NP-MRD: Showing NP-Card for desacetylpyramidaglain A (NP0025239)

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Record Information

Version

2.0

Created at

2021-06-19 17:24:56 UTC

Updated at

2021-06-29 23:50:04 UTC

NP-MRD ID

NP0025239

Secondary Accession Numbers

None

Natural Product Identification

Common Name

desacetylpyramidaglain A

Provided By

JEOL Database JEOL Logo

Description

desacetylpyramidaglain A is found in Aglaia forbesii. desacetylpyramidaglain A was first documented in 2008 (Joycharat, N., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119243D          

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M  END

     RDKit          3D

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 20 62  1  0
M  END


  Mrv1652306192119243D          

 88 93  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0025239

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])[C@]2(O[H])C3=C(OC([H])([H])[H])C([H])=C(OC([H])([H])[H])C([H])=C3O[C@@]1(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])[C@]([H])(C1=C([H])C([H])=C([H])C([H])=C1[H])[C@@]2([H])C(=O)N([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])N([H])C(=O)C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C38H40N2O8/c1-45-27-18-16-26(17-19-27)38-31(24-12-6-4-7-13-24)33(35(42)40-21-11-10-20-39-34(41)25-14-8-5-9-15-25)37(44,36(38)43)32-29(47-3)22-28(46-2)23-30(32)48-38/h4-9,12-19,22-23,31,33,36,43-44H,10-11,20-21H2,1-3H3,(H,39,41)(H,40,42)/t31-,33+,36-,37+,38+/m1/s1

> <INCHI_KEY>
XFSOIGVOVJTBKR-SYACSPTMSA-N

> <FORMULA>
C38H40N2O8

> <MOLECULAR_WEIGHT>
652.744

> <EXACT_MASS>
652.278466256

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
88

> <JCHEM_AVERAGE_POLARIZABILITY>
69.29051549126427

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-(4-{[(1R,9R,10S,11R,12R)-1,12-dihydroxy-3,5-dimethoxy-9-(4-methoxyphenyl)-10-phenyl-8-oxatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-trien-11-yl]formamido}butyl)benzamide

