NP-MRD: Showing NP-Card for umbellacin E (NP0031916)

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Record Information

Version

2.0

Created at

2021-06-19 22:51:56 UTC

Updated at

2021-06-30 00:00:48 UTC

NP-MRD ID

NP0031916

Secondary Accession Numbers

None

Natural Product Identification

Common Name

umbellacin E

Provided By

JEOL Database JEOL Logo

Description

umbellacin E is found in Xenia umbellata. umbellacin E was first documented in 2006 (El-Gamal, A. A. H., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202100513D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306202100513D          

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    0.7318    1.0897   -0.6635 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2385    1.4058   -0.7693 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1526    0.9958    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9619    0.1740    1.3967 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9415   -1.0154    1.4712 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7314   -1.9292    0.3763 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8705   -1.8371    2.7898 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5015   -2.4794    3.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2910   -1.0144    4.0075 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8146   -2.9172    2.6673 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6447    2.2472   -1.9810 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0684    2.3619   -2.0906 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4792    3.0790   -3.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9752    3.1413   -3.2061 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7436    3.6007   -3.9959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9450    1.1073   -2.4044 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -3.7418    3.7635   -1.0773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8871    3.2077    0.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6017    1.5267    0.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0478    2.9710   -1.5389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3883    3.0674    0.1545 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5466    0.6094    0.3034 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1932    1.2881   -0.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1292    0.8429    2.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9404   -0.1983    1.4770 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9698   -0.6520    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7639   -1.9746    0.2126 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5331   -3.1303    3.9150 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2066   -3.1207    2.1955 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7191   -1.7317    3.1933 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3835   -1.6523    4.8943 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5761   -0.2182    4.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2772   -0.5633    3.8499 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7440   -3.2122    1.7357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2670    1.7800   -2.8958 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2218    3.2528   -1.8785 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2929    3.7201   -4.0780 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3862    2.1320   -3.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3474    3.6357   -2.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2563    1.7316   -2.9848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6789    0.7287   -3.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 25  1  0  0  0  0
 15 14  1  0  0  0  0
  5  3  1  0  0  0  0
  5  6  1  0  0  0  0
  3  4  2  0  0  0  0
 11 13  1  0  0  0  0
  6 30  1  0  0  0  0
 11 30  1  0  0  0  0
 13 14  1  0  0  0  0
 11 12  1  6  0  0  0
 19 20  1  0  0  0  0
  9 10  1  0  0  0  0
 11  9  1  0  0  0  0
  6  7  2  0  0  0  0
  8  7  1  0  0  0  0
 19 18  1  0  0  0  0
  9  8  1  0  0  0  0
  3  2  1  0  0  0  0
  2  1  1  0  0  0  0
 15 16  1  0  0  0  0
 25 26  1  0  0  0  0
 21 22  1  0  0  0  0
 26 27  1  0  0  0  0
 16 17  2  0  0  0  0
 27 28  1  0  0  0  0
 19 21  1  0  0  0  0
 27 29  2  0  0  0  0
 17 18  1  0  0  0  0
 21 23  1  0  0  0  0
  5 15  1  0  0  0  0
 21 24  1  6  0  0  0
 19 51  1  6  0  0  0
 22 53  1  0  0  0  0
 22 54  1  0  0  0  0
 22 55  1  0  0  0  0
 20 52  1  0  0  0  0
  5 34  1  6  0  0  0
 15 47  1  1  0  0  0
 14 45  1  0  0  0  0
 14 46  1  0  0  0  0
  8 36  1  0  0  0  0
  8 37  1  0  0  0  0
 13 43  1  0  0  0  0
 13 44  1  0  0  0  0
  9 38  1  6  0  0  0
 17 48  1  0  0  0  0
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 18 50  1  0  0  0  0
 25 60  1  0  0  0  0
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  7 35  1  0  0  0  0
  1 31  1  0  0  0  0
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 28 62  1  0  0  0  0
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 23 56  1  0  0  0  0
 23 57  1  0  0  0  0
 23 58  1  0  0  0  0
 24 59  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0031916

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]([H])(C([H])([H])C(\[H])=C(\C([H])([H])OC(=O)C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])C(=C([H])C([H])([H])[C@@]2([H])O[H])[C@]1([H])C(=O)OC([H])([H])[H])C(O[H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H36O7/c1-14(24)30-13-16(7-8-18(25)22(2,3)28)17-10-11-23(4)12-15(6-9-19(23)26)20(17)21(27)29-5/h6-7,17-20,25-26,28H,8-13H2,1-5H3/b16-7-/t17-,18+,19-,20+,23+/m1/s1

