NP-MRD: Showing NP-Card for Secopachyclavulariaenone A (NP0025396)

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Record Information

Version

2.0

Created at

2021-06-19 17:32:05 UTC

Updated at

2021-06-29 23:50:19 UTC

NP-MRD ID

NP0025396

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Secopachyclavulariaenone A

Provided By

JEOL Database JEOL Logo

Description

Secopachyclavulariaenone A is found in Pachyclavularia violacea. Secopachyclavulariaenone A was first documented in 2001 (Sheu, J.-H., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119323D          

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     RDKit          3D

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  Mrv1652306192119323D          

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   -0.6539    7.1851    1.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 22  1  6  0  0  0
  7 20  1  0  0  0  0
 22 23  2  0  0  0  0
  7  6  1  0  0  0  0
 23 24  1  0  0  0  0
 16 18  1  0  0  0  0
 24 51  1  0  0  0  0
  5  6  1  0  0  0  0
 24 25  2  0  0  0  0
 20 19  1  0  0  0  0
  5  4  1  0  0  0  0
 18 19  1  0  0  0  0
  4  2  1  0  0  0  0
 15  8  1  0  0  0  0
  2  1  1  0  0  0  0
  5  9  1  0  0  0  0
  2  3  2  0  0  0  0
  9  8  1  0  0  0  0
 10 11  1  0  0  0  0
  8  7  1  0  0  0  0
 13 14  2  0  0  0  0
 15 16  1  0  0  0  0
 20 21  1  0  0  0  0
 15 13  1  0  0  0  0
  9 34  1  6  0  0  0
  9 10  1  0  0  0  0
 16 17  1  0  0  0  0
 10 12  2  0  0  0  0
  8 33  1  6  0  0  0
 12 13  1  0  0  0  0
 15 39  1  1  0  0  0
  7 32  1  6  0  0  0
  5 31  1  1  0  0  0
 16 40  1  6  0  0  0
 18 44  1  0  0  0  0
 18 45  1  0  0  0  0
 12 38  1  0  0  0  0
 22 49  1  0  0  0  0
 23 50  1  0  0  0  0
  4 29  1  0  0  0  0
  4 30  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
 11 35  1  0  0  0  0
 11 36  1  0  0  0  0
 11 37  1  0  0  0  0
 21 46  1  0  0  0  0
 21 47  1  0  0  0  0
 21 48  1  0  0  0  0
 17 41  1  0  0  0  0
 17 42  1  0  0  0  0
 17 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0025396

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C(=O)C(\[H])=C(/[H])[C@@]1(OC([H])([H])[C@]([H])(C([H])([H])[H])[C@@]2([H])C(=O)C([H])=C(C([H])([H])[H])[C@@]3([H])[C@]([H])(O[C@]1([H])[C@@]23[H])C([H])([H])C(=O)C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O5/c1-11-8-14(23)16-12(2)10-24-20(4,6-5-7-21)19-18(16)17(11)15(25-19)9-13(3)22/h5-8,12,15-19H,9-10H2,1-4H3/b6-5+/t12-,15+,16-,17-,18-,19+,20-/m0/s1

> <INCHI_KEY>
SPGKLZOENIXNTQ-CXVQPUGHSA-N

> <FORMULA>
C20H26O5

> <MOLECULAR_WEIGHT>
346.423

> <EXACT_MASS>
346.178023937

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
37.01758876812603

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E)-3-[(1R,3R,4S,8R,9R,12S,13R)-5,9,12-trimethyl-7-oxo-3-(2-oxopropyl)-2,11-dioxatricyclo[6.4.1.0^{4,13}]tridec-5-en-12-yl]prop-2-enal

> <ALOGPS_LOGP>
2.75

> <JCHEM_LOGP>
1.6383931236666658

> <ALOGPS_LOGS>
-3.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.422167448166068

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.13926597809833

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8569005585135163

> <JCHEM_POLAR_SURFACE_AREA>
69.67000000000002

> <JCHEM_REFRACTIVITY>
94.80799999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.69e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-3-[(1R,3R,4S,8R,9R,12S,13R)-5,9,12-trimethyl-7-oxo-3-(2-oxopropyl)-2,11-dioxatricyclo[6.4.1.0^{4,13}]tridec-5-en-12-yl]prop-2-enal

