NP-MRD: Showing NP-Card for 12-methoxyherbertene-1,2-diol (NP0029367)

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Record Information

Version

2.0

Created at

2021-06-19 21:00:52 UTC

Updated at

2021-06-29 23:56:40 UTC

NP-MRD ID

NP0029367

Secondary Accession Numbers

None

Natural Product Identification

Common Name

12-methoxyherbertene-1,2-diol

Provided By

JEOL Database JEOL Logo

Description

12-methoxyherbertene-1,2-diol is found in Herbertus dicranus and Herbertus sakuraii. 12-methoxyherbertene-1,2-diol was first documented in 2000 (Irita, H., et al.). Based on a literature review very few articles have been published on 12-methoxyherbertene-1,2-diol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI

  Mrv1652306192123003D          

 43 44  0  0  0  0            999 V2000
   -5.8205   -2.8611   -3.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7371   -1.4789   -3.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4486   -0.6649   -2.8467 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9755   -0.6729   -2.5109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0227   -0.5089   -3.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823   -0.4879   -3.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7053   -0.3185   -4.1222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2718   -0.6311   -1.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0756   -0.5581   -1.6128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1879   -0.8137   -0.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7519   -0.9828    0.6793 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9522    0.2818    1.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9502   -1.0881    1.6788 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3934   -1.6916    2.9630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1249   -2.4361    2.5643 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0064   -2.3420    1.0193 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4831   -2.4299    0.6501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7055   -3.5739    0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -0.8064   -1.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6253   -3.0363   -2.9380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8706   -3.2293   -3.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4717   -0.4254   -2.4974 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0168    0.4079    0.5564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6853    0.2709    2.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4361   -0.1232    1.8643 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1479   -3.4731    2.9183 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9456   -3.3017    1.1299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0477   -1.5533    0.9796 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7605   -3.6482    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6474   -3.5529   -0.7015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3316   -0.8989   -0.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  2  0  0  0  0
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  1 22  1  0  0  0  0
M  END

     RDKit          3D

 43 44  0  0  0  0  0  0  0  0999 V2000
   -5.8205   -2.8611   -3.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7371   -1.4789   -3.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4486   -0.6649   -2.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9755   -0.6729   -2.5109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0227   -0.5089   -3.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823   -0.4879   -3.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7053   -0.3185   -4.1222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2718   -0.6311   -1.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0756   -0.5581   -1.6128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1879   -0.8137   -0.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7519   -0.9828    0.6793 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9522    0.2818    1.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9502   -1.0881    1.6788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3934   -1.6916    2.9630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1249   -2.4361    2.5643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0064   -2.3420    1.0193 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4831   -2.4299    0.6501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7055   -3.5739    0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -0.8064   -1.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6253   -3.0363   -2.9380 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.0486   -3.4148   -4.5733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0669   -0.9759   -1.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.3447   -0.3973   -4.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4361   -0.1232    1.8643 H   0  0  0  0  0  0  0  0  0  0  0  0
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  5  6  2  0
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 19  4  2  0
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M  END

  Mrv1652306192123003D          

 43 44  0  0  0  0            999 V2000
   -5.8205   -2.8611   -3.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7371   -1.4789   -3.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4486   -0.6649   -2.8467 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9755   -0.6729   -2.5109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0227   -0.5089   -3.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823   -0.4879   -3.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7053   -0.3185   -4.1222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2718   -0.6311   -1.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0756   -0.5581   -1.6128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1879   -0.8137   -0.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9502   -1.0881    1.6788 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3934   -1.6916    2.9630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1249   -2.4361    2.5643 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -1.7055   -3.5739    0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -0.8064   -1.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6253   -3.0363   -2.9380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8706   -3.2293   -3.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.7287   -1.7714    1.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3316   -0.8989   -0.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  2  0  0  0  0
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 16 15  1  0  0  0  0
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  4  5  1  0  0  0  0
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  3 23  1  0  0  0  0
  3 24  1  0  0  0  0
  7 26  1  0  0  0  0
  1 20  1  0  0  0  0
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  1 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0029367

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C(=C([H])C(=C1O[H])[C@@]1(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C1(C([H])([H])[H])C([H])([H])[H])C([H])([H])OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C16H24O3/c1-15(2)6-5-7-16(15,3)12-8-11(10-19-4)9-13(17)14(12)18/h8-9,17-18H,5-7,10H2,1-4H3/t16-/m1/s1

> <INCHI_KEY>
WBWSSBOUYGDHAI-MRXNPFEDSA-N

> <FORMULA>
C16H24O3

> <MOLECULAR_WEIGHT>
264.365

> <EXACT_MASS>
264.172544633

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
29.960895916706225

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-(methoxymethyl)-3-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

