NP-MRD: Showing NP-Card for 3,9-dihydroeucomnalin (NP0030674)

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Record Information

Version

2.0

Created at

2021-06-19 21:58:00 UTC

Updated at

2021-06-29 23:58:48 UTC

NP-MRD ID

NP0030674

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,9-dihydroeucomnalin

Provided By

JEOL Database JEOL Logo

Description

CHEMBL1080798 belongs to the class of organic compounds known as homoisoflavanones. These are homoisoflavonoids with a structure based on the chromanone system. Chromanone is a bicyclic compound consisting of a 3,4-dihydro-1-benzopyran, which bears a ketone group at the 4-position. 3,9-dihydroeucomnalin is found in Eucomis autumnalis, Ledebouria graminifolia, Scilla scilloides DRUCE and Soymida febrifuga. 3,9-dihydroeucomnalin was first documented in 2003 (Mutanyatta, J., et al.). Based on a literature review very few articles have been published on CHEMBL1080798.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192123583D          

 39 41  0  0  0  0            999 V2000
   -3.9122   -5.0910   -1.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3578   -5.2527   -0.0254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8376   -4.1486    0.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2557   -4.4514    1.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2549   -5.7433    2.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670   -3.4823    2.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391   -2.1663    2.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2319   -1.8258    0.9836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8318   -2.8149    0.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -2.4734   -1.0178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2487   -0.3951    0.5992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8260   -0.0605   -0.4344 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6263    0.5882    1.5684 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1667    1.8910    0.8954 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0793    1.7846    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3351    2.1027    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4891    1.9852   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3928    1.5554   -1.5085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    1.4543   -2.2299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    1.2437   -2.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0034    1.3610   -1.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5186   -0.1312    2.3240 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0418   -1.2568    3.0375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2178   -6.0818   -1.6752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8117   -4.4685   -1.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1681   -4.7137   -2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7106   -6.2592    1.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2264   -3.7573    3.6017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3741   -1.4962   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4334    0.8398    2.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754    2.3068    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9893    2.6427    1.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4273    2.4462    1.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4601    2.2311    0.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221    1.1585   -3.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    0.9133   -3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9595    1.1258   -1.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2916   -0.4795    1.6703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0741    0.5381    3.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 12  2  0  0  0  0
 13 14  1  0  0  0  0
  3  9  2  0  0  0  0
  4  5  1  0  0  0  0
  9  8  1  0  0  0  0
  9 10  1  0  0  0  0
  4  3  1  0  0  0  0
 14 15  1  0  0  0  0
  7  6  1  0  0  0  0
 15 16  2  0  0  0  0
  6  4  2  0  0  0  0
 16 17  1  0  0  0  0
  7 23  1  0  0  0  0
 17 18  2  0  0  0  0
  8 11  1  0  0  0  0
 18 20  1  0  0  0  0
 11 13  1  0  0  0  0
 20 21  2  0  0  0  0
 21 15  1  0  0  0  0
 13 22  1  0  0  0  0
 18 19  1  0  0  0  0
 22 23  1  0  0  0  0
  3  2  1  0  0  0  0
  7  8  2  0  0  0  0
  2  1  1  0  0  0  0
  6 28  1  0  0  0  0
 13 30  1  0  0  0  0
 22 38  1  0  0  0  0
 22 39  1  0  0  0  0
 14 31  1  0  0  0  0
 14 32  1  0  0  0  0
  5 27  1  0  0  0  0
 10 29  1  0  0  0  0
 16 33  1  0  0  0  0
 17 34  1  0  0  0  0
 20 36  1  0  0  0  0
 21 37  1  0  0  0  0
 19 35  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
M  END