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 51 53  0  0  0  0  0  0  0  0999 V2000
   -0.6974   -3.0259    1.4401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6325   -2.8405   -0.0531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0815   -3.6861   -0.8278 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0490   -1.5448   -0.5727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1299   -0.4683   -0.5548 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0536    0.1883    0.7303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2339    1.6084    0.5448 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6653    1.9096   -0.8393 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0799    0.6515   -1.6139 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3508    0.4236   -2.9107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -0.5994   -3.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7053    1.1630   -3.2808 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2401    2.2377   -2.4146 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0313    3.0444   -2.8996 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8302    2.2810   -0.9463 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8519    1.5072   -0.0740 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2588    2.1295   -0.2034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4927    1.4687    1.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7275    2.6070    1.7852 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6999    2.4570    1.7406 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1460    1.8520    3.0824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2923    3.8556    1.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6060    5.0066    1.5482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3147    6.3026    1.4492 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5334    6.4027    1.3867 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4374   -2.3451    1.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9860   -4.0557    1.6684 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2857   -2.8378    1.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3355   -1.7580   -1.5726 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8082   -1.2965    0.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1218   -0.9366   -0.6064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3262    1.7381    0.5028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2147    2.7662   -1.2588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1296    0.8286   -1.9019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9938   -1.5854   -3.3782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9542   -0.3035   -4.1359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3507   -0.7027   -4.7645 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1934    1.0528   -4.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8952    3.3434   -0.6677 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9555    0.4805   -0.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6463    2.0446   -1.2226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9764    1.6108    0.4423 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2523    3.1878    0.0786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014    1.4944    2.0345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0047    0.5344    1.7074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2356    1.7511    3.1402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7043    0.8634    3.2471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8138    2.4748    3.9221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3823    3.9039    1.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4768    5.0458    1.5451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6539    7.1851    1.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 22  1  6
  7 20  1  0
 22 23  2  0
  7  6  1  0
 23 24  1  0
 16 18  1  0
 24 51  1  0
  5  6  1  0
 24 25  2  0
 20 19  1  0
  5  4  1  0
 18 19  1  0
  4  2  1  0
 15  8  1  0
  2  1  1  0
  5  9  1  0
  2  3  2  0
  9  8  1  0
 10 11  1  0
  8  7  1  0
 13 14  2  0
 15 16  1  0
 20 21  1  0
 15 13  1  0
  9 34  1  6
  9 10  1  0
 16 17  1  0
 10 12  2  0
  8 33  1  6
 12 13  1  0
 15 39  1  1
  7 32  1  6
  5 31  1  1
 16 40  1  6
 18 44  1  0
 18 45  1  0
 12 38  1  0
 22 49  1  0
 23 50  1  0
  4 29  1  0
  4 30  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
 11 35  1  0
 11 36  1  0
 11 37  1  0
 21 46  1  0
 21 47  1  0
 21 48  1  0
 17 41  1  0
 17 42  1  0
 17 43  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.697  -3.026   1.440  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.633  -2.841  -0.053  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.081  -3.686  -0.828  0.00  0.00           O+0
HETATM    4  C   UNK     0      -0.049  -1.545  -0.573  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.130  -0.468  -0.555  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.054   0.188   0.730  0.00  0.00           O+0
HETATM    7  C   UNK     0      -1.234   1.608   0.545  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.665   1.910  -0.839  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.080   0.652  -1.614  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.351   0.424  -2.911  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.940  -0.599  -3.847  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.705   1.163  -3.281  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.240   2.238  -2.415  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.031   3.044  -2.900  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.830   2.281  -0.946  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.852   1.507  -0.074  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.259   2.130  -0.203  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.493   1.469   1.422  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.728   2.607   1.785  0.00  0.00           O+0
