NP-MRD: Showing NP-Card for caribenol B (NP0025214)

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Record Information

Version

2.0

Created at

2021-06-19 17:23:52 UTC

Updated at

2021-06-29 23:50:00 UTC

NP-MRD ID

NP0025214

Secondary Accession Numbers

None

Natural Product Identification

Common Name

caribenol B

Provided By

JEOL Database JEOL Logo

Description

Caribenol B is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. caribenol B is found in Pseudopterogorgia elisabethae. caribenol B was first documented in 2017 (PMID: 28218534). Based on a literature review very few articles have been published on caribenol B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119233D          

 50 52  0  0  0  0            999 V2000
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   -2.9054    2.2108    0.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1902    0.4196    2.6286 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1018   -0.9260    3.3774 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306192119233D          

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 16 18  1  0  0  0  0
 18 21  1  0  0  0  0
 21 14  1  0  0  0  0
  5 16  1  0  0  0  0
 21 22  2  0  0  0  0
  9 10  1  0  0  0  0
  7  8  1  0  0  0  0
 14 12  1  0  0  0  0
  5  4  1  0  0  0  0
 12 11  1  0  0  0  0
 18 19  1  0  0  0  0
 11 10  1  0  0  0  0
 12 13  1  0  0  0  0
 14 15  2  0  0  0  0
  9 37  1  6  0  0  0
  9  7  1  0  0  0  0
 18 20  1  6  0  0  0
  9 15  1  0  0  0  0
 16 17  1  6  0  0  0
  6  5  1  0  0  0  0
  4  2  2  3  0  0  0
  2  1  1  0  0  0  0
  6  7  1  0  0  0  0
  2  3  1  0  0  0  0
  6 31  1  0  0  0  0
  6 32  1  0  0  0  0
  5 30  1  1  0  0  0
  7 33  1  1  0  0  0
 12 42  1  1  0  0  0
 11 40  1  0  0  0  0
 11 41  1  0  0  0  0
 10 38  1  0  0  0  0
 10 39  1  0  0  0  0
  8 34  1  0  0  0  0
  8 35  1  0  0  0  0
  8 36  1  0  0  0  0
  4 29  1  0  0  0  0
 19 47  1  0  0  0  0
 19 48  1  0  0  0  0
 19 49  1  0  0  0  0
 13 43  1  0  0  0  0
 13 44  1  0  0  0  0
 13 45  1  0  0  0  0
 20 50  1  0  0  0  0
 17 46  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  3 26  1  0  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0025214

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1(C(=O)C2=C3[C@]([H])(C([H])([H])C([H])([H])[C@]2([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@]13O[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H28O3/c1-10(2)8-13-9-12(4)14-7-6-11(3)15-16(14)19(13,22)18(5,21)17(15)20/h8,11-14,21-22H,6-7,9H2,1-5H3/t11-,12-,13+,14+,18+,19+/m0/s1

> <INCHI_KEY>
UZKZXPWGNRCNCM-NDNLJYSTSA-N

> <FORMULA>
C19H28O3

> <MOLECULAR_WEIGHT>
304.43

> <EXACT_MASS>
304.203844762

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
35.28567631877624

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,2aR,3S,5S,5aR,8S)-2,2a-dihydroxy-2,5,8-trimethyl-3-(2-methylprop-1-en-1-yl)-1,2,2a,3,4,5,5a,6,7,8-decahydroacenaphthylen-1-one

> <ALOGPS_LOGP>
2.71

> <JCHEM_LOGP>
3.084456317

> <ALOGPS_LOGS>
-3.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.517001953660905

