Np mrd loader

Record Information
Version2.0
Created at2021-06-19 20:17:49 UTC
Updated at2021-08-20 00:00:12 UTC
NP-MRD IDNP0028397
Secondary Accession NumbersNone
Natural Product Identification
Common NamePrunasin
Provided ByJEOL DatabaseJEOL Logo
DescriptionPrunasin, also known as (R)-prunasin or prulaurasin, belongs to the class of organic compounds known as cyanogenic glycosides. These are glycosides in which the aglycone moiety contains a cyanide group. Prunasin exists in all living organisms, ranging from bacteria to humans. Prunasin is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Prunasin is found in Acacia dealbata, Acacia olgana, Adenocaulon himalaicum, Aruncus dioicus, Camellia sinensis, Carica papaya, Centaurea aspera, Chaenorhinum minus, Gerbera jamesonii, Olinia ventosa, Passiflora edulis, Perilla frutescens, Phyllagathis rotundifolia, Polypodium californicum, Prunus cornuta, Prunus myrtifolia, Prunus salicina, Prunus serrulata, Prunus ssiori, Prunus zippeliana, Psydrax livida, Salix interior, Sanguisorba alpina, Vasconcellea quercifolia, Vauquelinia corymbosa and Vicia sativa. Prunasin was first documented in 2020 (PMID: 33332219). Based on a literature review a small amount of articles have been published on Prunasin (PMID: 34020492) (PMID: 33670310) (PMID: 33328455) (PMID: 32618500).
Structure
Thumb
Synonyms
ValueSource
(R)-(beta-D-Glucopyranosyloxy)phenylacetonitrileChEBI
(R)-alpha-(beta-D-Glucopyranosyloxy)benzene-acetonitrileChEBI
(R)-Mandelonitrile beta-D-glucopyranosideChEBI
(R)-Mandelonitrile beta-D-glucosideChEBI
D-PrunasinChEBI
(R)-PrunasinKegg
(R)-(b-D-Glucopyranosyloxy)phenylacetonitrileGenerator
(R)-(Β-D-glucopyranosyloxy)phenylacetonitrileGenerator
(R)-a-(b-D-Glucopyranosyloxy)benzene-acetonitrileGenerator
(R)-Α-(β-D-glucopyranosyloxy)benzene-acetonitrileGenerator
(R)-Mandelonitrile b-D-glucopyranosideGenerator
(R)-Mandelonitrile β-D-glucopyranosideGenerator
(R)-Mandelonitrile b-D-glucosideGenerator
(R)-Mandelonitrile β-D-glucosideGenerator
Mandelonitrile-beta-glucosideHMDB
PrulaurasinHMDB
Prunasin, (R)-isomerHMDB
PrunasineHMDB
(-)-(2R)-PrunasinHMDB
(-)-PrunasinHMDB
(2R)-(beta-D-Glucopyranosyloxy)(phenyl)acetonitrileHMDB
(2R)-PrunasinHMDB
PrunasinChEBI
Chemical FormulaC14H17NO6
Average Mass295.2879 Da
Monoisotopic Mass295.10559 Da
IUPAC Name(2R)-2-phenyl-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}acetonitrile
Traditional Name(R)-prunasin
CAS Registry NumberNot Available
SMILES
[H]OC([H])([H])[C@@]1([H])O[C@@]([H])(O[C@@]([H])(C#N)C2=C([H])C([H])=C([H])C([H])=C2[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]1([H])O[H]
InChI Identifier
InChI=1S/C14H17NO6/c15-6-9(8-4-2-1-3-5-8)20-14-13(19)12(18)11(17)10(7-16)21-14/h1-5,9-14,16-19H,7H2/t9-,10+,11+,12-,13+,14+/m0/s1
InChI KeyZKSZEJFBGODIJW-GMDXDWKASA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acacia dealbataLOTUS Database
Acacia deaneiKNApSAcK Database
Acacia olganaLOTUS Database
Adenocaulon himalaicumLOTUS Database
Amelanchier alnifoliaKNApSAcK Database
Aruncus dioicusLOTUS Database
Camellia sinensisLOTUS Database
Carica papayaLOTUS Database
Carica papaya L.FooDB
Centaurea asperaLOTUS Database
Chaenomeles japonicaKNApSAcK Database
Chaenorhinum minusLOTUS Database
Chaptalia nutansKNApSAcK Database
Clerodendrum grayiKNApSAcK Database
Cystopteris spp.KNApSAcK Database
Dalbergia miscolobiumKNApSAcK Database
Dalbergia spinosaKNApSAcK Database
Derris hainesianaKNApSAcK Database
Elsholtzia rugulosa Hemsl.KNApSAcK Database
Eucalyptus burdettianaKNApSAcK Database
Eucalyptus caleyiKNApSAcK Database
Eucalyptus cylindrifloraKNApSAcK Database
Eucalyptus leptophlebaKNApSAcK Database
Eucalyptus leucoxylonKNApSAcK Database
Eucalyptus megacornutaKNApSAcK Database
Eucalyptus orgadophilaKNApSAcK Database
Eucalyptus ovataKNApSAcK Database
Eucalyptus patellarisKNApSAcK Database
Eucalyptus steedmaniiKNApSAcK Database
Eucalyptus yarraensisKNApSAcK Database
Gerbera jamesoniiLOTUS Database
Gerbera jamesonii var.hybrida.KNApSAcK Database
Glycyrrhiza glabraKNApSAcK Database
Glycyrrhiza pallidifloraKNApSAcK Database
