Np mrd loader

Record Information
Version1.0
Created at2021-01-06 08:55:28 UTC
Updated at2021-07-15 17:42:59 UTC
NP-MRD IDNP0023897
Secondary Accession NumbersNone
Natural Product Identification
Common NameWAP-8294A2
Provided ByNPAtlasNPAtlas Logo
Description WAP-8294A2 is found in Lysobacter enzymogenes, Lysobacter sp. and Lysobacter sp.WAP-8294(FERM BP-4990). It was first documented in 1998 (PMID: 9917006). Based on a literature review very few articles have been published on 3-[6,18-bis(3-aminopropyl)-24-benzyl-8,11,14,17,20,23,29,32,35,38-decahydroxy-33-[hydroxy(C-hydroxycarbonimidoyl)methyl]-12-[(C-hydroxycarbonimidoyl)methyl]-30,36-bis(hydroxymethyl)-9-[(1H-indol-3-yl)methyl]-4,25-dimethyl-40-(4-methylpentyl)-21-(2-methylpropyl)-2,5,26-trioxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28,31,34,37-dodecaazacyclotetraconta-7,10,13,16,19,22,28,31,34,37-decaen-15-yl]propanoic acid (PMID: 34204563) (PMID: 32828420) (PMID: 32588501) (PMID: 31520522) (PMID: 29125739) (PMID: 29019678).
Structure
Thumb
Synonyms
ValueSource
3-[6,18-Bis(3-aminopropyl)-24-benzyl-8,11,14,17,20,23,29,32,35,38-decahydroxy-33-[hydroxy(C-hydroxycarbonimidoyl)methyl]-12-[(C-hydroxycarbonimidoyl)methyl]-30,36-bis(hydroxymethyl)-9-[(1H-indol-3-yl)methyl]-4,25-dimethyl-40-(4-methylpentyl)-21-(2-methylpropyl)-2,5,26-trioxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28,31,34,37-dodecaazacyclotetraconta-7,10,13,16,19,22,28,31,34,37-decaen-15-yl]propanoateGenerator
LotilibcinMeSH
Chemical FormulaC73H111N17O21
Average Mass1562.7890 Da
Monoisotopic Mass1561.81404 Da
IUPAC Name3-[(3R,6S,9S,12S,15S,18R,21S,24R,30R,33S,36R,40S)-6,18-bis(3-aminopropyl)-24-benzyl-33-[(S)-carbamoyl(hydroxy)methyl]-12-(carbamoylmethyl)-30,36-bis(hydroxymethyl)-9-[(1H-indol-3-yl)methyl]-4,25-dimethyl-40-(4-methylpentyl)-21-(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29,32,35,38-tridecaoxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28,31,34,37-dodecaazacyclotetracontan-15-yl]propanoic acid
Traditional Name3-[(3R,6S,9S,12S,15S,18R,21S,24R,30R,33S,36R,40S)-6,18-bis(3-aminopropyl)-24-benzyl-33-[(S)-carbamoyl(hydroxy)methyl]-12-(carbamoylmethyl)-30,36-bis(hydroxymethyl)-9-(1H-indol-3-ylmethyl)-3-isopropyl-4,25-dimethyl-40-(4-methylpentyl)-21-(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29,32,35,38-tridecaoxo-1-oxa-4,7,10,13,16,19,22,25,28,31,34,37-dodecaazacyclotetracontan-15-yl]propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)CCCC1CC(=O)NC(CO)C(=O)NC(C(O)C(N)=O)C(=O)NC(CO)C(=O)NCC(=O)N(C)C(CC2=CC=CC=C2)C(=O)NC(CC(C)C)C(=O)NC(CCCN)C(=O)NC(CCC(O)=O)C(=O)NC(CC(N)=O)C(=O)NC(CC2=CNC3=CC=CC=C23)C(=O)NC(CCCN)C(=O)N(C)C(C(C)C)C(=O)O1
InChI Identifier
InChI=1S/C73H111N17O21/c1-38(2)17-14-20-43-32-56(94)80-53(37-92)69(106)88-59(61(98)62(77)99)71(108)87-52(36-91)63(100)79-35-57(95)89(7)54(30-41-18-10-9-11-19-41)70(107)86-49(29-39(3)4)66(103)81-46(23-15-27-74)64(101)82-47(25-26-58(96)97)65(102)85-51(33-55(76)93)68(105)84-50(31-42-34-78-45-22-13-12-21-44(42)45)67(104)83-48(24-16-28-75)72(109)90(8)60(40(5)6)73(110)111-43/h9-13,18-19,21-22,34,38-40,43,46-54,59-61,78,91-92,98H,14-17,20,23-33,35-37,74-75H2,1-8H3,(H2,76,93)(H2,77,99)(H,79,100)(H,80,94)(H,81,103)(H,82,101)(H,83,104)(H,84,105)(H,85,102)(H,86,107)(H,87,108)(H,88,106)(H,96,97)
InChI KeyLEKBQPKGXGFBAN-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Lysobacter enzymogenesLOTUS Database
Lysobacter sp.NPAtlas
Lysobacter sp.WAP-8294(FERM BP-4990)Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.8ALOGPS
logP-8.5ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)3.49ChemAxon
pKa (Strongest Basic)9.88ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area609.92 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity395.06 m³·mol⁻¹ChemAxon
Polarizability164.4 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA018076
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID17299993