> <ALOGPS_LOGP>
4.47

> <JCHEM_LOGP>
3.6182151190000016

> <ALOGPS_LOGS>
-5.19

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.516661171093244

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.090254911644278

> <JCHEM_PKA_STRONGEST_BASIC>
-0.6862313631804225

> <JCHEM_POLAR_SURFACE_AREA>
135.58

> <JCHEM_REFRACTIVITY>
178.93889999999988

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.24e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-(4-{[(1R,9R,10S,11R,12R)-1,12-dihydroxy-3,5-dimethoxy-9-(4-methoxyphenyl)-10-phenyl-8-oxatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-trien-11-yl]formamido}butyl)benzamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 88 93  0  0  0  0  0  0  0  0999 V2000
   -4.0668   -0.3751    7.2708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3196    0.0852    5.9496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2559    0.1133    5.0914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9450   -0.2460    5.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9432   -0.1704    4.4162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2300    0.2595    3.1112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1719    0.3612    2.0187 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1322    1.7910    1.7202 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8953    2.2430    0.9324 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8362    3.5913    0.5801 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8452    4.1439   -0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9221    5.4472   -0.6079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8985    6.3259   -0.1559 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8992    3.3321   -0.6278 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9601    1.9768   -0.2779 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9849    1.1455   -0.6481 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7069    1.5201   -1.8190 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9587    1.4200    0.5333 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9158   -0.0362    0.9807 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1740   -0.7082    1.0258 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2588   -0.1036    2.3795 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9324    0.6919    3.3634 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9093   -0.8691    0.1667 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0927   -0.7210   -1.3323 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2926   -0.1375   -2.0574 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2324   -1.3396   -1.7974 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6409   -1.3473   -3.1869 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1156   -2.5573   -3.9618 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6004   -2.6155   -4.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0821   -1.6316   -5.2485 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1746   -0.2551   -4.8220 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5219    0.7635   -5.6816 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7845    0.5859   -6.8669 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6321    2.1294   -5.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4935    3.0461   -5.7129 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6501    4.3314   -5.1912 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9396    4.7110   -4.0542 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0650    3.8117   -3.4453 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0926    2.5243   -3.9634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4873   -0.4286    0.6847 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4071   -1.6424    0.7290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3829   -1.7866   -0.2719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2349   -2.8919   -0.2891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1202   -3.8747    0.6893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1491   -3.7554    1.6798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2935   -2.6513    1.6969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5564    0.6330    2.8282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5538    0.5550    3.8039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3606    0.2819    7.7891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7141   -1.4118    7.2676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0122   -0.3472    7.8212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6613   -0.5872    6.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0652   -0.4542    4.7098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0059    4.1777    0.9317 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1165    7.3230   -0.5504 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8899    6.3938    0.9369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0801    6.0221   -0.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6750    3.7954   -1.2301 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3169    0.6632   -2.1205 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0335    1.7586   -2.6497 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3853    2.3520   -1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8641   -0.0222    0.9373 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2811   -1.1342    2.7538 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    1.5947    3.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0804   -1.9344    0.3865 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8754   -1.7240   -1.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3736   -0.3978   -3.6528 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7360   -1.3925   -3.1753 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6263   -2.6005   -4.9317 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4057   -3.4659   -3.4183 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3631   -3.6259   -4.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0567   -2.4944   -3.2560 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6130   -1.7734   -6.1959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9798   -1.8272   -5.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310   -0.0622   -3.8295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0493    2.7555   -6.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3249    5.0342   -5.6727 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654    5.7088   -3.6416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4938    4.1107   -2.5625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7922    1.8505   -3.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9432    0.2918   -0.0087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4852   -1.0367   -1.0549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9872   -2.9848   -1.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7853   -4.7339    0.6790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0573   -4.5239    2.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5449   -2.6002    2.4821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8280    0.9889    1.8360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5725    0.8420    3.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
