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Record Information
Version2.0
Created at2021-06-19 20:07:17 UTC
Updated at2021-06-29 23:54:45 UTC
NP-MRD IDNP0028159
Secondary Accession NumbersNone
Natural Product Identification
Common Nameoleandomycin
Provided ByJEOL DatabaseJEOL Logo
DescriptionOleandomycin is also known as amimycin or matromycin. In humans, oleandomycin is involved in the troleandomycin action pathway. Oleandomycin is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. oleandomycin is found in Streptomyces, Streptomyces cyanogenus, Streptomyces globisporus and Streptomyces lividans. oleandomycin was first documented in 2016 (PMID: 27494903). Based on a literature review a significant number of articles have been published on Oleandomycin (PMID: 34254896) (PMID: 33878330) (PMID: 33545126) (PMID: 33463404) (PMID: 33036250) (PMID: 32693204).
Structure
Thumb
Synonyms
ValueSource
AmimycinChEBI
LandomycinChEBI
MatromycinChEBI
RomicilChEBI
Oleandomycin phosphateMeSH
Phosphate, oleandomycinMeSH
Chemical FormulaC35H61NO12
Average Mass687.8680 Da
Monoisotopic Mass687.41938 Da
IUPAC Name(3R,5R,6S,7R,8R,11R,12S,13R,14S,15S)-14-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-6-hydroxy-12-{[(2R,4S,5S,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-5,7,8,11,13,15-hexamethyl-1,9-dioxaspiro[2.13]hexadecane-4,10-dione
Traditional Nameoleandomycin
CAS Registry NumberNot Available
SMILES
[H]O[C@@]1([H])[C@]([H])(O[C@@]2([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]3(OC3([H])[H])C(=O)[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(C([H])([H])[H])[C@]([H])(OC(=O)[C@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]3([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])C3([H])[H])[C@]2([H])C([H])([H])[H])C([H])([H])[H])O[C@]([H])(C([H])([H])[H])C([H])([H])[C@]1([H])N(C([H])([H])[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C35H61NO12/c1-16-14-35(15-43-35)32(40)19(4)27(37)18(3)22(7)46-33(41)21(6)31(47-26-13-25(42-11)28(38)23(8)45-26)20(5)30(16)48-34-29(39)24(36(9)10)12-17(2)44-34/h16-31,34,37-39H,12-15H2,1-11H3/t16-,17+,18-,19+,20+,21+,22+,23-,24-,25-,26-,27-,28-,29+,30-,31-,34-,35+/m0/s1
InChI KeyRZPAKFUAFGMUPI-QESOVKLGSA-N
Experimental Spectra
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesJEOL database
    • Kim, B. S., et al, J. Antibiotics 58, 196 (2005)
Streptomyces cyanogenusLOTUS Database
Streptomyces globisporusLOTUS Database
Streptomyces lividansLOTUS Database
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Macrolide
  • Glycosyl compound
  • O-glycosyl compound
  • Monosaccharide
  • Oxane
  • 1,2-aminoalcohol
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Ketone
  • Lactone
  • Secondary alcohol
  • Tertiary amine
  • Tertiary aliphatic amine
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Dialkyl ether
  • Oxirane
  • Ether
  • Organonitrogen compound
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organopnictogen compound
  • Amine
  • Organic oxide
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.46ALOGPS
logP2.98ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)12.67ChemAxon
pKa (Strongest Basic)8.38ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area165.98 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity173.69 m³·mol⁻¹ChemAxon
Polarizability74.34 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDDB11442
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10190754
KEGG Compound IDC01946
BioCyc IDOLEANDOMYCIN
BiGG IDNot Available
Wikipedia LinkOleandomycin
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID16869
Good Scents IDNot Available
References
General References