NP-MRD: Showing NP-Card for Plakortide J. Plakortide N (NP0025401)

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Record Information

Version

2.0

Created at

2021-06-19 17:32:18 UTC

Updated at

2021-06-29 23:50:20 UTC

NP-MRD ID

NP0025401

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Plakortide J. Plakortide N

Provided By

JEOL Database JEOL Logo

Description

Plakortide J. Plakortide N is found in Plakortis sp. Plakortide J. Plakortide N was first documented in 2001 (Hu, J.-F., et al.). Based on a literature review very few articles have been published on methyl 2-[(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119323D          

 51 51  0  0  0  0            999 V2000
   -1.4541    0.3573    2.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4741   -0.3971    2.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5957   -0.0366    0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2941    1.4546    0.3266 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2073    1.7887   -1.1827 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5076    1.7634   -1.9731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7665    1.7556   -1.5013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9853    1.6731   -2.3812 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9604    2.8489   -2.1856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3497    4.1828   -2.6206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2496    2.5917   -2.9696 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4927    3.1549   -1.3936 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2149    4.3571   -0.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6991    0.8188   -1.7631 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0640   -0.4998   -1.6650 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525   -0.9547   -0.3124 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7519   -1.0453   -0.0044 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0834   -2.1457    0.9700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3315   -3.0457    1.3142 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.9953    1.4037 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7931   -3.0008    2.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970   -0.0216    4.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6699    1.6919    0.7966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    2.0895    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3626    1.7279   -3.0530 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4996    0.7344   -2.1384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6972    1.6034   -3.4380 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4825    4.4415   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0291    4.1505   -3.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7246    1.6607   -2.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9680    3.4037   -2.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2925    4.2690    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1760   -2.9779    3.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
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 15 16  1  0  0  0  0
  9 10  1  0  0  0  0
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  5 12  1  0  0  0  0
  3  4  1  0  0  0  0
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 16 17  1  0  0  0  0
  6  7  2  0  0  0  0
 17 18  1  0  0  0  0
  5  4  1  0  0  0  0
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  7  8  1  0  0  0  0
 18 20  1  0  0  0  0
 14 15  1  0  0  0  0
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  8  9  1  0  0  0  0
  9 11  1  0  0  0  0
 16 46  1  6  0  0  0
  3 27  1  6  0  0  0
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  8 33  1  0  0  0  0
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 10 35  1  0  0  0  0
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 13 45  1  0  0  0  0
  2 25  1  0  0  0  0
  2 26  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
 17 47  1  0  0  0  0
 17 48  1  0  0  0  0
 21 49  1  0  0  0  0
 21 50  1  0  0  0  0
 21 51  1  0  0  0  0
 11 38  1  0  0  0  0
 11 39  1  0  0  0  0
 11 40  1  0  0  0  0
M  END

     RDKit          3D

 51 51  0  0  0  0  0  0  0  0999 V2000
   -1.4541    0.3573    2.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4741   -0.3971    2.0920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5957   -0.0366    0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.2073    1.7887   -1.1827 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5076    1.7634   -1.9731 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2149    4.3571   -0.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0640   -0.4998   -1.6650 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525   -0.9547   -0.3124 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7519   -1.0453   -0.0044 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3315   -3.0457    1.3142 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.9953    1.4037 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7931   -3.0008    2.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970   -0.0216    4.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4830    0.2299    2.6299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2269    1.4268    3.0126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5428   -0.2051    2.4524 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306192119323D          

