NP-MRD: Showing NP-Card for Nocardicin A (NP0023695)

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Record Information

Version

2.0

Created at

2021-01-06 08:45:07 UTC

Updated at

2021-07-15 17:42:26 UTC

NP-MRD ID

NP0023695

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Nocardicin A

Provided By

NPAtlas

Description

2-Amino-4-{4-[({1-[carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl}-C-hydroxycarbonimidoyl)(hydroxyimino)methyl]phenoxy}butanoic acid belongs to the class of organic compounds known as monobactams. Monobactams are compounds comprising beta-lactam ring is alone and not fused to another ring. Nocardicin A is found in Nocardia uniformis subsp. tsuyamanensis and Nocardia uniformis subsp. tsuyamanensis (ATCC 21806 FERM-P 971). Nocardicin A was first documented in 1976 (PMID: 956036). Based on a literature review very few articles have been published on 2-amino-4-{4-[({1-[carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl}-C-hydroxycarbonimidoyl)(hydroxyimino)methyl]phenoxy}butanoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120433D          

 60 62  0  0  0  0            999 V2000
    9.8130    0.1708    0.2861 N   0  0  2  0  0  0  0  0  0  0  0  0
    8.7168    1.0547   -0.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3667    0.4416    0.3553 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.1265   -0.8431   -0.3662 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9449   -1.4672   -0.0832 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6380   -1.1205   -0.2566 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1435    0.0192   -0.8152 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7689    0.2893   -0.9480 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8365   -0.6320   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -0.3598   -0.6768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0092    0.6159   -1.3688 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5981    1.5448   -2.0407 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5786   -1.2215   -0.0175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995   -2.1768    0.6782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9459   -0.8968   -0.2218 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9716   -1.6795    0.3807 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0555   -1.9890   -0.6224 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6310   -0.7328   -0.2380 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4688    0.2612   -0.8559 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -5.4879    2.5431   -1.5180 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8327    1.9717   -0.1253 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.2789    0.0177    1.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5146   -0.0930    1.6685 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0398   -0.8779    1.0275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2346   -0.5336    2.2215 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7053   -2.0517    0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.5214   -0.4857    1.0167 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6697    0.6664    0.5693 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6569    1.3111   -1.1072 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6263    1.2119    0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
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M  END

     RDKit          3D

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    9.8130    0.1708    0.2861 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7168    1.0547   -0.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242120433D          

 60 62  0  0  0  0            999 V2000
    9.8130    0.1708    0.2861 N   0  0  2  0  0  0  0  0  0  0  0  0
    8.7168    1.0547   -0.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -8.6767   -1.1337    0.5828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2789    0.0177    1.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5146   -0.0930    1.6685 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6526    1.2336    0.8988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4063    1.3529    0.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0398   -0.8779    1.0275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2346   -0.5336    2.2215 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3363   -1.7835    0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7053   -2.0517    0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8463    2.2899    0.8110 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0288    3.2387    0.7420 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8940    2.4302    1.7128 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5214   -0.4857    1.0167 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6697    0.6664    0.5693 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6569    1.3111   -1.1072 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6263    1.2119    0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3827    0.2205    1.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9721   -1.5611   -0.1877 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1985   -0.6374   -1.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8132    0.7530   -1.1891 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4826    1.2305   -1.3925 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4656    2.5484   -2.0491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1824   -0.0860   -0.8164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6317   -2.5513    0.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6711   -2.8899   -0.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7020   -2.0652   -1.6690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7139   -0.0242   -1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6435    2.8771    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9435   -1.8987   -0.4111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1672   -2.1067    0.6992 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3346   -0.0151    1.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1422    2.1332    1.2745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9607    2.3517    0.1935 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6622   -2.5409    0.4189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0096   -2.9865    0.6556 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7534    2.7866    2.6477 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 19 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  2  0  0  0  0
 18 30  1  0  0  0  0
 30 31  2  0  0  0  0
  9 32  1  0  0  0  0
 32 33  2  0  0  0  0
  2 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 33  6  1  0  0  0  0
 30 16  1  0  0  0  0
 29 23  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  6  0  0  0
  3 40  1  0  0  0  0
  3 41  1  0  0  0  0
  4 42  1  0  0  0  0
  4 43  1  0  0  0  0
  7 44  1  0  0  0  0
  8 45  1  0  0  0  0
 12 46  1  0  0  0  0
 15 47  1  0  0  0  0
 16 48  1  1  0  0  0
 17 49  1  0  0  0  0
 17 50  1  0  0  0  0
 19 51  1  6  0  0  0
 22 52  1  0  0  0  0
 24 53  1  0  0  0  0
 25 54  1  0  0  0  0
 27 55  1  0  0  0  0
 28 56  1  0  0  0  0
 29 57  1  0  0  0  0
 32 58  1  0  0  0  0
 33 59  1  0  0  0  0
 36 60  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0023695