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.981430723355569

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8142872521106677

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
88.26959999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.45e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,2aR,3S,5S,5aR,8S)-2,2a-dihydroxy-2,5,8-trimethyl-3-(2-methylprop-1-en-1-yl)-4,5,5a,6,7,8-hexahydro-3H-acenaphthylen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 50 52  0  0  0  0  0  0  0  0999 V2000
   -4.2801    1.6068   -0.0860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9054    2.2108    0.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8103    3.5997   -0.5711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8210    1.6191    0.5472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7120    0.2405    1.1833 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1902    0.4196    2.6286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1018   -0.9260    3.3774 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6239   -0.6820    4.8122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1937   -1.9341    2.6288 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2637   -3.3411    3.2689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3197   -4.4249    2.3558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4192   -4.5102    1.0011 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3965   -5.3797    0.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6779   -3.1364    0.4837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5628   -1.9948    1.1723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7902   -0.7288    0.3867 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5254   -0.1684    0.2468 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594   -1.2459   -0.9752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6827   -0.6846   -2.2197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7770   -1.0811   -1.1068 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1289   -2.7489   -0.8598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3831   -3.5518   -1.7494 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3688    0.6333    0.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5633    1.4815   -1.1363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0124    2.2676    0.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7991    4.0136   -0.4981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0877    3.5877   -1.6303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4861    4.2787   -0.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8959    2.1962    0.5669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7029   -0.2176    1.2716 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2044    0.9044    2.6239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8653    1.0910    3.1764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1188   -1.3395    3.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6724   -1.5968    5.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2540    0.0633    5.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4083   -0.3165    4.8292 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465   -1.5844    2.6872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3043   -3.6001    3.5046 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2867   -3.3449    4.2168 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3855   -4.2134    2.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2658   -5.3960    2.8631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3890   -4.9970    1.1667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6408   -6.3422    0.5053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1607   -5.5969   -0.8744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367   -4.8930   -0.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4383    0.6566   -0.2600 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3877   -0.9132   -2.2453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1295   -1.1013   -3.1301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8161    0.4009   -2.2775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0501   -1.6358   -1.8633 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  0
 16 18  1  0
 18 21  1  0
 21 14  1  0
  5 16  1  0
 21 22  2  0
  9 10  1  0
  7  8  1  0
 14 12  1  0
  5  4  1  0
 12 11  1  0
 18 19  1  0
 11 10  1  0
 12 13  1  0
 14 15  2  0
  9 37  1  6
  9  7  1  0
 18 20  1  6
  9 15  1  0
 16 17  1  6
  6  5  1  0
  4  2  2  3
  2  1  1  0
  6  7  1  0
  2  3  1  0
  6 31  1  0
  6 32  1  0
  5 30  1  1
  7 33  1  1
 12 42  1  1
 11 40  1  0
 11 41  1  0
 10 38  1  0
 10 39  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  4 29  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 13 43  1  0
 13 44  1  0
 13 45  1  0
 20 50  1  0
 17 46  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.280   1.607  -0.086  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.905   2.211   0.008  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.810   3.600  -0.571  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.821   1.619   0.547  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.712   0.241   1.183  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.190   0.420   2.629  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.102  -0.926   3.377  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.624  -0.682   4.812  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.194  -1.934   2.629  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.264  -3.341   3.269  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.320  -4.425   2.356  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.419  -4.510   1.001  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.397  -5.380   0.042  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.678  -3.136   0.484  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.563  -1.995   1.172  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.790  -0.729   0.387  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.525  -0.168   0.247  0.00  0.00           O+0
HETATM   18  C   UNK     0      -1.359  -1.246  -0.975  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.683  -0.685  -2.220  0.00  0.00           C+0
HETATM   20  O   UNK     0      -2.777  -1.081  -1.107  0.00  0.00           O+0
HETATM   21  C   UNK     0      -1.129  -2.749  -0.860  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.383  -3.552  -1.749  0.00  0.00           O+0
HETATM   23  H   UNK     0      -4.369   0.633   0.399  0.00  0.00           H+0
HETATM   24  H   UNK     0      -4.563   1.482  -1.136  0.00  0.00           H+0
HETATM   25  H   UNK     0      -5.012   2.268   0.391  0.00  0.00           H+0
HETATM   26  H   UNK     0      -1.799   4.014  -0.498  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.088   3.588  -1.630  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.486   4.279  -0.041  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.896   2.196   0.567  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.703  -0.218   1.272  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.204   0.904   2.624  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.865   1.091   3.176  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.119  -1.339   3.434  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.672  -1.597   5.410  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.254   0.063   5.310  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.408  -0.317   4.829  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.847  -1.584   2.687  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.304  -3.600   3.505  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.287  -3.345   4.217  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.385  -4.213   2.195  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.266  -5.396   2.863  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.389  -4.997   1.167  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.641  -6.342   0.505  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.161  -5.597  -0.874  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.337  -4.893  -0.241  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.438   0.657  -0.260  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.388  -0.913  -2.245  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.129  -1.101  -3.130  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.816   0.401  -2.277  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.050  -1.636  -1.863  0.00  0.00           H+0
CONECT    1    2   23   24   25                                             
CONECT    2    4    1    3                                                  
CONECT    3    2   26   27   28                                             
CONECT    4    5    2   29                                                  
CONECT    5   16    4    6   30                                             
CONECT    6    5    7   31   32                                             
CONECT    7    8    9    6   33                                             
CONECT    8    7   34   35   36                                             
CONECT    9   10   37    7   15                                             
CONECT   10    9   11   38   39                                             
CONECT   11   12   10   40   41                                             
CONECT   12   14   11   13   42                                             
CONECT   13   12   43   44   45                                             
CONECT   14   21   12   15                                                  
CONECT   15   16   14    9                                                  
CONECT   16   15   18    5   17                                             
CONECT   17   16   46                                                       
CONECT   18   16   21   19   20                                             
CONECT   19   18   47   48   49                                             
CONECT   20   18   50                                                       
CONECT   21   18   14   22                                                  
CONECT   22   21                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    3                                                            
CONECT   27    3                                                            
CONECT   28    3                                                            
CONECT   29    4                                                            
CONECT   30    5                                                            
CONECT   31    6                                                            
CONECT   32    6                                                            
CONECT   33    7                                                            
CONECT   34    8                                                            
CONECT   35    8                                                            
CONECT   36    8                                                            
CONECT   37    9                                                            
CONECT   38   10                                                            
CONECT   39   10                                                            
CONECT   40   11                                                            
CONECT   41   11                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   13                                                            
CONECT   45   13                                                            
CONECT   46   17                                                            
CONECT   47   19                                                            
CONECT   48   19                                                            
CONECT   49   19                                                            
CONECT   50   20                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  104    0
END