> <ALOGPS_LOGP>
4.37

> <JCHEM_LOGP>
3.799425823333334

> <ALOGPS_LOGS>
-3.22

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.07324278163884

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.449329297842727

> <JCHEM_PKA_STRONGEST_BASIC>
-4.132338996627516

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
76.6763

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.60e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-(methoxymethyl)-3-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 44  0  0  0  0  0  0  0  0999 V2000
   -5.8205   -2.8611   -3.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7371   -1.4789   -3.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4486   -0.6649   -2.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9755   -0.6729   -2.5109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0227   -0.5089   -3.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823   -0.4879   -3.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7053   -0.3185   -4.1222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2718   -0.6311   -1.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0756   -0.5581   -1.6128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1879   -0.8137   -0.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7519   -0.9828    0.6793 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9522    0.2818    1.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9502   -1.0881    1.6788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3934   -1.6916    2.9630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1249   -2.4361    2.5643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0064   -2.3420    1.0193 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4831   -2.4299    0.6501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7055   -3.5739    0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -0.8064   -1.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6253   -3.0363   -2.9380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8706   -3.2293   -3.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0486   -3.4148   -4.5733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0669   -0.9759   -1.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7353    0.3630   -3.0960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3447   -0.3973   -4.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1413   -0.2487   -4.9894 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4717   -0.4254   -2.4974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5460    1.1883    0.9339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0168    0.4079    0.5564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6853    0.2709    2.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4361   -0.1232    1.8643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7287   -1.7714    1.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1614   -0.9094    3.6945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1233   -2.3621    3.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2666   -1.9594    3.0548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1479   -3.4731    2.9183 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6315   -2.5600   -0.4247 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9456   -3.3017    1.1299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0477   -1.5533    0.9796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2237   -4.5027    0.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7605   -3.6482    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6474   -3.5529   -0.7015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3316   -0.8989   -0.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  2  0
 10 19  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 11  1  0
 10 11  1  0
 19  4  2  0
 16 17  1  1
  4  5  1  0
 16 18  1  0
  8  9  1  0
 11 12  1  1
 11 16  1  0
  4  3  1  0
  6  8  1  0
  6  7  1  0
  3  2  1  0
  8 10  2  0
  2  1  1  0
  5 25  1  0
 19 43  1  0
  9 27  1  0
 15 35  1  0
 15 36  1  0
 14 33  1  0
 14 34  1  0
 13 31  1  0
 13 32  1  0
 17 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
  3 23  1  0
  3 24  1  0
  7 26  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -5.821  -2.861  -3.658  0.00  0.00           C+0
HETATM    2  O   UNK     0      -5.737  -1.479  -3.985  0.00  0.00           O+0
HETATM    3  C   UNK     0      -5.449  -0.665  -2.847  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.975  -0.673  -2.511  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.023  -0.509  -3.518  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.682  -0.488  -3.175  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.705  -0.319  -4.122  0.00  0.00           O+0
HETATM    8  C   UNK     0      -1.272  -0.631  -1.843  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.076  -0.558  -1.613  0.00  0.00           O+0
HETATM   10  C   UNK     0      -2.188  -0.814  -0.795  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.752  -0.983   0.679  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.952   0.282   1.106  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.950  -1.088   1.679  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.393  -1.692   2.963  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.125  -2.436   2.564  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.006  -2.342   1.019  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.483  -2.430   0.650  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.706  -3.574   0.392  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.551  -0.806  -1.171  0.00  0.00           C+0
HETATM   20  H   UNK     0      -6.625  -3.036  -2.938  0.00  0.00           H+0
HETATM   21  H   UNK     0      -4.871  -3.229  -3.260  0.00  0.00           H+0
HETATM   22  H   UNK     0      -6.049  -3.415  -4.573  0.00  0.00           H+0
HETATM   23  H   UNK     0      -6.067  -0.976  -1.996  0.00  0.00           H+0
HETATM   24  H   UNK     0      -5.735   0.363  -3.096  0.00  0.00           H+0
HETATM   25  H   UNK     0      -3.345  -0.397  -4.550  0.00  0.00           H+0
HETATM   26  H   UNK     0      -1.141  -0.249  -4.989  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.472  -0.425  -2.497  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.546   1.188   0.934  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.017   0.408   0.556  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.685   0.271   2.168  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.436  -0.123   1.864  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.729  -1.771   1.323  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.161  -0.909   3.695  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.123  -2.362   3.429  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.267  -1.959   3.055  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.148  -3.473   2.918  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.632  -2.560  -0.425  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.946  -3.302   1.130  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.048  -1.553   0.980  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.224  -4.503   0.721  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.761  -3.648   0.671  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.647  -3.553  -0.702  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.332  -0.899  -0.421  0.00  0.00           H+0
CONECT    1    2   20   21   22                                             
CONECT    2    3    1                                                       
CONECT    3    4    2   23   24                                             
CONECT    4   19    5    3                                                  
CONECT    5    6    4   25                                                  
CONECT    6    5    8    7                                                  
CONECT    7    6   26                                                       
CONECT    8    9    6   10                                                  
CONECT    9    8   27                                                       
CONECT   10   19   11    8                                                  
CONECT   11   13   10   12   16                                             
CONECT   12   11   28   29   30                                             
CONECT   13   14   11   31   32                                             
CONECT   14   15   13   33   34                                             
CONECT   15   16   14   35   36                                             
CONECT   16   15   17   18   11                                             
CONECT   17   16   37   38   39                                             
CONECT   18   16   40   41   42                                             
CONECT   19   10    4   43                                                  
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    3                                                            
CONECT   24    3                                                            
CONECT   25    5                                                            
CONECT   26    7                                                            
CONECT   27    9                                                            
CONECT   28   12                                                            
CONECT   29   12                                                            
CONECT   30   12                                                            
CONECT   31   13                                                            
CONECT   32   13                                                            
CONECT   33   14                                                            
CONECT   34   14                                                            
CONECT   35   15                                                            
CONECT   36   15                                                            
CONECT   37   17                                                            
CONECT   38   17                                                            
CONECT   39   17                                                            
CONECT   40   18                                                            
CONECT   41   18                                                            
CONECT   42   18                                                            
CONECT   43   19                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   88    0
END