 46 41  1  0
 40 41  1  0
 10  9  2  0
 19 21  1  0
  7 21  1  0
  8  7  1  0
 21 22  1  0
 18 19  1  0
 15 16  1  0
  6  5  2  0
 16 17  1  0
 23 40  1  0
 11 12  1  0
  5  4  1  0
 12 13  1  0
  9 18  1  0
  3  2  1  0
  4  3  2  0
  2  1  1  0
 23 24  1  0
  3 48  1  0
 24 25  2  0
 18 15  2  0
 24 26  1  0
 48 47  2  0
 26 27  1  0
 47  6  1  0
 27 28  1  0
  7  6  1  1
 28 29  1  0
  9  8  1  0
 29 30  1  0
 15 14  1  0
 30 31  1  0
 41 42  2  0
 31 32  1  0
 19 23  1  0
 32 34  1  0
 42 43  1  0
 34 35  2  0
 14 11  2  0
 35 36  1  0
 43 44  2  0
 36 37  2  0
 40  7  1  0
 37 38  1  0
 44 45  1  0
 38 39  2  0
 39 34  1  0
 11 10  1  0
 32 33  2  0
 45 46  2  0
 19 20  1  1
 23 65  1  1
 40 81  1  6
 14 58  1  0
 10 54  1  0
  5 53  1  0
  4 52  1  0
 48 88  1  0
 47 87  1  0
 42 82  1  0
 43 83  1  0
 44 84  1  0
 45 85  1  0
 46 86  1  0
 21 63  1  1
 22 64  1  0
 17 59  1  0
 17 60  1  0
 17 61  1  0
 13 55  1  0
 13 56  1  0
 13 57  1  0
  1 49  1  0
  1 50  1  0
  1 51  1  0
 26 66  1  0
 27 67  1  0
 27 68  1  0
 28 69  1  0
 28 70  1  0
 29 71  1  0
 29 72  1  0
 30 73  1  0
 30 74  1  0
 31 75  1  0
 35 76  1  0
 36 77  1  0
 37 78  1  0
 38 79  1  0
 39 80  1  0
 20 62  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.067  -0.375   7.271  0.00  0.00           C+0
HETATM    2  O   UNK     0      -4.320   0.085   5.950  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.256   0.113   5.091  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.945  -0.246   5.394  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.943  -0.170   4.416  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.230   0.260   3.111  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.172   0.361   2.019  0.00  0.00           C+0
HETATM    8  O   UNK     0      -0.132   1.791   1.720  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.895   2.243   0.932  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.836   3.591   0.580  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.845   4.144  -0.199  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.922   5.447  -0.608  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.899   6.326  -0.156  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.899   3.332  -0.628  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.960   1.977  -0.278  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.985   1.145  -0.648  0.00  0.00           O+0
HETATM   17  C   UNK     0       4.707   1.520  -1.819  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.959   1.420   0.533  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.916  -0.036   0.981  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.174  -0.708   1.026  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.259  -0.104   2.380  0.00  0.00           C+0
HETATM   22  O   UNK     0       1.932   0.692   3.363  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.909  -0.869   0.167  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.093  -0.721  -1.332  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.293  -0.138  -2.057  0.00  0.00           O+0
HETATM   26  N   UNK     0       2.232  -1.340  -1.797  0.00  0.00           N+0
HETATM   27  C   UNK     0       2.641  -1.347  -3.187  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.116  -2.557  -3.962  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.600  -2.615  -4.199  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.082  -1.632  -5.248  0.00  0.00           C+0
HETATM   31  N   UNK     0       0.175  -0.255  -4.822  0.00  0.00           N+0
HETATM   32  C   UNK     0       0.522   0.764  -5.682  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.785   0.586  -6.867  0.00  0.00           O+0
HETATM   34  C   UNK     0       0.632   2.129  -5.094  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.494   3.046  -5.713  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.650   4.331  -5.191  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.940   4.711  -4.054  0.00  0.00           C+0
HETATM   38  C   UNK     0       0.065   3.812  -3.445  0.00  0.00           C+0
HETATM   39  C   UNK     0      -0.093   2.524  -3.963  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.487  -0.429   0.685  0.00  0.00           C+0
HETATM   41  C   UNK     0      -1.407  -1.642   0.729  0.00  0.00           C+0
HETATM   42  C   UNK     0      -2.383  -1.787  -0.272  0.00  0.00           C+0
HETATM   43  C   UNK     0      -3.235  -2.892  -0.289  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.120  -3.875   0.689  0.00  0.00           C+0
HETATM   45  C   UNK     0      -2.149  -3.755   1.680  0.00  0.00           C+0
HETATM   46  C   UNK     0      -1.294  -2.651   1.697  0.00  0.00           C+0
HETATM   47  C   UNK     0      -2.556   0.633   2.828  0.00  0.00           C+0
HETATM   48  C   UNK     0      -3.554   0.555   3.804  0.00  0.00           C+0
HETATM   49  H   UNK     0      -3.361   0.282   7.789  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.714  -1.412   7.268  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.012  -0.347   7.821  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.661  -0.587   6.385  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.065  -0.454   4.710  0.00  0.00           H+0
HETATM   54  H   UNK     0      -0.006   4.178   0.932  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.117   7.323  -0.550  0.00  0.00           H+0
HETATM   56  H   UNK     0       0.890   6.394   0.937  0.00  0.00           H+0
HETATM   57  H   UNK     0      -0.080   6.022  -0.542  0.00  0.00           H+0
HETATM   58  H   UNK     0       3.675   3.795  -1.230  0.00  0.00           H+0
HETATM   59  H   UNK     0       5.317   0.663  -2.120  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.034   1.759  -2.650  0.00  0.00           H+0
HETATM   61  H   UNK     0       5.385   2.352  -1.606  0.00  0.00           H+0
HETATM   62  H   UNK     0       3.864  -0.022   0.937  0.00  0.00           H+0
HETATM   63  H   UNK     0       1.281  -1.134   2.754  0.00  0.00           H+0
HETATM   64  H   UNK     0       1.566   1.595   3.316  0.00  0.00           H+0
HETATM   65  H   UNK     0       1.080  -1.934   0.387  0.00  0.00           H+0
HETATM   66  H   UNK     0       2.875  -1.724  -1.110  0.00  0.00           H+0
HETATM   67  H   UNK     0       2.374  -0.398  -3.653  0.00  0.00           H+0
HETATM   68  H   UNK     0       3.736  -1.393  -3.175  0.00  0.00           H+0
HETATM   69  H   UNK     0       2.626  -2.600  -4.932  0.00  0.00           H+0
HETATM   70  H   UNK     0       2.406  -3.466  -3.418  0.00  0.00           H+0
HETATM   71  H   UNK     0       0.363  -3.626  -4.556  0.00  0.00           H+0
HETATM   72  H   UNK     0       0.057  -2.494  -3.256  0.00  0.00           H+0
HETATM   73  H   UNK     0       0.613  -1.773  -6.196  0.00  0.00           H+0
HETATM   74  H   UNK     0      -0.980  -1.827  -5.434  0.00  0.00           H+0
HETATM   75  H   UNK     0       0.031  -0.062  -3.829  0.00  0.00           H+0
HETATM   76  H   UNK     0       2.049   2.756  -6.602  0.00  0.00           H+0
HETATM   77  H   UNK     0       2.325   5.034  -5.673  0.00  0.00           H+0
HETATM   78  H   UNK     0       1.065   5.709  -3.642  0.00  0.00           H+0
HETATM   79  H   UNK     0      -0.494   4.111  -2.563  0.00  0.00           H+0
