Np mrd loader

Record Information
Version2.0
Created at2021-06-19 22:46:03 UTC
Updated at2021-06-30 00:00:35 UTC
NP-MRD IDNP0031783
Secondary Accession NumbersNone
Natural Product Identification
Common Namedaphnilongeranin D
Provided ByJEOL DatabaseJEOL Logo
DescriptionDaphnilongeranin D belongs to the class of organic compounds known as daphniphylline-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum, possessing 22 carbon polycyclic fused ring systems with or without the C8 side chain. The C8 unit consists of 6-oxabicyclo[3.2.1]Octane or 2,8-dioxabicyclo[3.2.1]Octane. daphnilongeranin D is found in Daphniphyllum calycinum, Daphniphyllum longeracemosum, Daphniphyllum oldhami and Daphniphyllum subverticillatum. daphnilongeranin D was first documented in 2006 (Yang, S. -P., et al.). Based on a literature review very few articles have been published on Daphnilongeranin D.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H47NO4
Average Mass485.7090 Da
Monoisotopic Mass485.35051 Da
IUPAC Name(2S)-1-[(1R,4R,5S)-1,4-dimethyl-2,8-dioxabicyclo[3.2.1]octan-4-yl]-2-hydroxy-3-[(1S,2R,3S,7R,10S,13S,14R)-1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,12}]hexadecan-2-yl]propan-1-one
Traditional Name(2S)-1-[(1R,4R,5S)-1,4-dimethyl-2,8-dioxabicyclo[3.2.1]octan-4-yl]-2-hydroxy-3-[(1S,2R,3S,7R,10S,13S,14R)-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,12}]hexadecan-2-yl]propan-1-one
CAS Registry NumberNot Available
SMILES
[H]O[C@]([H])(C(=O)[C@]1(C([H])([H])[H])C([H])([H])O[C@@]2(O[C@@]1([H])C([H])([H])C2([H])[H])C([H])([H])[H])C([H])([H])[C@@]12[C@@]3([H])N4C([H])([H])[C@@]([H])(C([H])([H])C([H])([H])[C@@]44C([H])([H])C([H])([H])C([H])([H])[C@@]14[H])[C@]2(C([H])([H])[H])C([H])([H])C([H])([H])[C@]3([H])C([H])(C([H])([H])[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C30H47NO4/c1-18(2)20-9-12-27(4)19-8-14-29-11-6-7-22(29)30(27,24(20)31(29)16-19)15-21(32)25(33)26(3)17-34-28(5)13-10-23(26)35-28/h18-24,32H,6-17H2,1-5H3/t19-,20-,21+,22-,23+,24+,26-,27+,28-,29-,30+/m1/s1
InChI KeyMZFIJLHWABOTEH-ZTABVLHMSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Daphniphyllum calycinumLOTUS Database
Daphniphyllum longeracemosumJEOL database
    • Yang, S. -P., et al, J. Nat. Prod. 69, 79 (2006)
Daphniphyllum oldhamiiPlant
Daphniphyllum subverticillatumPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as daphniphylline-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum, possessing 22 carbon polycyclic fused ring systems with or without the C8 side chain. The C8 unit consists of 6-oxabicyclo[3.2.1]Octane or 2,8-dioxabicyclo[3.2.1]Octane.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassDaphniphylline-type alkaloids
Sub ClassNot Available
Direct ParentDaphniphylline-type alkaloids
Alternative Parents
Substituents
  • Daphniphylline-type alkaloid
  • Sesquiterpenoid
  • Azaspirodecane
  • Indole or derivatives
  • Indolizidine
  • Ketal
  • Azepane
  • Oxepane
  • Meta-dioxane
  • Acyloin
  • Piperidine
  • N-alkylpyrrolidine
  • Alpha-hydroxy ketone
  • Oxolane
  • Pyrrolidine
  • Tertiary amine
  • Tertiary aliphatic amine
  • Secondary alcohol
  • Ketone
  • Organoheterocyclic compound
  • Acetal
  • Azacycle
  • Oxacycle
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic nitrogen compound
  • Aldehyde
  • Alcohol
  • Organonitrogen compound
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.82ALOGPS
logP4.61ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)13.37ChemAxon
pKa (Strongest Basic)11.52ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area59 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity135.67 m³·mol⁻¹ChemAxon
Polarizability54.57 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101391555
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yang, S. -P., et al. (2006). Yang, S. -P., et al, J. Nat. Prod. 69, 79 (2006) . J. Nat. Prod..