NP-MRD: Showing NP-Card for Sesterterpenoic acid (NP0026098)

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Record Information

Version

2.0

Created at

2021-06-19 18:02:47 UTC

Updated at

2021-06-29 23:51:26 UTC

NP-MRD ID

NP0026098

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Sesterterpenoic acid

Provided By

JEOL Database JEOL Logo

Description

Sesterterpenoic acid is found in Henriettella fascicularis. Sesterterpenoic acid was first documented in 2002 (Calderon, A. I., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192120023D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306192120023D          

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   -4.0043   -2.5421   -2.5467 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0026098

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C(=C(/[H])C([H])([H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])\C([H])=C(C([H])([H])[H])/C([H])([H])C([H])([H])[C@]([H])(O[H])\C(=C([H])/C([H])([H])[C@]12[H])C([H])([H])[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H40O3/c1-17-9-12-23(26)19(3)10-11-22-21(14-16-25(22,5)15-13-17)18(2)7-6-8-20(4)24(27)28/h8,10,13,18,21-23,26H,6-7,9,11-12,14-16H2,1-5H3,(H,27,28)/b17-13-,19-10-,20-8+/t18-,21+,22+,23-,25+/m0/s1

> <INCHI_KEY>
BSSJWMDJGNMFKS-BHFUPUIBSA-N

> <FORMULA>
C25H40O3

> <MOLECULAR_WEIGHT>
388.592

> <EXACT_MASS>
388.297745148

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
46.13031671363534

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,6S)-6-[(1R,3aS,9S,12aR)-9-hydroxy-3a,6,10-trimethyl-1H,2H,3H,3aH,4H,7H,8H,9H,12H,12aH-cyclopenta[11]annulen-1-yl]-2-methylhept-2-enoic acid

> <ALOGPS_LOGP>
6.29

> <JCHEM_LOGP>
6.147265284666668

> <ALOGPS_LOGS>
-5.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
18.359964491984805

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.766735467126072

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3291518794609485

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
118.51279999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.83e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6S)-6-[(1R,3aS,9S,12aR)-9-hydroxy-3a,6,10-trimethyl-1H,2H,3H,4H,7H,8H,9H,12H,12aH-cyclopenta[11]annulen-1-yl]-2-methylhept-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 68 69  0  0  0  0  0  0  0  0999 V2000
   -3.8711    2.2323    0.3089 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1 29  1  0
  1 30  1  0
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 11 44  1  0
 11 45  1  0
 11 46  1  0
  6 35  1  0
  6 36  1  0
  6 37  1  0
 26 64  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.871   2.232   0.309  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.760   0.727   0.337  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.299   0.110   1.444  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.089  -1.367   1.682  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.639  -1.770   2.091  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.596  -3.304   2.255  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.244  -1.142   3.463  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.034  -0.250   3.206  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.651  -0.896   2.002  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.796  -0.060   1.367  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.342   1.293   0.805  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.949   0.119   2.386  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.246   0.725   1.832  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.852  -0.076   0.713  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.826  -1.004   0.813  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.470  -1.453   2.092  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.344  -1.698  -0.396  0.00  0.00           C+0
HETATM   18  O   UNK     0       7.241  -2.524  -0.403  0.00  0.00           O+0
HETATM   19  O   UNK     0       5.731  -1.344  -1.538  0.00  0.00           O+0
HETATM   20  C   UNK     0      -0.561  -1.223   1.090  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.160  -2.089  -0.117  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.250  -2.632  -1.001  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.024  -1.977  -1.891  0.00  0.00           C+0
HETATM   24  C   UNK     0      -2.959  -2.767  -2.778  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.004  -0.477  -2.113  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.371  -0.244  -3.375  0.00  0.00           O+0
HETATM   27  C   UNK     0      -3.380   0.206  -2.156  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.256   0.028  -0.911  0.00  0.00           C+0
HETATM   29  H   UNK     0      -3.593   2.688   1.266  0.00  0.00           H+0
HETATM   30  H   UNK     0      -4.900   2.535   0.089  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.212   2.652  -0.457  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.025   0.739   2.291  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.778  -1.668   2.483  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.385  -1.951   0.807  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.945  -3.826   1.360  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.584  -3.657   2.478  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.246  -3.624   3.078  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.957  -1.920   4.182  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.053  -0.576   3.935  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.372   0.767   2.979  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.615  -0.203   4.085  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.093  -1.848   2.332  0.00  0.00           H+0
HETATM   43  H   UNK     0       2.184  -0.645   0.525  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.002   1.967   1.597  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.159   1.791   0.274  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.532   1.180   0.079  0.00  0.00           H+0
HETATM   47  H   UNK     0       3.188  -0.857   2.829  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.610   0.757   3.211  0.00  0.00           H+0
HETATM   49  H   UNK     0       4.068   1.745   1.474  0.00  0.00           H+0
HETATM   50  H   UNK     0       4.961   0.840   2.655  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.444   0.163  -0.269  0.00  0.00           H+0
HETATM   52  H   UNK     0       7.520  -1.143   2.117  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.981  -1.051   2.983  0.00  0.00           H+0
HETATM   54  H   UNK     0       6.430  -2.545   2.179  0.00  0.00           H+0
HETATM   55  H   UNK     0       6.187  -1.881  -2.217  0.00  0.00           H+0
HETATM   56  H   UNK     0      -0.922  -0.271   0.696  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.434  -2.943   0.234  0.00  0.00           H+0
HETATM   58  H   UNK     0       0.526  -1.519  -0.757  0.00  0.00           H+0
HETATM   59  H   UNK     0      -1.353  -3.716  -0.942  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.827  -3.848  -2.659  0.00  0.00           H+0
HETATM   61  H   UNK     0      -4.004  -2.542  -2.547  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.776  -2.534  -3.832  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.388   0.032  -1.369  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.546  -0.760  -3.364  0.00  0.00           H+0
HETATM   65  H   UNK     0      -3.938  -0.159  -3.029  0.00  0.00           H+0
HETATM   66  H   UNK     0      -3.233   1.274  -2.365  0.00  0.00           H+0
HETATM   67  H   UNK     0      -4.438  -1.034  -0.732  0.00  0.00           H+0
HETATM   68  H   UNK     0      -5.251   0.435  -1.141  0.00  0.00           H+0
CONECT    1    2   29   30   31                                             
CONECT    2    1   28    3                                                  
CONECT    3   32    4    2                                                  
CONECT    4    3    5   33   34                                             
CONECT    5    4   20    6    7                                             
CONECT    6    5   35   36   37                                             
CONECT    7    8    5   38   39                                             
CONECT    8    7    9   40   41                                             
CONECT    9    8   10   20   42                                             
CONECT   10    9   12   11   43                                             
CONECT   11   10   44   45   46                                             
CONECT   12   10   13   47   48                                             
CONECT   13   12   14   49   50                                             
CONECT   14   13   15   51                                                  
CONECT   15   14   17   16                                                  
CONECT   16   15   52   53   54                                             
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   55                                                       
CONECT   20   56    9    5   21                                             
CONECT   21   20   22   57   58                                             
CONECT   22   59   23   21                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23   60   61   62                                             
CONECT   25   23   27   26   63                                             
CONECT   26   25   64                                                       
CONECT   27   25   28   65   66                                             
CONECT   28   27    2   67   68                                             
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    3                                                            
CONECT   33    4                                                            
CONECT   34    4                                                            
CONECT   35    6                                                            
CONECT   36    6                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    7                                                            
CONECT   40    8                                                            
CONECT   41    8                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   11                                                            
CONECT   46   11                                                            
CONECT   47   12                                                            
CONECT   48   12                                                            
CONECT   49   13                                                            
CONECT   50   13                                                            
CONECT   51   14                                                            
CONECT   52   16                                                            
CONECT   53   16                                                            
CONECT   54   16                                                            
CONECT   55   19                                                            
CONECT   56   20                                                            
CONECT   57   21                                                            
CONECT   58   21                                                            
CONECT   59   22                                                            
CONECT   60   24                                                            
CONECT   61   24                                                            
CONECT   62   24                                                            
CONECT   63   25                                                            
CONECT   64   26                                                            
CONECT   65   27                                                            
CONECT   66   27                                                            
CONECT   67   28                                                            
CONECT   68   28                                                            
MASTER        0    0    0    0    0    0    0    0   68    0  138    0
END