 51 51  0  0  0  0            999 V2000
   -1.4541    0.3573    2.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4741   -0.3971    2.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5957   -0.0366    0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2941    1.4546    0.3266 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.5076    1.7634   -1.9731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7665    1.7556   -1.5013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9853    1.6731   -2.3812 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9604    2.8489   -2.1856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3497    4.1828   -2.6206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2496    2.5917   -2.9696 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4927    3.1549   -1.3936 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2149    4.3571   -0.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6991    0.8188   -1.7631 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0640   -0.4998   -1.6650 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.0529    2.5133   -4.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2925    4.2690    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1911   -1.9567   -0.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3094   -1.2596   -0.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7594   -3.9891    1.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1760   -2.9779    3.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8277   -2.7863    2.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  0  0  0  0
  9 10  1  0  0  0  0
 16  3  1  0  0  0  0
  5 12  1  0  0  0  0
  3  4  1  0  0  0  0
 12 13  1  0  0  0  0
  3  2  1  0  0  0  0
  5  6  1  6  0  0  0
  2  1  1  0  0  0  0
  5 14  1  0  0  0  0
 16 17  1  0  0  0  0
  6  7  2  0  0  0  0
 17 18  1  0  0  0  0
  5  4  1  0  0  0  0
 18 19  2  0  0  0  0
  7  8  1  0  0  0  0
 18 20  1  0  0  0  0
 14 15  1  0  0  0  0
 20 21  1  0  0  0  0
  8  9  1  0  0  0  0
  9 11  1  0  0  0  0
 16 46  1  6  0  0  0
  3 27  1  6  0  0  0
  4 28  1  0  0  0  0
  4 29  1  0  0  0  0
  6 30  1  0  0  0  0
  7 31  1  0  0  0  0
  8 32  1  0  0  0  0
  8 33  1  0  0  0  0
  9 34  1  1  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
 10 37  1  0  0  0  0
 12 41  1  0  0  0  0
 12 42  1  0  0  0  0
 13 43  1  0  0  0  0
 13 44  1  0  0  0  0
 13 45  1  0  0  0  0
  2 25  1  0  0  0  0
  2 26  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
 17 47  1  0  0  0  0
 17 48  1  0  0  0  0
 21 49  1  0  0  0  0
 21 50  1  0  0  0  0
 21 51  1  0  0  0  0
 11 38  1  0  0  0  0
 11 39  1  0  0  0  0
 11 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0025401

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]\C(=C(\[H])[C@@]1(OO[C@@]([H])(C([H])([H])C(=O)OC([H])([H])[H])[C@@]([H])(C([H])([H])C([H])([H])[H])C1([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H30O4/c1-6-14-12-17(7-2,10-8-9-13(3)4)21-20-15(14)11-16(18)19-5/h8,10,13-15H,6-7,9,11-12H2,1-5H3/b10-8+/t14-,15-,17-/m0/s1

> <INCHI_KEY>
SCTUFRCXFQMBTG-XHULPDOYSA-N

> <FORMULA>
C17H30O4

> <MOLECULAR_WEIGHT>
298.423

> <EXACT_MASS>
298.214409446

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
34.75381966017335

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 2-[(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetate

> <ALOGPS_LOGP>
4.94

> <JCHEM_LOGP>
4.601622537666666

> <ALOGPS_LOGS>
-5.06

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.852303005883468

> <JCHEM_POLAR_SURFACE_AREA>
44.760000000000005

> <JCHEM_REFRACTIVITY>
83.34989999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.60e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl [(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 51 51  0  0  0  0  0  0  0  0999 V2000
   -1.4541    0.3573    2.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4741   -0.3971    2.0920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5957   -0.0366    0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2941    1.4546    0.3266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2073    1.7887   -1.1827 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5076    1.7634   -1.9731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7665    1.7556   -1.5013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9853    1.6731   -2.3812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9604    2.8489   -2.1856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3497    4.1828   -2.6206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2496    2.5917   -2.9696 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4927    3.1549   -1.3936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2149    4.3571   -0.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6991    0.8188   -1.7631 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0640   -0.4998   -1.6650 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525   -0.9547   -0.3124 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7519   -1.0453   -0.0044 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0834   -2.1457    0.9700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3315   -3.0457    1.3142 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.9953    1.4037 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7931   -3.0008    2.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970   -0.0216    4.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4830    0.2299    2.6299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2269    1.4268    3.0126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5428   -0.2051    2.4524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6655   -1.4693    2.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6425   -0.2028    0.3119 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6699    1.6919    0.7966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    2.0895    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3626    1.7279   -3.0530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9577    1.7819   -0.4320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4996    0.7344   -2.1384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6972    1.6034   -3.4380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2230    2.9231   -1.1222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0771    4.9950   -2.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4825    4.4415   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0291    4.1505   -3.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7246    1.6607   -2.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9680    3.4037   -2.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0529    2.5133   -4.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6304    3.3332   -2.4692 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5124    3.1045   -0.9876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2189    4.4863   -1.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3508    5.2695   -0.9997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2925    4.2690    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1911   -1.9567   -0.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1229   -0.0953    0.3944 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3094   -1.2596   -0.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7594   -3.9891    1.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1760   -2.9779    3.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8277   -2.7863    2.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  0
  9 10  1  0
 16  3  1  0
  5 12  1  0
  3  4  1  0
 12 13  1  0
  3  2  1  0
  5  6  1  6
  2  1  1  0
  5 14  1  0
 16 17  1  0
  6  7  2  0
 17 18  1  0
  5  4  1  0
 18 19  2  0
  7  8  1  0
 18 20  1  0
 14 15  1  0
 20 21  1  0
  8  9  1  0
  9 11  1  0
 16 46  1  6
  3 27  1  6
  4 28  1  0
  4 29  1  0
  6 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  1
 10 35  1  0
 10 36  1  0
 10 37  1  0
 12 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 13 45  1  0
  2 25  1  0
  2 26  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
 17 47  1  0
 17 48  1  0
 21 49  1  0
 21 50  1  0
 21 51  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.454   0.357   2.981  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.474  -0.397   2.092  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.596  -0.037   0.601  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.294   1.455   0.327  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.207   1.789  -1.183  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.508   1.763  -1.973  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.767   1.756  -1.501  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.985   1.673  -2.381  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.960   2.849  -2.186  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.350   4.183  -2.621  0.00  0.00           C+0
HETATM   11  C   UNK     0      -6.250   2.592  -2.970  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.493   3.155  -1.394  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.215   4.357  -0.783  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.699   0.819  -1.763  0.00  0.00           O+0
HETATM   15  O   UNK     0       0.064  -0.500  -1.665  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.253  -0.955  -0.312  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.752  -1.045  -0.004  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.083  -2.146   0.970  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.331  -3.046   1.314  0.00  0.00           O+0
HETATM   20  O   UNK     0       3.368  -1.995   1.404  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.793  -3.001   2.325  0.00  0.00           C+0
HETATM   22  H   UNK     0      -1.397  -0.022   4.006  0.00  0.00           H+0
HETATM   23  H   UNK     0      -2.483   0.230   2.630  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.227   1.427   3.013  0.00  0.00           H+0
HETATM   25  H   UNK     0       0.543  -0.205   2.452  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.666  -1.469   2.217  0.00  0.00           H+0
HETATM   27  H   UNK     0      -1.643  -0.203   0.312  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.670   1.692   0.797  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.039   2.090   0.819  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.363   1.728  -3.053  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.958   1.782  -0.432  0.00  0.00           H+0
HETATM   32  H   UNK     0      -4.500   0.734  -2.138  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.697   1.603  -3.438  0.00  0.00           H+0
HETATM   34  H   UNK     0      -5.223   2.923  -1.122  0.00  0.00           H+0
HETATM   35  H   UNK     0      -5.077   4.995  -2.515  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.482   4.441  -2.007  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.029   4.151  -3.668  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.725   1.661  -2.643  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.968   3.404  -2.815  0.00  0.00           H+0
HETATM   40  H   UNK     0      -6.053   2.513  -4.044  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.630   3.333  -2.469  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.512   3.104  -0.988  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.219   4.486  -1.195  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.351   5.269  -1.000  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.293   4.269   0.304  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.191  -1.957  -0.287  0.00  0.00           H+0
HETATM   47  H   UNK     0       2.123  -0.095   0.394  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.309  -1.260  -0.925  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.759  -3.989   1.856  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.176  -2.978   3.229  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.828  -2.786   2.607  0.00  0.00           H+0
CONECT    1    2   22   23   24                                             
CONECT    2    3    1   25   26                                             
CONECT    3   16    4    2   27                                             
CONECT    4    3    5   28   29                                             
CONECT    5   12    6   14    4                                             
CONECT    6    5    7   30                                                  
CONECT    7    6    8   31                                                  
CONECT    8    7    9   32   33                                             
CONECT    9   10    8   11   34                                             
CONECT   10    9   35   36   37                                             
CONECT   11    9   38   39   40                                             
CONECT   12    5   13   41   42                                             
CONECT   13   12   43   44   45                                             
CONECT   14    5   15                                                       
CONECT   15   16   14                                                       
CONECT   16   15    3   17   46                                             
CONECT   17   16   18   47   48                                             
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   49   50   51                                             
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    2                                                            
CONECT   26    2                                                            
CONECT   27    3                                                            
CONECT   28    4                                                            
CONECT   29    4                                                            
CONECT   30    6                                                            
CONECT   31    7                                                            
CONECT   32    8                                                            
CONECT   33    8                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   10                                                            
CONECT   37   10                                                            
CONECT   38   11                                                            
CONECT   39   11                                                            
CONECT   40   11                                                            
CONECT   41   12                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   13                                                            
CONECT   45   13                                                            
CONECT   46   16                                                            
CONECT   47   17                                                            
CONECT   48   17                                                            
CONECT   49   21                                                            
CONECT   50   21                                                            
CONECT   51   21                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  102    0
END