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O\N=C(\C(=O)N([H])[C@@]1([H])C(=O)N(C1([H])[H])[C@]([H])(C(=O)O[H])C1=C([H])C([H])=C(O[H])C([H])=C1[H])C1=C([H])C([H])=C(OC([H])([H])C([H])([H])[C@]([H])(N([H])[H])C(=O)O[H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H24N4O9/c24-16(22(31)32)9-10-36-15-7-3-12(4-8-15)18(26-35)20(29)25-17-11-27(21(17)30)19(23(33)34)13-1-5-14(28)6-2-13/h1-8,16-17,19,28,35H,9-11,24H2,(H,25,29)(H,31,32)(H,33,34)/b26-18+/t16-,17+,19-/m0/s1

> <INCHI_KEY>
CTNZOGJNVIFEBA-UHFFFAOYSA-N

> <FORMULA>
C23H24N4O9

> <MOLECULAR_WEIGHT>
500.464

> <EXACT_MASS>
500.154328369

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
50.133259759256646

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-4-{4-[(1E)-{[(3R)-1-[(S)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoic acid

> <ALOGPS_LOGP>
-0.31

> <JCHEM_LOGP>
-2.457206766440827

> <ALOGPS_LOGS>
-3.62

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.0870217157274724

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7427143530918197

> <JCHEM_PKA_STRONGEST_BASIC>
9.057494758314968

> <JCHEM_POLAR_SURFACE_AREA>
212.07999999999996

> <JCHEM_REFRACTIVITY>
121.80449999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.20e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-4-{4-[(1E)-{[(3R)-1-[(S)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 60 62  0  0  0  0  0  0  0  0999 V2000
    9.8130    0.1708    0.2861 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7168    1.0547   -0.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.1435    0.0192   -0.8152 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7689    0.2893   -0.9480 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8365   -0.6320   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -0.3598   -0.6768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0092    0.6159   -1.3688 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5981    1.5448   -2.0407 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5786   -1.2215   -0.0175 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.6310   -0.7328   -0.2380 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4688    0.2612   -0.8559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9493    1.6197   -0.8557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4879    2.5431   -1.5180 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8327    1.9717   -0.1253 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8165    0.2086   -0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4598   -1.0071   -0.0229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6767   -1.1337    0.5828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2789    0.0177    1.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5146   -0.0930    1.6685 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6526    1.2336    0.8988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4063    1.3529    0.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0398   -0.8779    1.0275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2346   -0.5336    2.2215 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3363   -1.7835    0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7053   -2.0517    0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8463    2.2899    0.8110 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0288    3.2387    0.7420 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8940    2.4302    1.7128 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5214   -0.4857    1.0167 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6697    0.6664    0.5693 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6569    1.3111   -1.1072 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6263    1.2119    0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3827    0.2205    1.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9721   -1.5611   -0.1877 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1985   -0.6374   -1.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8132    0.7530   -1.1891 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4826    1.2305   -1.3925 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4656    2.5484   -2.0491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1824   -0.0860   -0.8164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6317   -2.5513    0.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6711   -2.8899   -0.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7020   -2.0652   -1.6690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7139   -0.0242   -1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6435    2.8771    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9435   -1.8987   -0.4111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1672   -2.1067    0.6992 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3346   -0.0151    1.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1422    2.1332    1.2745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9607    2.3517    0.1935 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6622   -2.5409    0.4189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0096   -2.9865    0.6556 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7534    2.7866    2.6477 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 10 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 19 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 26 28  1  0
 28 29  2  0
 18 30  1  0
 30 31  2  0
  9 32  1  0
 32 33  2  0
  2 34  1  0
 34 35  2  0
 34 36  1  0
 33  6  1  0
 30 16  1  0
 29 23  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  6
  3 40  1  0
  3 41  1  0
  4 42  1  0
  4 43  1  0
  7 44  1  0
  8 45  1  0
 12 46  1  0
 15 47  1  0
 16 48  1  1
 17 49  1  0
 17 50  1  0
 19 51  1  6
 22 52  1  0
 24 53  1  0
 25 54  1  0
 27 55  1  0
 28 56  1  0
 29 57  1  0
 32 58  1  0
 33 59  1  0
 36 60  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       9.813   0.171   0.286  0.00  0.00           N+0
HETATM    2  C   UNK     0       8.717   1.055  -0.031  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.367   0.442   0.355  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.127  -0.843  -0.366  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.945  -1.467  -0.083  0.00  0.00           O+0
HETATM    6  C   UNK     0       4.638  -1.121  -0.257  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.144   0.019  -0.815  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.769   0.289  -0.948  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.837  -0.632  -0.498  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.425  -0.360  -0.677  0.00  0.00           C+0
HETATM   11  N   UNK     0      -0.009   0.616  -1.369  0.00  0.00           N+0
HETATM   12  O   UNK     0       0.598   1.545  -2.041  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.579  -1.222  -0.018  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.300  -2.177   0.678  0.00  0.00           O+0
HETATM   15  N   UNK     0      -1.946  -0.897  -0.222  0.00  0.00           N+0
HETATM   16  C   UNK     0      -2.972  -1.680   0.381  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.056  -1.989  -0.622  0.00  0.00           C+0