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -3.9122   -5.0910   -1.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3578   -5.2527   -0.0254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8376   -4.1486    0.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2557   -4.4514    1.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2549   -5.7433    2.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670   -3.4823    2.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391   -2.1663    2.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2319   -1.8258    0.9836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8318   -2.8149    0.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -2.4734   -1.0178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2487   -0.3951    0.5992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8260   -0.0605   -0.4344 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6263    0.5882    1.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1667    1.8910    0.8954 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0793    1.7846    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3351    2.1027    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4891    1.9852   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3928    1.5554   -1.5085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    1.4543   -2.2299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    1.2437   -2.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0034    1.3610   -1.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5186   -0.1312    2.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0418   -1.2568    3.0375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2178   -6.0818   -1.6752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8117   -4.4685   -1.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1681   -4.7137   -2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7106   -6.2592    1.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2264   -3.7573    3.6017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3741   -1.4962   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4334    0.8398    2.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754    2.3068    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9893    2.6427    1.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4273    2.4462    1.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4601    2.2311    0.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221    1.1585   -3.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    0.9133   -3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9595    1.1258   -1.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2916   -0.4795    1.6703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0741    0.5381    3.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 12  2  0
 13 14  1  0
  3  9  2  0
  4  5  1  0
  9  8  1  0
  9 10  1  0
  4  3  1  0
 14 15  1  0
  7  6  1  0
 15 16  2  0
  6  4  2  0
 16 17  1  0
  7 23  1  0
 17 18  2  0
  8 11  1  0
 18 20  1  0
 11 13  1  0
 20 21  2  0
 21 15  1  0
 13 22  1  0
 18 19  1  0
 22 23  1  0
  3  2  1  0
  7  8  2  0
  2  1  1  0
  6 28  1  0
 13 30  1  0
 22 38  1  0
 22 39  1  0
 14 31  1  0
 14 32  1  0
  5 27  1  0
 10 29  1  0
 16 33  1  0
 17 34  1  0
 20 36  1  0
 21 37  1  0
 19 35  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
M  END


  Mrv1652306192123583D          

 39 41  0  0  0  0            999 V2000
   -3.9122   -5.0910   -1.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3578   -5.2527   -0.0254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8376   -4.1486    0.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2557   -4.4514    1.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2549   -5.7433    2.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670   -3.4823    2.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391   -2.1663    2.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2319   -1.8258    0.9836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8318   -2.8149    0.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -2.4734   -1.0178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2487   -0.3951    0.5992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8260   -0.0605   -0.4344 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6263    0.5882    1.5684 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1667    1.8910    0.8954 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0793    1.7846    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3351    2.1027    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4891    1.9852   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3928    1.5554   -1.5085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    1.4543   -2.2299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    1.2437   -2.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0034    1.3610   -1.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5186   -0.1312    2.3240 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0418   -1.2568    3.0375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2178   -6.0818   -1.6752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8117   -4.4685   -1.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1681   -4.7137   -2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7106   -6.2592    1.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2264   -3.7573    3.6017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3741   -1.4962   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4334    0.8398    2.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754    2.3068    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9893    2.6427    1.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4273    2.4462    1.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4601    2.2311    0.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221    1.1585   -3.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    0.9133   -3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9595    1.1258   -1.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2916   -0.4795    1.6703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0741    0.5381    3.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 12  2  0  0  0  0
 13 14  1  0  0  0  0
  3  9  2  0  0  0  0
  4  5  1  0  0  0  0
  9  8  1  0  0  0  0
  9 10  1  0  0  0  0
  4  3  1  0  0  0  0
 14 15  1  0  0  0  0
  7  6  1  0  0  0  0
 15 16  2  0  0  0  0
  6  4  2  0  0  0  0
 16 17  1  0  0  0  0
  7 23  1  0  0  0  0
 17 18  2  0  0  0  0
  8 11  1  0  0  0  0
 18 20  1  0  0  0  0
 11 13  1  0  0  0  0
 20 21  2  0  0  0  0
 21 15  1  0  0  0  0
 13 22  1  0  0  0  0
 18 19  1  0  0  0  0
 22 23  1  0  0  0  0
  3  2  1  0  0  0  0
  7  8  2  0  0  0  0
  2  1  1  0  0  0  0
  6 28  1  0  0  0  0
 13 30  1  0  0  0  0
 22 38  1  0  0  0  0
 22 39  1  0  0  0  0
 14 31  1  0  0  0  0
 14 32  1  0  0  0  0
  5 27  1  0  0  0  0
 10 29  1  0  0  0  0
 16 33  1  0  0  0  0
 17 34  1  0  0  0  0
 20 36  1  0  0  0  0
 21 37  1  0  0  0  0
 19 35  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0030674

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])[C@@]1([H])C(=O)C2=C(OC1([H])[H])C([H])=C(O[H])C(OC([H])([H])[H])=C2O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O6/c1-22-17-12(19)7-13-14(16(17)21)15(20)10(8-23-13)6-9-2-4-11(18)5-3-9/h2-5,7,10,18-19,21H,6,8H2,1H3/t10-/m1/s1

> <INCHI_KEY>
CGCVUMRAPMFWDT-SNVBAGLBSA-N

> <FORMULA>
C17H16O6

> <MOLECULAR_WEIGHT>
316.309

> <EXACT_MASS>
316.094688235

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
31.561444077006996

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-6-methoxy-3,4-dihydro-2H-1-benzopyran-4-one