RDKit          3D

50 52  0  0  0  0  0  0  0  0999 V2000
   -4.2801    1.6068   -0.0860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9054    2.2108    0.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8103    3.5997   -0.5711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8210    1.6191    0.5472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7120    0.2405    1.1833 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1902    0.4196    2.6286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1018   -0.9260    3.3774 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6239   -0.6820    4.8122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1937   -1.9341    2.6288 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2637   -3.3411    3.2689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3197   -4.4249    2.3558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4192   -4.5102    1.0011 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3965   -5.3797    0.0421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6779   -3.1364    0.4837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5628   -1.9948    1.1723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7902   -0.7288    0.3867 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5254   -0.1684    0.2468 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594   -1.2459   -0.9752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6827   -0.6846   -2.2197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7770   -1.0811   -1.1068 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1289   -2.7489   -0.8598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3831   -3.5518   -1.7494 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3688    0.6333    0.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5633    1.4815   -1.1363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0124    2.2676    0.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7991    4.0136   -0.4981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0877    3.5877   -1.6303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4861    4.2787   -0.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8959    2.1962    0.5669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7029   -0.2176    1.2716 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2044    0.9044    2.6239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8653    1.0910    3.1764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1188   -1.3395    3.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6724   -1.5968    5.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2540    0.0633    5.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4083   -0.3165    4.8292 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465   -1.5844    2.6872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3043   -3.6001    3.5046 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2867   -3.3449    4.2168 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3855   -4.2134    2.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2658   -5.3960    2.8631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3890   -4.9970    1.1667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6408   -6.3422    0.5053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1607   -5.5969   -0.8744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367   -4.8930   -0.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4383    0.6566   -0.2600 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3877   -0.9132   -2.2453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1295   -1.1013   -3.1301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8161    0.4009   -2.2775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0501   -1.6358   -1.8633 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  0
 16 18  1  0
 18 21  1  0
 21 14  1  0
  5 16  1  0
 21 22  2  0
  9 10  1  0
  7  8  1  0
 14 12  1  0
  5  4  1  0
 12 11  1  0
 18 19  1  0
 11 10  1  0
 12 13  1  0
 14 15  2  0
  9 37  1  6
  9  7  1  0
 18 20  1  6
  9 15  1  0
 16 17  1  6
  6  5  1  0
  4  2  2  3
  2  1  1  0
  6  7  1  0
  2  3  1  0
  6 31  1  0
  6 32  1  0
  5 30  1  1
  7 33  1  1
 12 42  1  1
 11 40  1  0
 11 41  1  0
 10 38  1  0
 10 39  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  4 29  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 13 43  1  0
 13 44  1  0
 13 45  1  0
 20 50  1  0
 17 46  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
M  END