HETATM   18  N   UNK     0      -4.631  -0.733  -0.238  0.00  0.00           N+0
HETATM   19  C   UNK     0      -5.469   0.261  -0.856  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.949   1.620  -0.856  0.00  0.00           C+0
HETATM   21  O   UNK     0      -5.488   2.543  -1.518  0.00  0.00           O+0
HETATM   22  O   UNK     0      -3.833   1.972  -0.125  0.00  0.00           O+0
HETATM   23  C   UNK     0      -6.816   0.209  -0.184  0.00  0.00           C+0
HETATM   24  C   UNK     0      -7.460  -1.007  -0.023  0.00  0.00           C+0
HETATM   25  C   UNK     0      -8.677  -1.134   0.583  0.00  0.00           C+0
HETATM   26  C   UNK     0      -9.279   0.018   1.051  0.00  0.00           C+0
HETATM   27  O   UNK     0     -10.515  -0.093   1.669  0.00  0.00           O+0
HETATM   28  C   UNK     0      -8.653   1.234   0.899  0.00  0.00           C+0
HETATM   29  C   UNK     0      -7.406   1.353   0.277  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.040  -0.878   1.028  0.00  0.00           C+0
HETATM   31  O   UNK     0      -4.235  -0.534   2.221  0.00  0.00           O+0
HETATM   32  C   UNK     0       2.336  -1.784   0.065  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.705  -2.052   0.198  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.846   2.290   0.811  0.00  0.00           C+0
HETATM   35  O   UNK     0       8.029   3.239   0.742  0.00  0.00           O+0
HETATM   36  O   UNK     0       9.894   2.430   1.713  0.00  0.00           O+0
HETATM   37  H   UNK     0       9.521  -0.486   1.017  0.00  0.00           H+0
HETATM   38  H   UNK     0      10.670   0.666   0.569  0.00  0.00           H+0
HETATM   39  H   UNK     0       8.657   1.311  -1.107  0.00  0.00           H+0
HETATM   40  H   UNK     0       6.626   1.212   0.140  0.00  0.00           H+0
HETATM   41  H   UNK     0       7.383   0.221   1.463  0.00  0.00           H+0
HETATM   42  H   UNK     0       7.972  -1.561  -0.188  0.00  0.00           H+0
HETATM   43  H   UNK     0       7.199  -0.637  -1.468  0.00  0.00           H+0
HETATM   44  H   UNK     0       4.813   0.753  -1.189  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.483   1.230  -1.393  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.466   2.548  -2.049  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.182  -0.086  -0.816  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.632  -2.551   0.982  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.671  -2.890  -0.354  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.702  -2.065  -1.669  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.714  -0.024  -1.926  0.00  0.00           H+0
HETATM   52  H   UNK     0      -3.644   2.877   0.248  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.944  -1.899  -0.411  0.00  0.00           H+0
HETATM   54  H   UNK     0      -9.167  -2.107   0.699  0.00  0.00           H+0
HETATM   55  H   UNK     0     -11.335  -0.015   1.052  0.00  0.00           H+0
HETATM   56  H   UNK     0      -9.142   2.133   1.274  0.00  0.00           H+0
HETATM   57  H   UNK     0      -6.961   2.352   0.194  0.00  0.00           H+0
HETATM   58  H   UNK     0       1.662  -2.541   0.419  0.00  0.00           H+0
HETATM   59  H   UNK     0       4.010  -2.986   0.656  0.00  0.00           H+0
HETATM   60  H   UNK     0       9.753   2.787   2.648  0.00  0.00           H+0
CONECT    1    2   37   38                                                  
CONECT    2    1    3   34   39                                             
CONECT    3    2    4   40   41                                             
CONECT    4    3    5   42   43                                             
CONECT    5    4    6                                                       
CONECT    6    5    7   33                                                  
CONECT    7    6    8   44                                                  
CONECT    8    7    9   45                                                  
CONECT    9    8   10   32                                                  
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11   46                                                       
CONECT   13   10   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   47                                                  
CONECT   16   15   17   30   48                                             
CONECT   17   16   18   49   50                                             
CONECT   18   17   19   30                                                  
CONECT   19   18   20   23   51                                             
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   52                                                       
CONECT   23   19   24   29                                                  
CONECT   24   23   25   53                                                  
CONECT   25   24   26   54                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26   55                                                       
CONECT   28   26   29   56                                                  
CONECT   29   28   23   57                                                  
CONECT   30   18   31   16                                                  
CONECT   31   30                                                            
CONECT   32    9   33   58                                                  
CONECT   33   32    6   59                                                  
CONECT   34    2   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   60                                                       
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    2                                                            
CONECT   40    3                                                            
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    4                                                            
CONECT   44    7                                                            
CONECT   45    8                                                            
CONECT   46   12                                                            
CONECT   47   15                                                            
CONECT   48   16                                                            
CONECT   49   17                                                            
CONECT   50   17                                                            
CONECT   51   19                                                            
CONECT   52   22                                                            
CONECT   53   24                                                            
CONECT   54   25                                                            
CONECT   55   27                                                            
CONECT   56   28                                                            
CONECT   57   29                                                            
CONECT   58   32                                                            
CONECT   59   33                                                            
CONECT   60   36                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  124    0
END