HETATM   80  H   UNK     0      -0.792   1.851  -3.478  0.00  0.00           H+0
HETATM   81  H   UNK     0      -0.943   0.292  -0.009  0.00  0.00           H+0
HETATM   82  H   UNK     0      -2.485  -1.037  -1.055  0.00  0.00           H+0
HETATM   83  H   UNK     0      -3.987  -2.985  -1.068  0.00  0.00           H+0
HETATM   84  H   UNK     0      -3.785  -4.734   0.679  0.00  0.00           H+0
HETATM   85  H   UNK     0      -2.057  -4.524   2.443  0.00  0.00           H+0
HETATM   86  H   UNK     0      -0.545  -2.600   2.482  0.00  0.00           H+0
HETATM   87  H   UNK     0      -2.828   0.989   1.836  0.00  0.00           H+0
HETATM   88  H   UNK     0      -4.572   0.842   3.555  0.00  0.00           H+0
CONECT    1    2   49   50   51                                             
CONECT    2    3    1                                                       
CONECT    3    2    4   48                                                  
CONECT    4    5    3   52                                                  
CONECT    5    6    4   53                                                  
CONECT    6    5   47    7                                                  
CONECT    7   21    8    6   40                                             
CONECT    8    7    9                                                       
CONECT    9   10   18    8                                                  
CONECT   10    9   11   54                                                  
CONECT   11   12   14   10                                                  
CONECT   12   11   13                                                       
CONECT   13   12   55   56   57                                             
CONECT   14   15   11   58                                                  
CONECT   15   16   18   14                                                  
CONECT   16   15   17                                                       
CONECT   17   16   59   60   61                                             
CONECT   18   19    9   15                                                  
CONECT   19   21   18   23   20                                             
CONECT   20   19   62                                                       
CONECT   21   19    7   22   63                                             
CONECT   22   21   64                                                       
CONECT   23   40   24   19   65                                             
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   66                                                  
CONECT   27   26   28   67   68                                             
CONECT   28   27   29   69   70                                             
CONECT   29   28   30   71   72                                             
CONECT   30   29   31   73   74                                             
CONECT   31   30   32   75                                                  
CONECT   32   31   34   33                                                  
CONECT   33   32                                                            
CONECT   34   32   35   39                                                  
CONECT   35   34   36   76                                                  
CONECT   36   35   37   77                                                  
CONECT   37   36   38   78                                                  
CONECT   38   37   39   79                                                  
CONECT   39   38   34   80                                                  
CONECT   40   41   23    7   81                                             
CONECT   41   46   40   42                                                  
CONECT   42   41   43   82                                                  
CONECT   43   42   44   83                                                  
CONECT   44   43   45   84                                                  
CONECT   45   44   46   85                                                  
CONECT   46   41   45   86                                                  
CONECT   47   48    6   87                                                  
CONECT   48    3   47   88                                                  
CONECT   49    1                                                            
CONECT   50    1                                                            
CONECT   51    1                                                            
CONECT   52    4                                                            
CONECT   53    5                                                            
CONECT   54   10                                                            
CONECT   55   13                                                            
CONECT   56   13                                                            
CONECT   57   13                                                            
CONECT   58   14                                                            
CONECT   59   17                                                            
CONECT   60   17                                                            
CONECT   61   17                                                            
CONECT   62   20                                                            
CONECT   63   21                                                            
CONECT   64   22                                                            
CONECT   65   23                                                            
CONECT   66   26                                                            
CONECT   67   27                                                            
CONECT   68   27                                                            
CONECT   69   28                                                            
CONECT   70   28                                                            
CONECT   71   29                                                            
CONECT   72   29                                                            
CONECT   73   30                                                            
CONECT   74   30                                                            
CONECT   75   31                                                            
CONECT   76   35                                                            
CONECT   77   36                                                            
CONECT   78   37                                                            
CONECT   79   38                                                            
CONECT   80   39                                                            
CONECT   81   40                                                            
CONECT   82   42                                                            
CONECT   83   43                                                            
CONECT   84   44                                                            
CONECT   85   45                                                            
CONECT   86   46                                                            
CONECT   87   47                                                            
CONECT   88   48                                                            
MASTER        0    0    0    0    0    0    0    0   88    0  186    0
END