Holocalyx balansaeKNApSAcK Database
Lotononis alpinaKNApSAcK Database
Olinia ventosaLOTUS Database
Passiflora edulisJEOL database
    • Seigler, D. S., et al, Phytochemistry 60, 873 (2002)
Passiflora edulis SimsKNApSAcK Database
Passiflora spp.KNApSAcK Database
Perilla frutescensLOTUS Database
Perilla frutescens var.acuta.KNApSAcK Database
Phyllagathis rotundifoliaLOTUS Database
Polypodium californicumLOTUS Database
Prunus armeniacaKNApSAcK Database
Prunus aviumKNApSAcK Database
Prunus cerasusFooDB
Prunus cornutaLOTUS Database
Prunus domesticaKNApSAcK Database
Prunus dulcisKNApSAcK Database
Prunus laurocerasusKNApSAcK Database
Prunus myrtifoliaLOTUS Database
Prunus padusKNApSAcK Database
Prunus persicaKNApSAcK Database
Prunus salicinaLOTUS Database
Prunus serotinaKNApSAcK Database
Prunus serrulataLOTUS Database
Prunus spinosaKNApSAcK Database
Prunus spp.KNApSAcK Database
Prunus ssioriLOTUS Database
Prunus virginianaKNApSAcK Database
Prunus zippelianaLOTUS Database
Psydrax lividaLOTUS Database
Pteridium aquilinumKNApSAcK Database
Pterocarpus soyauxiiKNApSAcK Database
Salix interiorLOTUS Database
Sambucus nigraKNApSAcK Database
Sanguisorba alpinaLOTUS Database
Sorbus commixtaKNApSAcK Database
Spatholobus suberectusKNApSAcK Database
Vasconcellea quercifoliaLOTUS Database
Vauquelinia corymbosaLOTUS Database
Vicia sativaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyanogenic glycosides. These are glycosides in which the aglycone moiety contains a cyanide group.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentCyanogenic glycosides
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility8.56 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.56ALOGPS
logP-0.82ChemAxon
logS-1ALOGPS
pKa (Strongest Acidic)12.21ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area123.17 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity70.1 m³·mol⁻¹ChemAxon
Polarizability28.55 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0034934
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB013526
KNApSAcK IDC00001454 C00034206
Chemspider ID106360
KEGG Compound IDC00844
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkPrunasin
METLIN IDNot Available
PubChem Compound119033
PDB IDNot Available
ChEBI ID17396
Good Scents IDrw1592501
References
General References
  1. Williams C, Allison SJ, Phillips RM, Linley PA, Wright CW: An Efficient Method for the Isolation of Toxins from Pteridium aquilinum and Evaluation of Ptaquiloside Against Cancer and Non-cancer Cells. Planta Med. 2021 Aug;87(10-11):892-895. doi: 10.1055/a-1494-3513. Epub 2021 May 21. [PubMed:34020492 ]
  2. Deng P, Cui B, Zhu H, Phommakoun B, Zhang D, Li Y, Zhao F, Zhao Z: Accumulation Pattern of Amygdalin and Prunasin and Its Correlation with Fruit and Kernel Agronomic Characteristics during Apricot (Prunus armeniaca L.) Kernel Development. Foods. 2021 Feb 11;10(2). pii: foods10020397. doi: 10.3390/foods10020397. [PubMed:33670310 ]
  3. Zhang D, Zhang L, Chen G, Xu Y, Yang H, Xiao Z, Chen J, Mu Y, Zhang H, Liu W, Liu P: Hepatoprotective effect of Xiayuxue decoction ethyl acetate fraction against carbon tetrachloride-induced liver fibrosis in mice via inducing apoptosis and suppressing activation of hepatic stellate cells. Pharm Biol. 2020 Dec;58(1):1229-1243. doi: 10.1080/13880209.2020.1855212. [PubMed:33332219 ]
  4. Guillamon JG, Prudencio AS, Yuste JE, Dicenta F, Sanchez-Perez R: Ascorbic acid and prunasin, two candidate biomarkers for endodormancy release in almond flower buds identified by a nontargeted metabolomic study. Hortic Res. 2020 Dec 1;7(1):203. doi: 10.1038/s41438-020-00427-5. [PubMed:33328455 ]
  5. Tanaka T, Kimura K, Kan K, Katori Y, Michishita K, Nakano H, Sasamoto T: Quantification of amygdalin, prunasin, total cyanide and free cyanide in powdered loquat seeds. Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2020 Sep;37(9):1503-1509. doi: 10.1080/19440049.2020.1778186. Epub 2020 Jul 3. [PubMed:32618500 ]
  6. Seigler, D. S., et al. (2002). Seigler, D. S., et al, Phytochemistry 60, 873 (2002). Phytochem..