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16143496
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kato A, Nakaya S, Kokubo N, Aiba Y, Ohashi Y, Hirata H, Fujii K, Harada K: A new anti-MRSA antibiotic complex, WAP-8294A. I. Taxonomy, isolation and biological activities. J Antibiot (Tokyo). 1998 Oct;51(10):929-35. doi: 10.7164/antibiotics.51.929. [PubMed:9917006 ]
  2. Brescia F, Vlassi A, Bejarano A, Seidl B, Marchetti-Deschmann M, Schuhmacher R, Puopolo G: Characterisation of the Antibiotic Profile of Lysobacter capsici AZ78, an Effective Biological Control Agent of Plant Pathogenic Microorganisms. Microorganisms. 2021 Jun 17;9(6). pii: microorganisms9061320. doi: 10.3390/microorganisms9061320. [PubMed:34204563 ]
  3. Chen D, Tian L, Po KHL, Chen S, Li X: Total synthesis and a systematic structure-activity relationship study of WAP-8294A2. Bioorg Med Chem. 2020 Sep 15;28(18):115677. doi: 10.1016/j.bmc.2020.115677. Epub 2020 Jul 30. [PubMed:32828420 ]
  4. Chen DM, Yang HJ, Huang JG, Yuan L: Lysobacter enzymogenes LE16 autolysates have potential as biocontrol agents-Lysobacter sp. autolysates as biofungicide. J Appl Microbiol. 2020 Dec;129(6):1684-1692. doi: 10.1111/jam.14752. Epub 2020 Jul 11. [PubMed:32588501 ]
  5. Chen X, Li S, Yu L, Miller A, Du L: Systematic optimization for production of the anti-MRSA antibiotics WAP-8294A in an engineered strain of Lysobacter enzymogenes. Microb Biotechnol. 2019 Nov;12(6):1430-1440. doi: 10.1111/1751-7915.13484. Epub 2019 Sep 14. [PubMed:31520522 ]
  6. Yu L, Su W, Fey PD, Liu F, Du L: Yield Improvement of the Anti-MRSA Antibiotics WAP-8294A by CRISPR/dCas9 Combined with Refactoring Self-Protection Genes in Lysobacter enzymogenes OH11. ACS Synth Biol. 2018 Jan 19;7(1):258-266. doi: 10.1021/acssynbio.7b00293. Epub 2017 Nov 20. [PubMed:29125739 ]
  7. Itoh H, Tokumoto K, Kaji T, Paudel A, Panthee S, Hamamoto H, Sekimizu K, Inoue M: Total Synthesis and Biological Mode of Action of WAP-8294A2: A Menaquinone-Targeting Antibiotic. J Org Chem. 2018 Jul 6;83(13):6924-6935. doi: 10.1021/acs.joc.7b02318. Epub 2017 Nov 7. [PubMed:29019678 ]
  8. Wang R, Xu H, Zhao Y, Zhang J, Yuen GY, Qian G, Liu F: Lsp family proteins regulate antibiotic biosynthesis in Lysobacter enzymogenes OH11. AMB Express. 2017 Dec;7(1):123. doi: 10.1186/s13568-017-0421-2. Epub 2017 Jun 13. [PubMed:28618714 ]
  9. Chen H, Olson AS, Su W, Dussault PH, Du L: Fatty Acyl Incorporation in the Biosynthesis of WAP-8294A, a Group of Potent Anti-MRSA Cyclic Lipodepsipeptides. RSC Adv. 2015;5:105753-105759. doi: 10.1039/c5ra20784c. Epub 2015 Dec 9. [PubMed:26726302 ]
  10. Xu G, Zhao Y, Du L, Qian G, Liu F: Hfq regulates antibacterial antibiotic biosynthesis and extracellular lytic-enzyme production in Lysobacter enzymogenes OH11. Microb Biotechnol. 2015 May;8(3):499-509. doi: 10.1111/1751-7915.12246. Epub 2015 Feb 13. [PubMed:25683974 ]
  11. Wang Y, Zhao Y, Zhang J, Zhao Y, Shen Y, Su Z, Xu G, Du L, Huffman JM, Venturi V, Qian G, Liu F: Transcriptomic analysis reveals new regulatory roles of Clp signaling in secondary metabolite biosynthesis and surface motility in Lysobacter enzymogenes OH11. Appl Microbiol Biotechnol. 2014 Nov;98(21):9009-20. doi: 10.1007/s00253-014-6072-1. Epub 2014 Sep 19. [PubMed:25236801 ]
  12. Zhang J, Du L, Liu F, Xu F, Hu B, Venturi V, Qian G: Involvement of both PKS and NRPS in antibacterial activity in Lysobacter enzymogenes OH11. FEMS Microbiol Lett. 2014 Jun;355(2):170-6. doi: 10.1111/1574-6968.12457. Epub 2014 Jun 3. [PubMed:24801439 ]
  13. Zhang W, Li Y, Qian G, Wang Y, Chen H, Li YZ, Liu F, Shen Y, Du L: Identification and characterization of the anti-methicillin-resistant Staphylococcus aureus WAP-8294A2 biosynthetic gene cluster from Lysobacter enzymogenes OH11. Antimicrob Agents Chemother. 2011 Dec;55(12):5581-9. doi: 10.1128/AAC.05370-11. Epub 2011 Sep 19. [PubMed:21930890 ]