NP-MRD: Showing NP-Card for Dihydromadolin K (NP0024579)

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Record Information

Version

2.0

Created at

2021-06-19 16:55:26 UTC

Updated at

2021-06-29 23:49:00 UTC

NP-MRD ID

NP0024579

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dihydromadolin K

Provided By

JEOL Database JEOL Logo

Description

Dihydromadolin K belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups. Dihydromadolin K is found in Guatteria guianensis and Guatteria multivenia. Dihydromadolin K was first documented in 2002 (Zhang, Z., et al.). Based on a literature review very few articles have been published on Dihydromadolin K.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192118553D          

 41 42  0  0  0  0            999 V2000
    2.4777    2.7177   -1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0662    2.5037   -1.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0356    3.1486   -1.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166    3.1138   -1.2000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2041    1.9358   -1.7936 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4415    0.7940   -0.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5130    1.0290    0.2171 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7734    1.1324   -0.4272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7624   -0.3730   -0.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6989   -0.7387   -1.7901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7503   -0.4621   -1.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2681    0.0863   -0.1440 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9108    1.5530    0.1416 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2589   -1.9036   -1.5736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1276   -2.7933   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6993   -2.6668   -2.8071 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0288   -3.1347   -2.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.0857   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9088    1.7845   -1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5305    3.4527   -2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2442    3.8031   -2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5130    3.1717   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    4.0450   -1.5714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7224    1.5813   -2.7122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1850    2.3046   -2.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3287    1.9528    0.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5723    0.2150    0.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8454    0.3662   -1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0398   -1.1328   -0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9912   -0.5714   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3454   -0.0681   -2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611   -0.0145   -0.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330   -0.5053    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1059    1.5863    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5411    1.9095    0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2538   -2.2792    0.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5576   -3.6211   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -3.2184   -0.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6792   -2.0445   -3.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0481   -3.5292   -2.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5654   -2.3608   -2.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 10  1  0  0  0  0
 11 14  1  0  0  0  0
 13  2  1  0  0  0  0
  5  6  1  0  0  0  0
  3  2  2  0  0  0  0
  2  1  1  0  0  0  0
 11 12  1  0  0  0  0
  6  7  1  0  0  0  0
 12 13  1  0  0  0  0
  7  8  1  0  0  0  0
  5  4  1  0  0  0  0
 14 15  1  1  0  0  0
  6  9  2  0  0  0  0
 14 16  1  0  0  0  0
  9 10  1  0  0  0  0
 11 31  1  6  0  0  0
  3  4  1  0  0  0  0
 10 30  1  6  0  0  0
 10 11  1  0  0  0  0
 16 17  1  0  0  0  0
  3 21  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  0  0  0  0
 13 35  1  0  0  0  0
  5 24  1  0  0  0  0
  5 25  1  0  0  0  0
  9 29  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  8 28  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 15 38  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
 17 41  1  0  0  0  0
M  END

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
    2.4777    2.7177   -1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0662    2.5037   -1.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0356    3.1486   -1.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166    3.1138   -1.2000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2041    1.9358   -1.7936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4415    0.7940   -0.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5130    1.0290    0.2171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7734    1.1324   -0.4272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7624   -0.3730   -0.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6989   -0.7387   -1.7901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7503   -0.4621   -1.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2681    0.0863   -0.1440 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9108    1.5530    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2589   -1.9036   -1.5736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1276   -2.7933   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6993   -2.6668   -2.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0288   -3.1347   -2.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.0857   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9088    1.7845   -1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5305    3.4527   -2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2442    3.8031   -2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5130    3.1717   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    4.0450   -1.5714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7224    1.5813   -2.7122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1850    2.3046   -2.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3287    1.9528    0.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5723    0.2150    0.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8454    0.3662   -1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0398   -1.1328   -0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9912   -0.5714   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3454   -0.0681   -2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611   -0.0145   -0.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330   -0.5053    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1059    1.5863    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5411    1.9095    0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2538   -2.2792    0.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5576   -3.6211   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -3.2184   -0.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6792   -2.0445   -3.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0481   -3.5292   -2.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5654   -2.3608   -2.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 10  1  0
 11 14  1  0
 13  2  1  0
  5  6  1  0
  3  2  2  0
  2  1  1  0
 11 12  1  0
  6  7  1  0
 12 13  1  0
  7  8  1  0
  5  4  1  0
 14 15  1  1
  6  9  2  0
 14 16  1  0
  9 10  1  0
 11 31  1  6
  3  4  1  0
 10 30  1  6
 10 11  1  0
 16 17  1  0
  3 21  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
  5 24  1  0
  5 25  1  0
  9 29  1  0
  4 22  1  0
  4 23  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 16 40  1  0
 17 41  1  0
M  END