RDKit          3D

43 44  0  0  0  0  0  0  0  0999 V2000
   -5.8205   -2.8611   -3.6584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7371   -1.4789   -3.9854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4486   -0.6649   -2.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9755   -0.6729   -2.5109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0227   -0.5089   -3.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823   -0.4879   -3.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7053   -0.3185   -4.1222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2718   -0.6311   -1.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0756   -0.5581   -1.6128 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1879   -0.8137   -0.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7519   -0.9828    0.6793 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9522    0.2818    1.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9502   -1.0881    1.6788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3934   -1.6916    2.9630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1249   -2.4361    2.5643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0064   -2.3420    1.0193 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4831   -2.4299    0.6501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7055   -3.5739    0.3920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5511   -0.8064   -1.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6253   -3.0363   -2.9380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8706   -3.2293   -3.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0486   -3.4148   -4.5733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0669   -0.9759   -1.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7353    0.3630   -3.0960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3447   -0.3973   -4.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1413   -0.2487   -4.9894 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4717   -0.4254   -2.4974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5460    1.1883    0.9339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0168    0.4079    0.5564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6853    0.2709    2.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4361   -0.1232    1.8643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7287   -1.7714    1.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1614   -0.9094    3.6945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1233   -2.3621    3.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2666   -1.9594    3.0548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1479   -3.4731    2.9183 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6315   -2.5600   -0.4247 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9456   -3.3017    1.1299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0477   -1.5533    0.9796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2237   -4.5027    0.7207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7605   -3.6482    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6474   -3.5529   -0.7015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3316   -0.8989   -0.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  6  2  0
 10 19  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 11  1  0
 10 11  1  0
 19  4  2  0
 16 17  1  1
  4  5  1  0
 16 18  1  0
  8  9  1  0
 11 12  1  1
 11 16  1  0
  4  3  1  0
  6  8  1  0
  6  7  1  0
  3  2  1  0
  8 10  2  0
  2  1  1  0
  5 25  1  0
 19 43  1  0
  9 27  1  0
 15 35  1  0
 15 36  1  0
 14 33  1  0
 14 34  1  0
 13 31  1  0
 13 32  1  0
 17 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
  3 23  1  0
  3 24  1  0
  7 26  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₄O₃

Average Mass

264.3650 Da

Monoisotopic Mass

264.17254 Da

IUPAC Name

5-(methoxymethyl)-3-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

Traditional Name

5-(methoxymethyl)-3-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

CAS Registry Number

Not Available

SMILES

[H]OC1=C([H])C(=C([H])C(=C1O[H])[C@@]1(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C1(C([H])([H])[H])C([H])([H])[H])C([H])([H])OC([H])([H])[H]

InChI Identifier

InChI=1S/C16H24O3/c1-15(2)6-5-7-16(15,3)12-8-11(10-19-4)9-13(17)14(12)18/h8-9,17-18H,5-7,10H2,1-4H3/t16-/m1/s1

InChI Key

WBWSSBOUYGDHAI-MRXNPFEDSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Herbertus dicranus	LOTUS Database	35616633
Herbertus sakuraii	JEOL database	Irita, H., et al, Phytochemistry 55, 247 (2000)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.37	ALOGPS
logP	3.8	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	9.45	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	76.68 m³·mol⁻¹	ChemAxon
Polarizability	29.96 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

74094098

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Irita, H., et al. (2000). Irita, H., et al, Phytochemistry 55, 247 (2000). Phytochem..

Showing NP-Card for 12-methoxyherbertene-1,2-diol (NP0029367)

MOL for NP0029367 (12-methoxyherbertene-1,2-diol)

3D MOL for NP0029367 (12-methoxyherbertene-1,2-diol)

3D SDF for NP0029367 (12-methoxyherbertene-1,2-diol)

3D-SDF for NP0029367 (12-methoxyherbertene-1,2-diol)

PDB for NP0029367 (12-methoxyherbertene-1,2-diol)

3D PDB for NP0029367 (12-methoxyherbertene-1,2-diol)

SMILES for NP0029367 (12-methoxyherbertene-1,2-diol)

INCHI for NP0029367 (12-methoxyherbertene-1,2-diol)

Structure for NP0029367 (12-methoxyherbertene-1,2-diol)

3D Structure for NP0029367 (12-methoxyherbertene-1,2-diol)