> <ALOGPS_LOGP>
2.71

> <JCHEM_LOGP>
3.014555513333333

> <ALOGPS_LOGS>
-3.59

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.418068404811386

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.35686336615593

> <JCHEM_PKA_STRONGEST_BASIC>
-4.205253298938261

> <JCHEM_POLAR_SURFACE_AREA>
96.22

> <JCHEM_REFRACTIVITY>
82.7407

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.13e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-6-methoxy-2,3-dihydro-1-benzopyran-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -3.9122   -5.0910   -1.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3578   -5.2527   -0.0254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8376   -4.1486    0.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2557   -4.4514    1.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2549   -5.7433    2.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670   -3.4823    2.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391   -2.1663    2.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2319   -1.8258    0.9836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8318   -2.8149    0.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -2.4734   -1.0178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2487   -0.3951    0.5992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8260   -0.0605   -0.4344 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6263    0.5882    1.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1667    1.8910    0.8954 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0793    1.7846    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3351    2.1027    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4891    1.9852   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3928    1.5554   -1.5085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    1.4543   -2.2299 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0034    1.3610   -1.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5186   -0.1312    2.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0418   -1.2568    3.0375 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8117   -4.4685   -1.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1681   -4.7137   -2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7106   -6.2592    1.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2264   -3.7573    3.6017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3741   -1.4962   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4334    0.8398    2.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754    2.3068    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9893    2.6427    1.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4273    2.4462    1.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4601    2.2311    0.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221    1.1585   -3.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    0.9133   -3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9595    1.1258   -1.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2916   -0.4795    1.6703 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 24  1  0
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  1 26  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.912  -5.091  -1.324  0.00  0.00           C+0
HETATM    2  O   UNK     0      -3.358  -5.253  -0.025  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.838  -4.149   0.603  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.256  -4.451   1.845  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.255  -5.743   2.304  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.667  -3.482   2.648  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.639  -2.166   2.205  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.232  -1.826   0.984  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.832  -2.815   0.175  0.00  0.00           C+0
HETATM   10  O   UNK     0      -3.419  -2.473  -1.018  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.249  -0.395   0.599  0.00  0.00           C+0
HETATM   12  O   UNK     0      -2.826  -0.061  -0.434  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.626   0.588   1.568  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.167   1.891   0.895  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.079   1.785   0.046  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.335   2.103   0.585  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.489   1.985  -0.192  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.393   1.555  -1.508  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.545   1.454  -2.230  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.158   1.244  -2.066  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.003   1.361  -1.289  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.519  -0.131   2.324  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.042  -1.257   3.038  0.00  0.00           O+0
HETATM   24  H   UNK     0      -4.218  -6.082  -1.675  0.00  0.00           H+0
HETATM   25  H   UNK     0      -4.812  -4.468  -1.295  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.168  -4.714  -2.033  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.711  -6.259   1.610  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.226  -3.757   3.602  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.374  -1.496  -1.125  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.433   0.840   2.271  0.00  0.00           H+0
HETATM   31  H   UNK     0      -1.975   2.307   0.280  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.989   2.643   1.677  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.427   2.446   1.613  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.460   2.231   0.229  0.00  0.00           H+0
HETATM   35  H   UNK     0       3.322   1.159  -3.128  0.00  0.00           H+0
HETATM   36  H   UNK     0       1.072   0.913  -3.096  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.960   1.126  -1.739  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.292  -0.480   1.670  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.074   0.538   3.069  0.00  0.00           H+0
CONECT    1    2   24   25   26                                             
CONECT    2    3    1                                                       
CONECT    3    9    4    2                                                  
CONECT    4    5    3    6                                                  
CONECT    5    4   27                                                       
CONECT    6    7    4   28                                                  
CONECT    7    6   23    8                                                  
CONECT    8    9   11    7                                                  
CONECT    9    3    8   10                                                  
CONECT   10    9   29                                                       
CONECT   11   12    8   13                                                  
CONECT   12   11                                                            
CONECT   13   14   11   22   30                                             
CONECT   14   13   15   31   32                                             
CONECT   15   14   16   21                                                  
CONECT   16   15   17   33                                                  
CONECT   17   16   18   34                                                  
CONECT   18   17   20   19                                                  
CONECT   19   18   35                                                       
CONECT   20   18   21   36                                                  
CONECT   21   20   15   37                                                  
CONECT   22   13   23   38   39                                             
CONECT   23    7   22                                                       
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    5                                                            
CONECT   28    6                                                            
CONECT   29   10                                                            
CONECT   30   13                                                            
CONECT   31   14                                                            
CONECT   32   14                                                            
CONECT   33   16                                                            
CONECT   34   17                                                            
CONECT   35   19                                                            
CONECT   36   20                                                            
CONECT   37   21                                                            
CONECT   38   22                                                            
CONECT   39   22                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   82    0
END