RDKit          3D

88 93  0  0  0  0  0  0  0  0999 V2000
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   -4.3196    0.0852    5.9496 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9450   -0.2460    5.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₈H₄₀N₂O₈

Average Mass

652.7440 Da

Monoisotopic Mass

652.27847 Da

IUPAC Name

N-(4-{[(1R,9R,10S,11R,12R)-1,12-dihydroxy-3,5-dimethoxy-9-(4-methoxyphenyl)-10-phenyl-8-oxatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-trien-11-yl]formamido}butyl)benzamide

Traditional Name

N-(4-{[(1R,9R,10S,11R,12R)-1,12-dihydroxy-3,5-dimethoxy-9-(4-methoxyphenyl)-10-phenyl-8-oxatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-trien-11-yl]formamido}butyl)benzamide

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])[C@]2(O[H])C3=C(OC([H])([H])[H])C([H])=C(OC([H])([H])[H])C([H])=C3O[C@@]1(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])[C@]([H])(C1=C([H])C([H])=C([H])C([H])=C1[H])[C@@]2([H])C(=O)N([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])N([H])C(=O)C1=C([H])C([H])=C([H])C([H])=C1[H]

InChI Identifier

InChI=1S/C38H40N2O8/c1-45-27-18-16-26(17-19-27)38-31(24-12-6-4-7-13-24)33(35(42)40-21-11-10-20-39-34(41)25-14-8-5-9-15-25)37(44,36(38)43)32-29(47-3)22-28(46-2)23-30(32)48-38/h4-9,12-19,22-23,31,33,36,43-44H,10-11,20-21H2,1-3H3,(H,39,41)(H,40,42)/t31-,33+,36-,37+,38+/m1/s1

InChI Key

XFSOIGVOVJTBKR-SYACSPTMSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aglaia forbesii	JEOL database	Joycharat, N., et al, Phytochem. 69, 206 (2008)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.47	ALOGPS
logP	3.62	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	12.09	ChemAxon
pKa (Strongest Basic)	-0.69	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	135.58 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	178.94 m³·mol⁻¹	ChemAxon
Polarizability	69.29 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

Joycharat, N., et al. (2008). Joycharat, N., et al, Phytochem. 69, 206 (2008). Phytochem..

Showing NP-Card for desacetylpyramidaglain A (NP0025239)

MOL for NP0025239 (desacetylpyramidaglain A)

3D MOL for NP0025239 (desacetylpyramidaglain A)

3D SDF for NP0025239 (desacetylpyramidaglain A)

3D-SDF for NP0025239 (desacetylpyramidaglain A)

PDB for NP0025239 (desacetylpyramidaglain A)

3D PDB for NP0025239 (desacetylpyramidaglain A)

SMILES for NP0025239 (desacetylpyramidaglain A)

INCHI for NP0025239 (desacetylpyramidaglain A)

Structure for NP0025239 (desacetylpyramidaglain A)

3D Structure for NP0025239 (desacetylpyramidaglain A)