RDKit          3D

68 69  0  0  0  0  0  0  0  0999 V2000
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 26 64  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₄₀O₃

Average Mass

388.5920 Da

Monoisotopic Mass

388.29775 Da

IUPAC Name

(2E,6S)-6-[(1R,3aS,9S,12aR)-9-hydroxy-3a,6,10-trimethyl-1H,2H,3H,3aH,4H,7H,8H,9H,12H,12aH-cyclopenta[11]annulen-1-yl]-2-methylhept-2-enoic acid

Traditional Name

(2E,6S)-6-[(1R,3aS,9S,12aR)-9-hydroxy-3a,6,10-trimethyl-1H,2H,3H,4H,7H,8H,9H,12H,12aH-cyclopenta[11]annulen-1-yl]-2-methylhept-2-enoic acid

CAS Registry Number

Not Available

SMILES

[H]OC(=O)C(=C(/[H])C([H])([H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])C([H])([H])\C([H])=C(C([H])([H])[H])/C([H])([H])C([H])([H])[C@]([H])(O[H])\C(=C([H])/C([H])([H])[C@]12[H])C([H])([H])[H])\C([H])([H])[H]

InChI Identifier

InChI=1S/C25H40O3/c1-17-9-12-23(26)19(3)10-11-22-21(14-16-25(22,5)15-13-17)18(2)7-6-8-20(4)24(27)28/h8,10,13,18,21-23,26H,6-7,9,11-12,14-16H2,1-5H3,(H,27,28)/b17-13-,19-10-,20-8+/t18-,21+,22+,23-,25+/m0/s1

InChI Key

BSSJWMDJGNMFKS-BHFUPUIBSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Henriettea fascicularis	JEOL database	Calderon, A. I., et al, J. Nat. Prod. 65, 1749 (2002)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.29	ALOGPS
logP	6.15	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	4.77	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	118.51 m³·mol⁻¹	ChemAxon
Polarizability	46.13 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Calderon, A. I., et al. (2002). Calderon, A. I., et al, J. Nat. Prod. 65, 1749 (2002). J. Nat. Prod..

Showing NP-Card for Sesterterpenoic acid (NP0026098)

MOL for NP0026098 (Sesterterpenoic acid)

3D MOL for NP0026098 (Sesterterpenoic acid)

3D SDF for NP0026098 (Sesterterpenoic acid)

3D-SDF for NP0026098 (Sesterterpenoic acid)

PDB for NP0026098 (Sesterterpenoic acid)

3D PDB for NP0026098 (Sesterterpenoic acid)

SMILES for NP0026098 (Sesterterpenoic acid)

INCHI for NP0026098 (Sesterterpenoic acid)

Structure for NP0026098 (Sesterterpenoic acid)

3D Structure for NP0026098 (Sesterterpenoic acid)