RDKit          3D

51 51  0  0  0  0  0  0  0  0999 V2000
   -1.4541    0.3573    2.9809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4741   -0.3971    2.0920 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5957   -0.0366    0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2941    1.4546    0.3266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2073    1.7887   -1.1827 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5076    1.7634   -1.9731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7665    1.7556   -1.5013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9853    1.6731   -2.3812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9604    2.8489   -2.1856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3497    4.1828   -2.6206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2496    2.5917   -2.9696 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4927    3.1549   -1.3936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2149    4.3571   -0.7834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6991    0.8188   -1.7631 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0640   -0.4998   -1.6650 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525   -0.9547   -0.3124 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7519   -1.0453   -0.0044 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0834   -2.1457    0.9700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3315   -3.0457    1.3142 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3679   -1.9953    1.4037 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7931   -3.0008    2.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970   -0.0216    4.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4830    0.2299    2.6299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2269    1.4268    3.0126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5428   -0.2051    2.4524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6655   -1.4693    2.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6425   -0.2028    0.3119 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6699    1.6919    0.7966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    2.0895    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3626    1.7279   -3.0530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9577    1.7819   -0.4320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4996    0.7344   -2.1384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6972    1.6034   -3.4380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2230    2.9231   -1.1222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0771    4.9950   -2.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4825    4.4415   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0291    4.1505   -3.6675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7246    1.6607   -2.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9680    3.4037   -2.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0529    2.5133   -4.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6304    3.3332   -2.4692 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5124    3.1045   -0.9876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2189    4.4863   -1.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3508    5.2695   -0.9997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2925    4.2690    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1911   -1.9567   -0.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1229   -0.0953    0.3944 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3094   -1.2596   -0.9245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7594   -3.9891    1.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1760   -2.9779    3.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8277   -2.7863    2.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  0
  9 10  1  0
 16  3  1  0
  5 12  1  0
  3  4  1  0
 12 13  1  0
  3  2  1  0
  5  6  1  6
  2  1  1  0
  5 14  1  0
 16 17  1  0
  6  7  2  0
 17 18  1  0
  5  4  1  0
 18 19  2  0
  7  8  1  0
 18 20  1  0
 14 15  1  0
 20 21  1  0
  8  9  1  0
  9 11  1  0
 16 46  1  6
  3 27  1  6
  4 28  1  0
  4 29  1  0
  6 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  1
 10 35  1  0
 10 36  1  0
 10 37  1  0
 12 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 13 45  1  0
  2 25  1  0
  2 26  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
 17 47  1  0
 17 48  1  0
 21 49  1  0
 21 50  1  0
 21 51  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Value	Source
Methyl 2-[(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetic acid	Generator

Chemical Formula

C₁₇H₃₀O₄

Average Mass

298.4230 Da

Monoisotopic Mass

298.21441 Da

IUPAC Name

methyl 2-[(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetate

Traditional Name

methyl [(3S,4S,6R)-4,6-diethyl-6-[(1E)-4-methylpent-1-en-1-yl]-1,2-dioxan-3-yl]acetate

CAS Registry Number

Not Available

SMILES

[H]\C(=C(\[H])[C@@]1(OO[C@@]([H])(C([H])([H])C(=O)OC([H])([H])[H])[C@@]([H])(C([H])([H])C([H])([H])[H])C1([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C17H30O4/c1-6-14-12-17(7-2,10-8-9-13(3)4)21-20-15(14)11-16(18)19-5/h8,10,13-15H,6-7,9,11-12H2,1-5H3/b10-8+/t14-,15-,17-/m0/s1

InChI Key

SCTUFRCXFQMBTG-XHULPDOYSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plakortis sp.	JEOL database	Hu, J.-F., et al, Tetrahedron 57, 9379 (2001)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.94	ALOGPS
logP	4.6	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	44.76 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	83.35 m³·mol⁻¹	ChemAxon
Polarizability	34.75 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9316175

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11141063

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hu, J.-F., et al. (2001). Hu, J.-F., et al, Tetrahedron 57, 9379 (2001). Tetrahedron.

Showing NP-Card for Plakortide J. Plakortide N (NP0025401)

MOL for NP0025401 (Plakortide J. Plakortide N)

3D MOL for NP0025401 (Plakortide J. Plakortide N)

3D SDF for NP0025401 (Plakortide J. Plakortide N)

3D-SDF for NP0025401 (Plakortide J. Plakortide N)

PDB for NP0025401 (Plakortide J. Plakortide N)

3D PDB for NP0025401 (Plakortide J. Plakortide N)

SMILES for NP0025401 (Plakortide J. Plakortide N)

INCHI for NP0025401 (Plakortide J. Plakortide N)

Structure for NP0025401 (Plakortide J. Plakortide N)

3D Structure for NP0025401 (Plakortide J. Plakortide N)