  Mrv1652306192118553D          

 41 42  0  0  0  0            999 V2000
    2.4777    2.7177   -1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0662    2.5037   -1.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0356    3.1486   -1.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166    3.1138   -1.2000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2041    1.9358   -1.7936 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4415    0.7940   -0.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5130    1.0290    0.2171 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7734    1.1324   -0.4272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7624   -0.3730   -0.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6989   -0.7387   -1.7901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7503   -0.4621   -1.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2681    0.0863   -0.1440 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9108    1.5530    0.1416 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2589   -1.9036   -1.5736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1276   -2.7933   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6993   -2.6668   -2.8071 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0288   -3.1347   -2.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.0857   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9088    1.7845   -1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5305    3.4527   -2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2442    3.8031   -2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5130    3.1717   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    4.0450   -1.5714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7224    1.5813   -2.7122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1850    2.3046   -2.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3287    1.9528    0.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5723    0.2150    0.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8454    0.3662   -1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0398   -1.1328   -0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9912   -0.5714   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3454   -0.0681   -2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611   -0.0145   -0.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330   -0.5053    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1059    1.5863    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5411    1.9095    0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2538   -2.2792    0.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5576   -3.6211   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -3.2184   -0.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6792   -2.0445   -3.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0481   -3.5292   -2.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5654   -2.3608   -2.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 10  1  0  0  0  0
 11 14  1  0  0  0  0
 13  2  1  0  0  0  0
  5  6  1  0  0  0  0
  3  2  2  0  0  0  0
  2  1  1  0  0  0  0
 11 12  1  0  0  0  0
  6  7  1  0  0  0  0
 12 13  1  0  0  0  0
  7  8  1  0  0  0  0
  5  4  1  0  0  0  0
 14 15  1  1  0  0  0
  6  9  2  0  0  0  0
 14 16  1  0  0  0  0
  9 10  1  0  0  0  0
 11 31  1  6  0  0  0
  3  4  1  0  0  0  0
 10 30  1  6  0  0  0
 10 11  1  0  0  0  0
 16 17  1  0  0  0  0
  3 21  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  0  0  0  0
 13 35  1  0  0  0  0
  5 24  1  0  0  0  0
  5 25  1  0  0  0  0
  9 29  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  8 28  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 15 38  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
 17 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0024579

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C1=C([H])/[C@@]2([H])[C@@]([H])(C([H])([H])C([H])([H])\C(=C([H])/C([H])([H])C\1([H])[H])C([H])([H])[H])[C@]2(C([H])([H])[H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-11-4-3-5-12(9-16)8-14-13(7-6-11)15(14,2)10-17/h4,8,13-14,16-17H,3,5-7,9-10H2,1-2H3/b11-4-,12-8+/t13-,14+,15+/m1/s1

> <INCHI_KEY>
DCQFUTANYUEHLR-TZCYELPTSA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.355

> <EXACT_MASS>
236.177630013

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
27.599504834192587

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,2E,6Z,10R,11S)-3-(hydroxymethyl)-7,11-dimethylbicyclo[8.1.0]undeca-2,6-dien-11-yl]methanol