RDKit          3D

39 41  0  0  0  0  0  0  0  0999 V2000
   -3.9122   -5.0910   -1.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3578   -5.2527   -0.0254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8376   -4.1486    0.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2557   -4.4514    1.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2549   -5.7433    2.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6670   -3.4823    2.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391   -2.1663    2.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2319   -1.8258    0.9836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8318   -2.8149    0.1750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -2.4734   -1.0178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2487   -0.3951    0.5992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8260   -0.0605   -0.4344 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6263    0.5882    1.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1667    1.8910    0.8954 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0793    1.7846    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3351    2.1027    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4891    1.9852   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3928    1.5554   -1.5085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449    1.4543   -2.2299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    1.2437   -2.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0034    1.3610   -1.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5186   -0.1312    2.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0418   -1.2568    3.0375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2178   -6.0818   -1.6752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8117   -4.4685   -1.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1681   -4.7137   -2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7106   -6.2592    1.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2264   -3.7573    3.6017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3741   -1.4962   -1.1254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4334    0.8398    2.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754    2.3068    0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9893    2.6427    1.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4273    2.4462    1.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4601    2.2311    0.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221    1.1585   -3.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    0.9133   -3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9595    1.1258   -1.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2916   -0.4795    1.6703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0741    0.5381    3.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 12  2  0
 13 14  1  0
  3  9  2  0
  4  5  1  0
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  9 10  1  0
  4  3  1  0
 14 15  1  0
  7  6  1  0
 15 16  2  0
  6  4  2  0
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  6 28  1  0
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 14 31  1  0
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  5 27  1  0
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 20 36  1  0
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 19 35  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₆O₆

Average Mass

316.3090 Da

Monoisotopic Mass

316.09469 Da

IUPAC Name

(3R)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-6-methoxy-3,4-dihydro-2H-1-benzopyran-4-one

Traditional Name

(3R)-5,7-dihydroxy-3-[(4-hydroxyphenyl)methyl]-6-methoxy-2,3-dihydro-1-benzopyran-4-one

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])[C@@]1([H])C(=O)C2=C(OC1([H])[H])C([H])=C(O[H])C(OC([H])([H])[H])=C2O[H]

InChI Identifier

InChI=1S/C17H16O6/c1-22-17-12(19)7-13-14(16(17)21)15(20)10(8-23-13)6-9-2-4-11(18)5-3-9/h2-5,7,10,18-19,21H,6,8H2,1H3/t10-/m1/s1

InChI Key

CGCVUMRAPMFWDT-SNVBAGLBSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, acetone-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eucomis autumnalis	LOTUS Database	35616633
Ledebouria graminifolia	JEOL database	Mutanyatta, J., et al., Phytochemistry 62, 797 (2003)
Scilla scilloides DRUCE	Plant	KNApSAcK
Soymida febrifuga	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as homoisoflavanones. These are homoisoflavonoids with a structure based on the chromanone system. Chromanone is a bicyclic compound consisting of a 3,4-dihydro-1-benzopyran, which bears a ketone group at the 4-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Homoisoflavonoids

Sub Class

Homoisoflavans

Direct Parent

Homoisoflavanones

Alternative Parents

Substituents

Homoisoflavanone
Chromone
Chromane
Benzopyran
1-benzopyran
Anisole
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Benzenoid
Vinylogous acid
Ketone
Ether
Organoheterocyclic compound
Oxacycle
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.71	ALOGPS
logP	3.01	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	8.36	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	82.74 m³·mol⁻¹	ChemAxon
Polarizability	31.56 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

553835

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

638288

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mutanyatta, J., et al. (2003). Mutanyatta, J., et al., Phytochemistry 62, 797 (2003). Phytochem..

Showing NP-Card for 3,9-dihydroeucomnalin (NP0030674)

MOL for NP0030674 (3,9-dihydroeucomnalin)

3D MOL for NP0030674 (3,9-dihydroeucomnalin)

3D SDF for NP0030674 (3,9-dihydroeucomnalin)

3D-SDF for NP0030674 (3,9-dihydroeucomnalin)

PDB for NP0030674 (3,9-dihydroeucomnalin)

3D PDB for NP0030674 (3,9-dihydroeucomnalin)

SMILES for NP0030674 (3,9-dihydroeucomnalin)

INCHI for NP0030674 (3,9-dihydroeucomnalin)

Structure for NP0030674 (3,9-dihydroeucomnalin)

3D Structure for NP0030674 (3,9-dihydroeucomnalin)