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Record Information
Version2.0
Created at2021-06-19 22:11:55 UTC
Updated at2021-06-29 23:59:18 UTC
NP-MRD IDNP0030986
Secondary Accession NumbersNone
Natural Product Identification
Common Namecyanidin 3,5-di-O-beta-glucopyranoside. Cyanin
Provided ByJEOL DatabaseJEOL Logo
DescriptionCyanidin-3,5-diglucoside belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position. cyanidin 3,5-di-O-beta-glucopyranoside. Cyanin is found in Acacia leucophloea , Aechmea tillandsioides, Allium cepa, Allium schoenoprasum, Amelanchier sanguinea, Ananas comosus , Caesalpinia pulcherrima , Camellia sp., Clitoria ternatea , Cyclamen persicum , Desmodium aparines, Dianthus caryophyllus , Dicentra sp., Dipteronia sinensis, Erythrina spp., Euphorbia tirucalli , Fragaria spp., Fuchsia sp., Geranium sylvaticum, Hibiscus spp., Koenigia coriaria, Lathyrus sativus , Lobostemon spp., Lonicera caerulea, Malus spp. , Metrosideros spp., Millettia zechiana, Morus alba , Ocimum basilicum , Oenothera affinis, Oenothera odorata, Paeonia suffruticosa, Pelargonium dolomiticum, Penstemon palmeri, Penstemon spp., Perilla frutescens, Phaseolus vulgaris, Aronia melanocarpa, Pisum sativum , Prunus spp. , Puya densiflora, Rhaponticum carthamoides , Rheum spp., Rheum tataricum, Rhododendron simsii, Rhododendron spp., Rosa spp., Sambucus canadensis , Sambucus nigra, Saraca indica , Saxifraga sp., Vaccinium spp., Vigna unguiculata and Vitis spp. . cyanidin 3,5-di-O-beta-glucopyranoside. Cyanin was first documented in 2003 (Fossen, T., et al.). Based on a literature review very few articles have been published on cyanidin-3,5-diglucoside.
Structure
Thumb
Synonyms
ValueSource
2-(3,4-Dihydroxyphenyl)-3-(beta-D-glucopyranosyloxy)-7-hydroxychromenylium-5-yl beta-D-glucopyranosideChEBI
Cyanidin 3,5-di-O-glucosideChEBI
Cyanidin 3,5-diglucosideChEBI
Cyanidin 3,5-O-diglucosideChEBI
Cyanidin 3,5-di-O-beta-D-glucosideKegg
2-(3,4-Dihydroxyphenyl)-3-(b-D-glucopyranosyloxy)-7-hydroxychromenylium-5-yl b-D-glucopyranosideGenerator
2-(3,4-Dihydroxyphenyl)-3-(β-D-glucopyranosyloxy)-7-hydroxychromenylium-5-yl β-D-glucopyranosideGenerator
Cyanidin 3,5-di-O-b-D-glucosideGenerator
Cyanidin 3,5-di-O-β-D-glucosideGenerator
Chemical FormulaC27H31O16
Average Mass611.5254 Da
Monoisotopic Mass611.16121 Da
IUPAC Name2-(3,4-dihydroxyphenyl)-7-hydroxy-3,5-bis({[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-1lambda4-chromen-1-ylium
Traditional Name2-(3,4-dihydroxyphenyl)-7-hydroxy-3,5-bis({[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-1lambda4-chromen-1-ylium
CAS Registry NumberNot Available
SMILES
[H]OC1=C([H])C2=[O+]C(=C(O[C@]3([H])O[C@]([H])(C([H])([H])O[H])[C@@]([H])(O[H])[C@]([H])(O[H])[C@@]3([H])O[H])C([H])=C2C(O[C@]2([H])O[C@]([H])(C([H])([H])O[H])[C@@]([H])(O[H])[C@]([H])(O[H])[C@@]2([H])O[H])=C1[H])C1=C([H])C([H])=C(O[H])C(O[H])=C1[H]
InChI Identifier
InChI=1S/C27H30O16/c28-7-17-19(33)21(35)23(37)26(42-17)40-15-5-10(30)4-14-11(15)6-16(25(39-14)9-1-2-12(31)13(32)3-9)41-27-24(38)22(36)20(34)18(8-29)43-27/h1-6,17-24,26-29,33-38H,7-8H2,(H2-,30,31,32)/p+1/t17-,18-,19-,20-,21+,22+,23-,24-,26-,27-/m1/s1