> <ALOGPS_LOGP>
2.49

> <JCHEM_LOGP>
1.8998334080000008

> <ALOGPS_LOGS>
-3.01

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.12574647289593

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.945825972835866

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3160807494612854

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
72.0743

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.29e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,2E,6Z,10R,11S)-3-(hydroxymethyl)-7,11-dimethylbicyclo[8.1.0]undeca-2,6-dien-11-yl]methanol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
    2.4777    2.7177   -1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0662    2.5037   -1.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0356    3.1486   -1.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166    3.1138   -1.2000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2041    1.9358   -1.7936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4415    0.7940   -0.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5130    1.0290    0.2171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7734    1.1324   -0.4272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7624   -0.3730   -0.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6989   -0.7387   -1.7901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7503   -0.4621   -1.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2681    0.0863   -0.1440 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9108    1.5530    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2589   -1.9036   -1.5736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1276   -2.7933   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6993   -2.6668   -2.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0288   -3.1347   -2.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.0857   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9088    1.7845   -1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5305    3.4527   -2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2442    3.8031   -2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5130    3.1717   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    4.0450   -1.5714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7224    1.5813   -2.7122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1850    2.3046   -2.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3287    1.9528    0.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5723    0.2150    0.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8454    0.3662   -1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0398   -1.1328   -0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9912   -0.5714   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3454   -0.0681   -2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611   -0.0145   -0.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330   -0.5053    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1059    1.5863    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5411    1.9095    0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2538   -2.2792    0.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5576   -3.6211   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -3.2184   -0.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6792   -2.0445   -3.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0481   -3.5292   -2.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5654   -2.3608   -2.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 10  1  0
 11 14  1  0
 13  2  1  0
  5  6  1  0
  3  2  2  0
  2  1  1  0
 11 12  1  0
  6  7  1  0
 12 13  1  0
  7  8  1  0
  5  4  1  0
 14 15  1  1
  6  9  2  0
 14 16  1  0
  9 10  1  0
 11 31  1  6
  3  4  1  0
 10 30  1  6
 10 11  1  0
 16 17  1  0
  3 21  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
  5 24  1  0
  5 25  1  0
  9 29  1  0
  4 22  1  0
  4 23  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 16 40  1  0
 17 41  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0       2.478   2.718  -1.507  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.066   2.504  -1.024  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.036   3.149  -1.607  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.417   3.114  -1.200  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.204   1.936  -1.794  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.442   0.794  -0.817  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.513   1.029   0.217  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.773   1.132  -0.427  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.762  -0.373  -0.850  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.699  -0.739  -1.790  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.750  -0.462  -1.448  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.268   0.086  -0.144  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.911   1.553   0.142  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.259  -1.904  -1.574  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.128  -2.793  -0.358  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.699  -2.667  -2.807  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.029  -3.135  -2.626  0.00  0.00           O+0
HETATM   18  H   UNK     0       3.104   3.086  -0.688  0.00  0.00           H+0
HETATM   19  H   UNK     0       2.909   1.785  -1.881  0.00  0.00           H+0
HETATM   20  H   UNK     0       2.531   3.453  -2.317  0.00  0.00           H+0
HETATM   21  H   UNK     0       0.244   3.803  -2.454  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.513   3.172  -0.110  0.00  0.00           H+0
HETATM   23  H   UNK     0      -1.866   4.045  -1.571  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.722   1.581  -2.712  0.00  0.00           H+0
HETATM   25  H   UNK     0      -3.185   2.305  -2.122  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.329   1.953   0.773  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.572   0.215   0.947  0.00  0.00           H+0
HETATM   28  H   UNK     0      -4.845   0.366  -1.022  0.00  0.00           H+0
HETATM   29  H   UNK     0      -2.040  -1.133  -0.122  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.991  -0.571  -2.826  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.345  -0.068  -2.269  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.361  -0.015  -0.158  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.933  -0.505   0.713  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.106   1.586   0.542  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.541   1.910   0.967  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.254  -2.279   0.528  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.558  -3.621  -0.570  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.101  -3.218  -0.092  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.679  -2.045  -3.708  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.048  -3.529  -2.982  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.565  -2.361  -2.385  0.00  0.00           H+0
CONECT    1    2   18   19   20                                             
CONECT    2   13    3    1                                                  
CONECT    3    2    4   21                                                  
CONECT    4    5    3   22   23                                             
CONECT    5    6    4   24   25                                             
CONECT    6    5    7    9                                                  
CONECT    7    6    8   26   27                                             
CONECT    8    7   28                                                       
CONECT    9    6   10   29                                                  
CONECT   10   14    9   30   11                                             
CONECT   11   14   12   31   10                                             
CONECT   12   11   13   32   33                                             
CONECT   13    2   12   34   35                                             
CONECT   14   10   11   15   16                                             
CONECT   15   14   36   37   38                                             
CONECT   16   14   17   39   40                                             
CONECT   17   16   41                                                       
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    1                                                            
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    4                                                            
CONECT   24    5                                                            
CONECT   25    5                                                            
CONECT   26    7                                                            
CONECT   27    7                                                            
CONECT   28    8                                                            
CONECT   29    9                                                            
CONECT   30   10                                                            
CONECT   31   11                                                            
CONECT   32   12                                                            
CONECT   33   12                                                            
CONECT   34   13                                                            
CONECT   35   13                                                            
CONECT   36   15                                                            
CONECT   37   15                                                            
CONECT   38   15                                                            
CONECT   39   16                                                            
CONECT   40   16                                                            
CONECT   41   17                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   84    0
END