> <INCHI_KEY>
SKUXBRSPQCLBOB-POOUBWEISA-N

> <FORMULA>
C23H36O7

> <MOLECULAR_WEIGHT>
424.534

> <EXACT_MASS>
424.246103499

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.56922831759215

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2R,3S,6S,7R)-3-[(2E,5S)-1-(acetyloxy)-5,6-dihydroxy-6-methylhept-2-en-2-yl]-7-hydroxy-6-methylbicyclo[4.3.1]dec-1(9)-ene-2-carboxylate

> <ALOGPS_LOGP>
2.04

> <JCHEM_LOGP>
0.9918138453333325

> <ALOGPS_LOGS>
-3.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.2986172733752

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.803460174819932

> <JCHEM_PKA_STRONGEST_BASIC>
-0.874906876639801

> <JCHEM_POLAR_SURFACE_AREA>
113.29000000000002

> <JCHEM_REFRACTIVITY>
113.57719999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.22e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2R,3S,6S,7R)-3-[(2E,5S)-1-(acetyloxy)-5,6-dihydroxy-6-methylhept-2-en-2-yl]-7-hydroxy-6-methylbicyclo[4.3.1]dec-1(9)-ene-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 66 67  0  0  0  0  0  0  0  0999 V2000
    1.9552   -3.0676   -2.7413 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2974   -1.8013   -2.8004 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0960    2.4221   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7318    1.0897   -0.6635 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2385    1.4058   -0.7693 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1526    0.9958    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9619    0.1740    1.3967 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9415   -1.0154    1.4712 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7314   -1.9292    0.3763 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5015   -2.4794    3.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2910   -1.0144    4.0075 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8146   -2.9172    2.6673 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6447    2.2472   -1.9810 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0684    2.3619   -2.0906 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4792    3.0790   -3.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9752    3.1413   -3.2061 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7436    3.6007   -3.9959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9450    1.1073   -2.4044 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1349   -3.4039   -3.7662 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9197   -2.9717   -2.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5675    0.4411   -2.7492 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0430   -1.1423   -1.1506 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8937    2.9978   -2.6644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4068    3.8531   -2.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7418    3.7635   -1.0773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8871    3.2077    0.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6017    1.5267    0.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3883    3.0674    0.1545 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5466    0.6094    0.3034 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1932    1.2881   -0.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1292    0.8429    2.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9404   -0.1983    1.4770 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9698   -0.6520    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7639   -1.9746    0.2126 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5331   -3.1303    3.9150 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2066   -3.1207    2.1955 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5761   -0.2182    4.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2772   -0.5633    3.8499 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7440   -3.2122    1.7357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2670    1.7800   -2.8958 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2218    3.2528   -1.8785 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2929    3.7201   -4.0780 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3862    2.1320   -3.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3474    3.6357   -2.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2563    1.7316   -2.9848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6789    0.7287   -3.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 25  1  0
 15 14  1  0
  5  3  1  0
  5  6  1  0
  3  4  2  0
 11 13  1  0
  6 30  1  0
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 13 14  1  0
 11 12  1  6
 19 20  1  0
  9 10  1  0
 11  9  1  0
  6  7  2  0
  8  7  1  0
 19 18  1  0
  9  8  1  0
  3  2  1  0
  2  1  1  0
 15 16  1  0
 25 26  1  0
 21 22  1  0
 26 27  1  0
 16 17  2  0
 27 28  1  0
 19 21  1  0
 27 29  2  0
 17 18  1  0
 21 23  1  0
  5 15  1  0
 21 24  1  6
 19 51  1  6
 22 53  1  0
 22 54  1  0
 22 55  1  0
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 15 47  1  1
 14 45  1  0
 14 46  1  0
  8 36  1  0
  8 37  1  0
 13 43  1  0
 13 44  1  0
  9 38  1  6
 17 48  1  0
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 18 50  1  0
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 30 65  1  0
 30 66  1  0
 12 40  1  0
 12 41  1  0
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 10 39  1  0
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  1 31  1  0
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  1 33  1  0
 28 62  1  0
 28 63  1  0
 28 64  1  0
 23 56  1  0
 23 57  1  0
 23 58  1  0
 24 59  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       1.955  -3.068  -2.741  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.297  -1.801  -2.800  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.958  -1.287  -1.583  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.166  -1.842  -0.508  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.269   0.069  -1.761  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.240  -0.039  -1.733  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.950  -0.839  -0.913  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.379  -0.508  -0.551  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.770   0.990  -0.745  0.00  0.00           C+0
HETATM   10  O   UNK     0      -4.328   1.527   0.456  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.608   1.899  -1.273  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.196   3.203  -1.844  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.573   2.265  -0.145  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.096   2.422  -0.592  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.732   1.090  -0.664  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.239   1.406  -0.769  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.153   0.996   0.142  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.962   0.174   1.397  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.942  -1.015   1.471  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.731  -1.929   0.376  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.870  -1.837   2.790  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.502  -2.479   3.033  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.291  -1.014   4.008  0.00  0.00           C+0
HETATM   24  O   UNK     0       4.815  -2.917   2.667  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.645   2.247  -1.981  0.00  0.00           C+0