HETATM   20  C   UNK     0      -0.700   2.457   1.741  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.146   1.852   3.082  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.292   3.856   1.639  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.606   5.007   1.548  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.315   6.303   1.449  0.00  0.00           C+0
HETATM   25  O   UNK     0      -2.533   6.403   1.387  0.00  0.00           O+0
HETATM   26  H   UNK     0      -1.437  -2.345   1.866  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.986  -4.056   1.668  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.286  -2.838   1.879  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.336  -1.758  -1.573  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.808  -1.297   0.059  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.122  -0.937  -0.606  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.326   1.738   0.503  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.215   2.766  -1.259  0.00  0.00           H+0
HETATM   34  H   UNK     0      -2.130   0.829  -1.902  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.994  -1.585  -3.378  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.954  -0.304  -4.136  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.351  -0.703  -4.765  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.193   1.053  -4.244  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.895   3.343  -0.668  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.956   0.481  -0.438  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.646   2.045  -1.223  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.976   1.611   0.442  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.252   3.188   0.079  0.00  0.00           H+0
HETATM   44  H   UNK     0       2.401   1.494   2.034  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.005   0.534   1.707  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.236   1.751   3.140  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.704   0.863   3.247  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.814   2.475   3.922  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.382   3.904   1.649  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.477   5.046   1.545  0.00  0.00           H+0
HETATM   51  H   UNK     0      -0.654   7.185   1.431  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    4    1    3                                                  
CONECT    3    2                                                            
CONECT    4    5    2   29   30                                             
CONECT    5    6    4    9   31                                             
CONECT    6    7    5                                                       
CONECT    7   20    6    8   32                                             
CONECT    8   15    9    7   33                                             
CONECT    9    5    8   34   10                                             
CONECT   10   11    9   12                                                  
CONECT   11   10   35   36   37                                             
CONECT   12   10   13   38                                                  
CONECT   13   14   15   12                                                  
CONECT   14   13                                                            
CONECT   15    8   16   13   39                                             
CONECT   16   18   15   17   40                                             
CONECT   17   16   41   42   43                                             
CONECT   18   16   19   44   45                                             
CONECT   19   20   18                                                       
CONECT   20   22    7   19   21                                             
CONECT   21   20   46   47   48                                             
CONECT   22   20   23   49                                                  
CONECT   23   22   24   50                                                  
CONECT   24   23   51   25                                                  
CONECT   25   24                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    4                                                            
CONECT   30    4                                                            
CONECT   31    5                                                            
CONECT   32    7                                                            
CONECT   33    8                                                            
CONECT   34    9                                                            
CONECT   35   11                                                            
CONECT   36   11                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   15                                                            
CONECT   40   16                                                            
CONECT   41   17                                                            
CONECT   42   17                                                            
CONECT   43   17                                                            
CONECT   44   18                                                            
CONECT   45   18                                                            
CONECT   46   21                                                            
CONECT   47   21                                                            
CONECT   48   21                                                            
CONECT   49   22                                                            
CONECT   50   23                                                            
CONECT   51   24                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  106    0
END