RDKit          3D

41 42  0  0  0  0  0  0  0  0999 V2000
    2.4777    2.7177   -1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0662    2.5037   -1.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0356    3.1486   -1.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4166    3.1138   -1.2000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2041    1.9358   -1.7936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4415    0.7940   -0.8169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5130    1.0290    0.2171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7734    1.1324   -0.4272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7624   -0.3730   -0.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6989   -0.7387   -1.7901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7503   -0.4621   -1.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2681    0.0863   -0.1440 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9108    1.5530    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2589   -1.9036   -1.5736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1276   -2.7933   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6993   -2.6668   -2.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0288   -3.1347   -2.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.0857   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9088    1.7845   -1.8809 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5305    3.4527   -2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2442    3.8031   -2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5130    3.1717   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    4.0450   -1.5714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7224    1.5813   -2.7122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1850    2.3046   -2.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3287    1.9528    0.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5723    0.2150    0.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8454    0.3662   -1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0398   -1.1328   -0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9912   -0.5714   -2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3454   -0.0681   -2.2693 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611   -0.0145   -0.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330   -0.5053    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1059    1.5863    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5411    1.9095    0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2538   -2.2792    0.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5576   -3.6211   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1014   -3.2184   -0.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6792   -2.0445   -3.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0481   -3.5292   -2.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5654   -2.3608   -2.3847 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 10  1  0
 11 14  1  0
 13  2  1  0
  5  6  1  0
  3  2  2  0
  2  1  1  0
 11 12  1  0
  6  7  1  0
 12 13  1  0
  7  8  1  0
  5  4  1  0
 14 15  1  1
  6  9  2  0
 14 16  1  0
  9 10  1  0
 11 31  1  6
  3  4  1  0
 10 30  1  6
 10 11  1  0
 16 17  1  0
  3 21  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
  5 24  1  0
  5 25  1  0
  9 29  1  0
  4 22  1  0
  4 23  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 16 40  1  0
 17 41  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O₂

Average Mass

236.3550 Da

Monoisotopic Mass

236.17763 Da

IUPAC Name

[(1S,2E,6Z,10R,11S)-3-(hydroxymethyl)-7,11-dimethylbicyclo[8.1.0]undeca-2,6-dien-11-yl]methanol

Traditional Name

[(1S,2E,6Z,10R,11S)-3-(hydroxymethyl)-7,11-dimethylbicyclo[8.1.0]undeca-2,6-dien-11-yl]methanol

CAS Registry Number

Not Available

SMILES

[H]OC([H])([H])C1=C([H])/[C@@]2([H])[C@@]([H])(C([H])([H])C([H])([H])\C(=C([H])/C([H])([H])C\1([H])[H])C([H])([H])[H])[C@]2(C([H])([H])[H])C([H])([H])O[H]

InChI Identifier

InChI=1S/C15H24O2/c1-11-4-3-5-12(9-16)8-14-13(7-6-11)15(14,2)10-17/h4,8,13-14,16-17H,3,5-7,9-10H2,1-2H3/b11-4-,12-8+/t13-,14+,15+/m1/s1

InChI Key

DCQFUTANYUEHLR-TZCYELPTSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Guatteria guianensis	LOTUS Database	35616633
Guatteria multivenia	JEOL database	Zhang, Z., et al, J. Nat. Prod. 65, 856 (2002)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Germacrane sesquiterpenoids

Alternative Parents

Substituents

Germacrane sesquiterpenoid
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.49	ALOGPS
logP	1.9	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	16.95	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	72.07 m³·mol⁻¹	ChemAxon
Polarizability	27.6 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00045857

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102374060

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zhang, Z., et al. (2002). Zhang, Z., et al, J. Nat. Prod. 65, 856 (2002). J. Nat. Prod..

Showing NP-Card for Dihydromadolin K (NP0024579)

MOL for NP0024579 (Dihydromadolin K)

3D MOL for NP0024579 (Dihydromadolin K)

3D SDF for NP0024579 (Dihydromadolin K)

3D-SDF for NP0024579 (Dihydromadolin K)

PDB for NP0024579 (Dihydromadolin K)

3D PDB for NP0024579 (Dihydromadolin K)

SMILES for NP0024579 (Dihydromadolin K)

INCHI for NP0024579 (Dihydromadolin K)

Structure for NP0024579 (Dihydromadolin K)

3D Structure for NP0024579 (Dihydromadolin K)