HETATM   26  O   UNK     0       4.068   2.362  -2.091  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.479   3.079  -3.170  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.975   3.141  -3.206  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.744   3.601  -3.996  0.00  0.00           O+0
HETATM   30  C   UNK     0      -1.945   1.107  -2.404  0.00  0.00           C+0
HETATM   31  H   UNK     0       2.135  -3.404  -3.766  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.920  -2.972  -2.234  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.324  -3.808  -2.240  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.568   0.441  -2.749  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.479  -1.631  -0.336  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.542  -0.793   0.495  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.043  -1.142  -1.151  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.587   1.007  -1.478  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.699   1.371   1.180  0.00  0.00           H+0
HETATM   40  H   UNK     0      -3.894   2.998  -2.664  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.407   3.853  -2.237  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.742   3.764  -1.077  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.887   3.208   0.323  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.602   1.527   0.666  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.048   2.971  -1.539  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.388   3.067   0.155  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.547   0.609   0.303  0.00  0.00           H+0
HETATM   48  H   UNK     0       4.193   1.288  -0.007  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.129   0.843   2.248  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.940  -0.198   1.477  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.970  -0.652   1.348  0.00  0.00           H+0
HETATM   52  H   UNK     0       2.764  -1.975   0.213  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.533  -3.130   3.915  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.207  -3.121   2.196  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.719  -1.732   3.193  0.00  0.00           H+0
HETATM   56  H   UNK     0       4.383  -1.652   4.894  0.00  0.00           H+0
HETATM   57  H   UNK     0       3.576  -0.218   4.235  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.277  -0.563   3.850  0.00  0.00           H+0
HETATM   59  H   UNK     0       4.744  -3.212   1.736  0.00  0.00           H+0
HETATM   60  H   UNK     0       2.267   1.780  -2.896  0.00  0.00           H+0
HETATM   61  H   UNK     0       2.222   3.253  -1.879  0.00  0.00           H+0
HETATM   62  H   UNK     0       6.293   3.720  -4.078  0.00  0.00           H+0
HETATM   63  H   UNK     0       6.386   2.132  -3.289  0.00  0.00           H+0
HETATM   64  H   UNK     0       6.347   3.636  -2.305  0.00  0.00           H+0
HETATM   65  H   UNK     0      -1.256   1.732  -2.985  0.00  0.00           H+0
HETATM   66  H   UNK     0      -2.679   0.729  -3.128  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    3    1                                                       
CONECT    3    5    4    2                                                  
CONECT    4    3                                                            
CONECT    5    3    6   15   34                                             
CONECT    6    5   30    7                                                  
CONECT    7    6    8   35                                                  
CONECT    8    7    9   36   37                                             
CONECT    9   10   11    8   38                                             
CONECT   10    9   39                                                       
CONECT   11   13   30   12    9                                             
CONECT   12   11   40   41   42                                             
CONECT   13   11   14   43   44                                             
CONECT   14   15   13   45   46                                             
CONECT   15   14   16    5   47                                             
CONECT   16   25   15   17                                                  
CONECT   17   16   18   48                                                  
CONECT   18   19   17   49   50                                             
CONECT   19   20   18   21   51                                             
CONECT   20   19   52                                                       
CONECT   21   22   19   23   24                                             
CONECT   22   21   53   54   55                                             
CONECT   23   21   56   57   58                                             
CONECT   24   21   59                                                       
CONECT   25   16   26   60   61                                             
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27   62   63   64                                             
CONECT   29   27                                                            
CONECT   30    6   11   65   66                                             
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    5                                                            
CONECT   35    7                                                            
CONECT   36    8                                                            
CONECT   37    8                                                            
CONECT   38    9                                                            
CONECT   39   10                                                            
CONECT   40   12                                                            
CONECT   41   12                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   13                                                            
CONECT   45   14                                                            
CONECT   46   14                                                            
CONECT   47   15                                                            
CONECT   48   17                                                            
CONECT   49   18                                                            
CONECT   50   18                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
CONECT   53   22                                                            
CONECT   54   22                                                            
CONECT   55   22                                                            
CONECT   56   23                                                            
CONECT   57   23                                                            
CONECT   58   23                                                            
CONECT   59   24                                                            
CONECT   60   25                                                            
CONECT   61   25                                                            
CONECT   62   28                                                            
CONECT   63   28                                                            
CONECT   64   28                                                            
CONECT   65   30                                                            
CONECT   66   30                                                            
MASTER        0    0    0    0    0    0    0    0   66    0  134    0
END

