-17-19(8-13)26-11-24-17)14(9-22-20)5-12-1-3-16-18(7-12)25-10-23-16/h1-4,7-8,14-15,20-21H,5-6,9-11H2/t14-,15-,20-/m0/s1
InChI KeyDIYWRNLYKJKHAM-AVYPCKFXSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 100 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 125 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 150 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 175 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 225 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 25 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 250 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, chcl3, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Abies sachalinensisPlant
Araucaria angustifoliaPlant
Aristolochia lagesianaJEOL database
    • Pascoli, I. C., et al, Phytochemistry 67, 735 (2006)
Aristolochia pubescensJEOL database
    • Pascoli, I. C., et al, Phytochemistry 67, 735 (2006)
Aristolochia triangularisPlant
Bauhinia tarapotensisPlant
Betula pendulaPlant
Coptis japonica var. dissectaPlant
Cryptomeria japonicaPlant
Cynomorium songaricumPlant
Fagraea racemosaPlant
Fitzroya cupressoidesPlant
Gaultheria yunnanensisPlant
Hedyotis chrysotrichaPlant
Heritiera littoralisPlant
Isatis tinctoriaPlant
Justicia diffusa var. prostrataPlant
Justicia flavaPlant
Justicia glaucaPlant
Justicia tranquebariensisPlant
Larix dahuricaPlant
Larix leptolepisPlant
Larix sibiricaPlant
Lychnophora ericoidesPlant
Melodinus morseiPlant
Picea abiesPlant
Pinus massonianaPlant
Pinus sylvestrisPlant
Piper cubebaPlant
Piper nigrum L.Plant
Reseda suffruticosaPlant
Rubia akanePlant
Schisandra nigraPlant
Symplocos lancifoliaPlant
Taxus baccataPlant
Taxus cuspidataPlant
Taxus maireiPlant
Tinospora smilacinaPlant
Ulmus davidiana var. japonicaPlant
Urtica dioicaPlant
Wikstroemia glabraPlant
Zanthoxylum naranjilloPlant
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.54ALOGPS
logP3.18ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)12.17ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area66.38 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity91.51 m³·mol⁻¹ChemAxon
Polarizability37.73 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General References
  1. Pascoli, I. C., et al. (2006). Pascoli, I. C., et al, Phytochemistry 67, 735 (2006). Phytochem..