Np mrd loader

Record Information
Version2.0
Created at2021-06-19 16:58:21 UTC
Updated at2021-06-29 23:49:07 UTC
NP-MRD IDNP0024650
Secondary Accession NumbersNone
Natural Product Identification
Common NamePedilstatin
Provided ByJEOL DatabaseJEOL Logo
DescriptionPedilstatin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Pedilstatin is found in Pedilanthus and Pedilanthus sp.. Pedilstatin was first documented in 2002 (PMID: 12350143). Based on a literature review very few articles have been published on Pedilstatin.
Structure
Thumb
Synonyms
ValueSource
12-O-2Z,4E-Octadienoyl-4-deoxyphorbol 13-acetateChEBI
13-O-Acetyl-12-O-(2'z,4'e-octadienoyl)-4alpha-deoxyphorbolChEBI
4-Deoxy-4alpha-phorbol 13-acetate 12-(2Z,4E)-octa-2,4-dienoateChEBI
12-O-2Z,4E-Octadienoyl-4-deoxyphorbol 13-acetic acidGenerator
13-O-Acetyl-12-O-(2'z,4'e-octadienoyl)-4a-deoxyphorbolGenerator
13-O-Acetyl-12-O-(2'z,4'e-octadienoyl)-4α-deoxyphorbolGenerator
4-Deoxy-4a-phorbol 13-acetate 12-(2Z,4E)-octa-2,4-dienoateGenerator
4-Deoxy-4a-phorbol 13-acetic acid 12-(2Z,4E)-octa-2,4-dienoic acidGenerator
4-Deoxy-4alpha-phorbol 13-acetic acid 12-(2Z,4E)-octa-2,4-dienoic acidGenerator
4-Deoxy-4α-phorbol 13-acetate 12-(2Z,4E)-octa-2,4-dienoateGenerator
4-Deoxy-4α-phorbol 13-acetic acid 12-(2Z,4E)-octa-2,4-dienoic acidGenerator
Chemical FormulaC30H40O7
Average Mass512.6430 Da
Monoisotopic Mass512.27740 Da
IUPAC Name(1R,2R,6R,10S,11R,13S,14R,15R)-13-(acetyloxy)-1-hydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-14-yl (2Z,4E)-octa-2,4-dienoate
Traditional Name(1R,2R,6R,10S,11R,13S,14R,15R)-13-(acetyloxy)-1-hydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxotetracyclo[8.5.0.0^{2,6}.0^{11,13}]pentadeca-3,8-dien-14-yl (2Z,4E)-octa-2,4-dienoate
CAS Registry NumberNot Available
SMILES
[H]OC([H])([H])C1=C([H])[C@@]2([H])[C@@]3([H])[C@@](OC(=O)C([H])([H])[H])([C@]([H])(OC(=O)C(\[H])=C(\[H])/C(/[H])=C(\[H])C([H])([H])C([H])([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])[C@]2(O[H])[C@]2([H])C([H])=C(C(=O)[C@]2([H])C1([H])[H])C([H])([H])[H])C3(C([H])([H])[H])C([H])([H])[H]
InChI Identifier
InChI=1S/C30H40O7/c1-7-8-9-10-11-12-24(33)36-27-18(3)29(35)22-13-17(2)25(34)21(22)14-20(16-31)15-23(29)26-28(5,6)30(26,27)37-19(4)32/h9-13,15,18,21-23,26-27,31,35H,7-8,14,16H2,1-6H3/b10-9+,12-11-/t18-,21-,22-,23+,26-,27-,29+,30-/m1/s1
InChI KeyALKHEZOKTHCOBM-GTBZSHDQSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Euphorbia tirucalliKNApSAcK Database
PedilanthusJEOL database
    • Pettit, G. R., et al, J. Nat. Prod. 65, 1262 (2002)
Pedilanthus sp.Plant
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.79ALOGPS
logP3.76ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)13.92ChemAxon
pKa (Strongest Basic)-1.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area110.13 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity142.47 m³·mol⁻¹ChemAxon
Polarizability56.08 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00003459
Chemspider ID558784
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound643665
PDB IDNot Available
ChEBI ID743
Good Scents IDNot Available
References
General References
  1. Pettit GR, Ducki S, Tan R, Gardella RS, McMahon JB, Boyd MR, Pettit GR 3rd, Blumberg PM, Lewin NE, Doubek DL, Tackett LP, Williams MD: Isolation and structure of pedilstatin from a republic of maldives Pedilanthus sp. J Nat Prod. 2002 Sep;65(9):1262-5. doi: 10.1021/np020115b. [PubMed:12350143 ]
  2. Pettit, G. R., et al. (2002). Pettit, G. R., et al, J. Nat. Prod. 65, 1262 (2002). J. Nat. Prod..