RDKit          3D

66 67  0  0  0  0  0  0  0  0999 V2000
    1.9552   -3.0676   -2.7413 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2974   -1.8013   -2.8004 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.6085    1.8989   -1.2734 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1964    3.2027   -1.8443 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7318    1.0897   -0.6635 C   0  0  2  0  0  0  0  0  0  0  0  0
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    4.2910   -1.0144    4.0075 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.0684    2.3619   -2.0906 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4792    3.0790   -3.1700 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9752    3.1413   -3.2061 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7436    3.6007   -3.9959 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3237   -3.8078   -2.2401 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5675    0.4411   -2.7492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4788   -1.6312   -0.3359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5421   -0.7934    0.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0430   -1.1423   -1.1506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5868    1.0074   -1.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6991    1.3707    1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8937    2.9978   -2.6644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4068    3.8531   -2.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7418    3.7635   -1.0773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8871    3.2077    0.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6017    1.5267    0.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0478    2.9710   -1.5389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3883    3.0674    0.1545 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5466    0.6094    0.3034 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1932    1.2881   -0.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1292    0.8429    2.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9404   -0.1983    1.4770 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9698   -0.6520    1.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7639   -1.9746    0.2126 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5331   -3.1303    3.9150 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2066   -3.1207    2.1955 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7191   -1.7317    3.1933 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5761   -0.2182    4.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2772   -0.5633    3.8499 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7440   -3.2122    1.7357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2670    1.7800   -2.8958 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2218    3.2528   -1.8785 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2929    3.7201   -4.0780 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3862    2.1320   -3.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3474    3.6357   -2.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2563    1.7316   -2.9848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6789    0.7287   -3.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 25  1  0
 15 14  1  0
  5  3  1  0
  5  6  1  0
  3  4  2  0
 11 13  1  0
  6 30  1  0
 11 30  1  0
 13 14  1  0
 11 12  1  6
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  9 10  1  0
 11  9  1  0
  6  7  2  0
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  9  8  1  0
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 15 16  1  0
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 21 22  1  0
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  5 34  1  6
 15 47  1  1
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  8 36  1  0
  8 37  1  0
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  9 38  1  6
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 30 65  1  0
 30 66  1  0
 12 40  1  0
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 12 42  1  0
 10 39  1  0
  7 35  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
 28 62  1  0
 28 63  1  0
 28 64  1  0
 23 56  1  0
 23 57  1  0
 23 58  1  0
 24 59  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₃₆O₇

Average Mass

424.5340 Da

Monoisotopic Mass

424.24610 Da

IUPAC Name

methyl (2R,3S,6S,7R)-3-[(2E,5S)-1-(acetyloxy)-5,6-dihydroxy-6-methylhept-2-en-2-yl]-7-hydroxy-6-methylbicyclo[4.3.1]dec-1(9)-ene-2-carboxylate

Traditional Name

methyl (2R,3S,6S,7R)-3-[(2E,5S)-1-(acetyloxy)-5,6-dihydroxy-6-methylhept-2-en-2-yl]-7-hydroxy-6-methylbicyclo[4.3.1]dec-1(9)-ene-2-carboxylate

CAS Registry Number

Not Available

SMILES

[H]O[C@@]([H])(C([H])([H])C(\[H])=C(\C([H])([H])OC(=O)C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])C(=C([H])C([H])([H])[C@@]2([H])O[H])[C@]1([H])C(=O)OC([H])([H])[H])C(O[H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C23H36O7/c1-14(24)30-13-16(7-8-18(25)22(2,3)28)17-10-11-23(4)12-15(6-9-19(23)26)20(17)21(27)29-5/h6-7,17-20,25-26,28H,8-13H2,1-5H3/b16-7-/t17-,18+,19-,20+,23+/m1/s1

InChI Key

SKUXBRSPQCLBOB-POOUBWEISA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xenia umbellata	JEOL database	El-Gamal, A. A. H., et al, J. Nat. Prod. 69, 338 (2006)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.04	ALOGPS
logP	0.99	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	13.8	ChemAxon
pKa (Strongest Basic)	-0.87	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	113.58 m³·mol⁻¹	ChemAxon
Polarizability	46.57 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

El-Gamal, A. A. H., et al. (2006). El-Gamal, A. A. H., et al, J. Nat. Prod. 69, 338 (2006). J. Nat. Prod..

Showing NP-Card for umbellacin E (NP0031916)

MOL for NP0031916 (umbellacin E)

3D MOL for NP0031916 (umbellacin E)

3D SDF for NP0031916 (umbellacin E)

3D-SDF for NP0031916 (umbellacin E)

PDB for NP0031916 (umbellacin E)

3D PDB for NP0031916 (umbellacin E)

SMILES for NP0031916 (umbellacin E)

INCHI for NP0031916 (umbellacin E)

Structure for NP0031916 (umbellacin E)

3D Structure for NP0031916 (umbellacin E)