View in JSmol View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₁₉H₂₈O₃

Average Mass

304.4300 Da

Monoisotopic Mass

304.20384 Da

IUPAC Name

(2S,2aR,3S,5S,5aR,8S)-2,2a-dihydroxy-2,5,8-trimethyl-3-(2-methylprop-1-en-1-yl)-1,2,2a,3,4,5,5a,6,7,8-decahydroacenaphthylen-1-one

Traditional Name

(2S,2aR,3S,5S,5aR,8S)-2,2a-dihydroxy-2,5,8-trimethyl-3-(2-methylprop-1-en-1-yl)-4,5,5a,6,7,8-hexahydro-3H-acenaphthylen-1-one

CAS Registry Number

Not Available

SMILES

[H]O[C@@]1(C(=O)C2=C3[C@]([H])(C([H])([H])C([H])([H])[C@]2([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])=C(C([H])([H])[H])C([H])([H])[H])[C@]13O[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C19H28O3/c1-10(2)8-13-9-12(4)14-7-6-11(3)15-16(14)19(13,22)18(5,21)17(15)20/h8,11-14,21-22H,6-7,9H2,1-5H3/t11-,12-,13+,14+,18+,19+/m0/s1

InChI Key

UZKZXPWGNRCNCM-NDNLJYSTSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Antillogorgia elisabethae	JEOL database	Wei, X., et al, J. Org. Chem. 72, 7386 (2007)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.71	ALOGPS
logP	3.08	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	11.98	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	88.27 m³·mol⁻¹	ChemAxon
Polarizability	35.29 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23076462

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

65581

Good Scents ID

Not Available

References

General References

Hao HD, Trauner D: Furans as Versatile Synthons: Total Syntheses of Caribenol A and Caribenol B. J Am Chem Soc. 2017 Mar 22;139(11):4117-4122. doi: 10.1021/jacs.7b00234. Epub 2017 Mar 10. [PubMed:28218534 ]
Wei, X., et al. (2007). Wei, X., et al, J. Org. Chem. 72, 7386 (2007). J. Org. Chem..

Showing NP-Card for caribenol B (NP0025214)

MOL for NP0025214 (caribenol B)

3D MOL for NP0025214 (caribenol B)

3D SDF for NP0025214 (caribenol B)

3D-SDF for NP0025214 (caribenol B)

PDB for NP0025214 (caribenol B)

3D PDB for NP0025214 (caribenol B)

SMILES for NP0025214 (caribenol B)

INCHI for NP0025214 (caribenol B)

Structure for NP0025214 (caribenol B)

3D Structure for NP0025214 (caribenol B)