InChI KeyRDFLLVCQYHQOBU-ZOTFFYTFSA-O
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 600 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CF3CO2D + CD3OD ( 5 : 95 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acacia leucophloeaPlant
Aechmea tillandsioidesLOTUS Database
Allium cepaJEOL database
    • Fossen, T., et al, Phytochemistry 64, 1367 (2003)
Allium schoenoprasumLOTUS Database
Amelanchier sanguineaLOTUS Database
Ananas comosusPlant
Caesalpinia pulcherrimaPlant
Camellia sp.Plant
Clitoria ternateaPlant
Cyclamen persicumPlant
Cyclamen persicum cv.Sierra RoseKNApSAcK Database
Desmodium aparinesPlant
Dianthus caryophyllusPlant
Dicentra sp.Plant
Dipteronia sinensisPlant
Erythrina spp.Plant
Euphorbia tirucalliPlant
Fragaria spp.Plant
Fuchsia sp.Plant
Geranium sylvaticumPlant
Hibiscus spp.Plant
Koenigia coriariaLOTUS Database
Lathyrus sativusPlant
Lobostemon spp.Plant
Lonicera caeruleaPlant
Malus spp.Plant
Metrosideros spp.Plant
Millettia zechianaPlant
Morus albaPlant
Ocimum basilicumPlant
Oenothera affinisLOTUS Database
Oenothera odorataLOTUS Database
Paeonia suffruticosaLOTUS Database
Pelargonium dolomiticumPlant
Penstemon palmeriLOTUS Database
Penstemon spp.Plant
Perilla frutescensLOTUS Database
Phaseolus vulgarisLOTUS Database
Photinia melanocarpaLOTUS Database
Pisum sativumPlant
Prunus spp.Plant
Punica granatumKNApSAcK Database
Puya densifloraLOTUS Database
Rhaponticum carthamoidesPlant
Rheum spp.Plant
Rheum tataricumLOTUS Database
Rhododendron simsiiPlant
Rhododendron spp.Plant
Rosa spp.Plant
Sambucus canadensisPlant
Sambucus nigraLOTUS Database
Saraca indicaPlant
Saxifraga sp.Plant
Vaccinium spp.Plant
Vigna unguiculataLOTUS Database
Vitis spp.Plant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentAnthocyanidin-5-O-glycosides
Alternative Parents
Substituents
  • Anthocyanidin-3-o-glycoside
  • Anthocyanidin-5-o-glycoside
  • Flavonoid-3-o-glycoside
  • Hydroxyflavonoid
  • 7-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 3'-hydroxyflavonoid
  • Anthocyanidin
  • Phenolic glycoside
  • Hexose monosaccharide
  • O-glycosyl compound
  • Glycosyl compound
  • 1-benzopyran
  • Benzopyran
  • Catechol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Oxane
  • Monosaccharide
  • Heteroaromatic compound
  • Secondary alcohol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Polyol
  • Primary alcohol
  • Organic oxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic cation
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.25ALOGPS
logP-2.3ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)6.65ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count11ChemAxon
Polar Surface Area272.59 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity148.4 m³·mol⁻¹ChemAxon
Polarizability58.11 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB030758
KNApSAcK IDC00038883
Chemspider ID390301
KEGG Compound IDC08639
BioCyc IDCPD-7138
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID3978
Good Scents IDNot Available
References
General References
  1. Fossen, T., et al. (2003). Fossen, T., et al, Phytochemistry 64, 1367 (2003) . Phytochem..