Np mrd loader

Record Information
Version2.0
Created at2021-06-19 19:53:54 UTC
Updated at2021-06-29 23:54:14 UTC
NP-MRD IDNP0027854
Secondary Accession NumbersNone
Natural Product Identification
Common Namegymnocin-B
Provided ByJEOL DatabaseJEOL Logo
Description gymnocin-B is found in Karenia mikimotoi (Gymnodinium). gymnocin-B was first documented in 2005 (Satake, M., et al.). Based on a literature review very few articles have been published on (2E)-2-methyl-4-[(1R,3S,6R,8S,10R,12S,14R,16S,18S,20R,22S,23S,25R,27S,29R,31S,33R,36S,38R,40S,41S,43R,45S,47R,49S,51R,52S,55R,57S,59R,61S,63R,65S)-22,40,52-trihydroxy-51-(hydroxymethyl)-6,16,41,49,51-pentamethyl-2,7,11,15,19,24,28,32,37,42,46,50,56,60,64-pentadecaoxapentadecacyclo[34.30.0.0³,³³.0⁶,³¹.0⁸,²⁹.0¹⁰,²⁷.0¹²,²⁵.0¹⁴,²³.0¹⁶,²⁰.0³⁸,⁶⁵.0⁴¹,⁶³.0⁴³,⁶¹.0⁴⁵,⁵⁹.0⁴⁷,⁵⁷.0⁴⁹,⁵⁵]Hexahexacontan-18-yl]but-2-enal.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC62H92O20
Average Mass1157.3980 Da
Monoisotopic Mass1156.61820 Da
IUPAC Name(2E)-2-methyl-4-[(1R,3S,6R,8S,10R,12S,14R,16S,18S,20R,22S,23S,25R,27S,29R,31S,33R,36S,38R,40S,41S,43R,45S,47R,49S,51R,52S,55R,57S,59R,61S,63R,65S)-22,40,52-trihydroxy-51-(hydroxymethyl)-6,16,41,49,51-pentamethyl-2,7,11,15,19,24,28,32,37,42,46,50,56,60,64-pentadecaoxapentadecacyclo[34.30.0.0^{3,33}.0^{6,31}.0^{8,29}.0^{10,27}.0^{12,25}.0^{14,23}.0^{16,20}.0^{38,65}.0^{41,63}.0^{43,61}.0^{45,59}.0^{47,57}.0^{49,55}]hexahexacontan-18-yl]but-2-enal
Traditional Name(2E)-2-methyl-4-[(1R,3S,6R,8S,10R,12S,14R,16S,18S,20R,22S,23S,25R,27S,29R,31S,33R,36S,38R,40S,41S,43R,45S,47R,49S,51R,52S,55R,57S,59R,61S,63R,65S)-22,40,52-trihydroxy-51-(hydroxymethyl)-6,16,41,49,51-pentamethyl-2,7,11,15,19,24,28,32,37,42,46,50,56,60,64-pentadecaoxapentadecacyclo[34.30.0.0^{3,33}.0^{6,31}.0^{8,29}.0^{10,27}.0^{12,25}.0^{14,23}.0^{16,20}.0^{38,65}.0^{41,63}.0^{43,61}.0^{45,59}.0^{47,57}.0^{49,55}]hexahexacontan-18-yl]but-2-enal
CAS Registry NumberNot Available
SMILES
[H]OC([H])([H])[C@]1(O[C@@]2(C([H])([H])[H])C([H])([H])[C@@]3([H])O[C@@]4([H])C([H])([H])[C@@]5([H])O[C@]6(C([H])([H])[H])[C@]([H])(O[C@@]7([H])C([H])([H])[C@@]8([H])O[C@@]9([H])C([H])([H])C([H])([H])[C@]%10(O[C@@]%11([H])C([H])([H])[C@@]%12([H])O[C@@]%13([H])C([H])([H])[C@@]%14([H])O[C@@]%15(C([H])([H])[H])C([H])([H])[C@@]([H])(O[C@]%15([H])C([H])([H])[C@]([H])(O[H])[C@]%14([H])O[C@]%13([H])C([H])([H])[C@]%12([H])O[C@]%11([H])C([H])([H])[C@]%10([H])O[C@]9([H])C([H])([H])C([H])([H])[C@]8([H])O[C@]7([H])C([H])([H])[C@]6([H])O[H])C([H])([H])C(\[H])=C(\C([H])=O)C([H])([H])[H])C([H])([H])[H])C([H])([H])[C@]5([H])O[C@]4([H])C([H])([H])[C@]3([H])O[C@]2([H])C([H])([H])C([H])([H])[C@]1([H])O[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C62H92O20/c1-29(27-63)7-8-30-25-59(3)54(68-30)15-31(65)57-49(80-59)21-40-42(78-57)17-36-38(71-40)19-47-45(72-36)23-55-58(2,79-47)14-13-34-32(75-55)9-10-33-35(70-34)16-41-44(69-33)22-52(67)62(6)56(77-41)24-46-48(81-62)20-39-37(73-46)18-43-50(74-39)26-60(4)53(76-43)12-11-51(66)61(5,28-64)82-60/h7,27,30-57,64-67H,8-26,28H2,1-6H3/b29-7+/t30-,31-,32+,33-,34-,35+,36-,37+,38+,39-,40-,41-,42+,43-,44+,45+,46-,47-,48+,49+,50+,51-,52-,53+,54+,55-,56+,57-,58+,59-,60-,61+,62-/m0/s1
InChI KeyHARILJRNCKKWEI-KHANFNDVSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Karenia mikimotoiJEOL database
    • Satake, M., et al, Tetrahedron Letts. 46, 3537 (2005)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oxepanes. Oxepanes are compounds containing an oxepane ring, which is a seven-member saturated aliphatic heterocycle with one oxygen and six carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassOxepanes
Sub ClassNot Available
Direct ParentOxepanes
Alternative Parents
Substituents
  • Oxepane
  • Monosaccharide
  • Oxane
  • Alpha,beta-unsaturated aldehyde
  • Enal
  • Oxolane
  • Secondary alcohol
  • Oxacycle
  • Ether
  • Dialkyl ether
  • Polyol
  • Primary alcohol
  • Alcohol
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organic oxygen compound
  • Aldehyde
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.74ALOGPS
logP0.64ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)13.39ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area236.44 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity287.14 m³·mol⁻¹ChemAxon
Polarizability133.59 ųChemAxon
Number of Rings15ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9403673
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11228625
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Satake, M., et al. (2005). Satake, M., et al, Tetrahedron Letts. 46, 3537 (2005). Tetrahedron Lett.