RDKit          3D

51 53  0  0  0  0  0  0  0  0999 V2000
   -0.6974   -3.0259    1.4401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6325   -2.8405   -0.0531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0815   -3.6861   -0.8278 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0490   -1.5448   -0.5727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1299   -0.4683   -0.5548 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0536    0.1883    0.7303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2339    1.6084    0.5448 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6653    1.9096   -0.8393 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0799    0.6515   -1.6139 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3508    0.4236   -2.9107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -0.5994   -3.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7053    1.1630   -3.2808 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2401    2.2377   -2.4146 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0313    3.0444   -2.8996 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8302    2.2810   -0.9463 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8519    1.5072   -0.0740 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2588    2.1295   -0.2034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4927    1.4687    1.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7275    2.6070    1.7852 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6999    2.4570    1.7406 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1460    1.8520    3.0824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2923    3.8556    1.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6060    5.0066    1.5482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3147    6.3026    1.4492 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5334    6.4027    1.3867 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4374   -2.3451    1.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9860   -4.0557    1.6684 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2857   -2.8378    1.8790 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3355   -1.7580   -1.5726 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8082   -1.2965    0.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1218   -0.9366   -0.6064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3262    1.7381    0.5028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2147    2.7662   -1.2588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1296    0.8286   -1.9019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9938   -1.5854   -3.3782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9542   -0.3035   -4.1359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3507   -0.7027   -4.7645 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1934    1.0528   -4.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8952    3.3434   -0.6677 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9555    0.4805   -0.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6463    2.0446   -1.2226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9764    1.6108    0.4423 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2523    3.1878    0.0786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014    1.4944    2.0345 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0047    0.5344    1.7074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2356    1.7511    3.1402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7043    0.8634    3.2471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8138    2.4748    3.9221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3823    3.9039    1.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4768    5.0458    1.5451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6539    7.1851    1.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 22  1  6
  7 20  1  0
 22 23  2  0
  7  6  1  0
 23 24  1  0
 16 18  1  0
 24 51  1  0
  5  6  1  0
 24 25  2  0
 20 19  1  0
  5  4  1  0
 18 19  1  0
  4  2  1  0
 15  8  1  0
  2  1  1  0
  5  9  1  0
  2  3  2  0
  9  8  1  0
 10 11  1  0
  8  7  1  0
 13 14  2  0
 15 16  1  0
 20 21  1  0
 15 13  1  0
  9 34  1  6
  9 10  1  0
 16 17  1  0
 10 12  2  0
  8 33  1  6
 12 13  1  0
 15 39  1  1
  7 32  1  6
  5 31  1  1
 16 40  1  6
 18 44  1  0
 18 45  1  0
 12 38  1  0
 22 49  1  0
 23 50  1  0
  4 29  1  0
  4 30  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
 11 35  1  0
 11 36  1  0
 11 37  1  0
 21 46  1  0
 21 47  1  0
 21 48  1  0
 17 41  1  0
 17 42  1  0
 17 43  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₅

Average Mass

346.4230 Da

Monoisotopic Mass

346.17802 Da

IUPAC Name

(2E)-3-[(1R,3R,4S,8R,9R,12S,13R)-5,9,12-trimethyl-7-oxo-3-(2-oxopropyl)-2,11-dioxatricyclo[6.4.1.0^{4,13}]tridec-5-en-12-yl]prop-2-enal

Traditional Name

(2E)-3-[(1R,3R,4S,8R,9R,12S,13R)-5,9,12-trimethyl-7-oxo-3-(2-oxopropyl)-2,11-dioxatricyclo[6.4.1.0^{4,13}]tridec-5-en-12-yl]prop-2-enal

CAS Registry Number

Not Available

SMILES

[H]C(=O)C(\[H])=C(/[H])[C@@]1(OC([H])([H])[C@]([H])(C([H])([H])[H])[C@@]2([H])C(=O)C([H])=C(C([H])([H])[H])[C@@]3([H])[C@]([H])(O[C@]1([H])[C@@]23[H])C([H])([H])C(=O)C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H26O5/c1-11-8-14(23)16-12(2)10-24-20(4,6-5-7-21)19-18(16)17(11)15(25-19)9-13(3)22/h5-8,12,15-19H,9-10H2,1-4H3/b6-5+/t12-,15+,16-,17-,18-,19+,20-/m0/s1

InChI Key

SPGKLZOENIXNTQ-CXVQPUGHSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pachyclavularia violacea	JEOL database	Sheu, J.-H., et al, Tetrahedron 57, 7639 (2001)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.75	ALOGPS
logP	1.64	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	15.14	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	69.67 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	94.81 m³·mol⁻¹	ChemAxon
Polarizability	37.02 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Sheu, J.-H., et al. (2001). Sheu, J.-H., et al, Tetrahedron 57, 7639 (2001). Tetrahedron.

Showing NP-Card for Secopachyclavulariaenone A (NP0025396)

MOL for NP0025396 (Secopachyclavulariaenone A)

3D MOL for NP0025396 (Secopachyclavulariaenone A)

3D SDF for NP0025396 (Secopachyclavulariaenone A)

3D-SDF for NP0025396 (Secopachyclavulariaenone A)

PDB for NP0025396 (Secopachyclavulariaenone A)

3D PDB for NP0025396 (Secopachyclavulariaenone A)

SMILES for NP0025396 (Secopachyclavulariaenone A)

INCHI for NP0025396 (Secopachyclavulariaenone A)

Structure for NP0025396 (Secopachyclavulariaenone A)

3D Structure for NP0025396 (Secopachyclavulariaenone A)