RDKit          3D

60 62  0  0  0  0  0  0  0  0999 V2000
    9.8130    0.1708    0.2861 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.7168    1.0547   -0.0309 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3667    0.4416    0.3553 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1265   -0.8431   -0.3662 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9449   -1.4672   -0.0832 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6380   -1.1205   -0.2566 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1435    0.0192   -0.8152 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7689    0.2893   -0.9480 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8365   -0.6320   -0.4984 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4246   -0.3598   -0.6768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0092    0.6159   -1.3688 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5981    1.5448   -2.0407 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5786   -1.2215   -0.0175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995   -2.1768    0.6782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9459   -0.8968   -0.2218 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9716   -1.6795    0.3807 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0555   -1.9890   -0.6224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6310   -0.7328   -0.2380 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4688    0.2612   -0.8559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9493    1.6197   -0.8557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4879    2.5431   -1.5180 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8327    1.9717   -0.1253 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8165    0.2086   -0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4598   -1.0071   -0.0229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6767   -1.1337    0.5828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2789    0.0177    1.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5146   -0.0930    1.6685 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6526    1.2336    0.8988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4063    1.3529    0.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0398   -0.8779    1.0275 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2346   -0.5336    2.2215 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3363   -1.7835    0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7053   -2.0517    0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8463    2.2899    0.8110 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0288    3.2387    0.7420 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8940    2.4302    1.7128 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5214   -0.4857    1.0167 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6697    0.6664    0.5693 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6569    1.3111   -1.1072 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6263    1.2119    0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3827    0.2205    1.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9721   -1.5611   -0.1877 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1985   -0.6374   -1.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8132    0.7530   -1.1891 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4826    1.2305   -1.3925 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4656    2.5484   -2.0491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1824   -0.0860   -0.8164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6317   -2.5513    0.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6711   -2.8899   -0.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7020   -2.0652   -1.6690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7139   -0.0242   -1.9261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6435    2.8771    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9435   -1.8987   -0.4111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1672   -2.1067    0.6992 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3346   -0.0151    1.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1422    2.1332    1.2745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9607    2.3517    0.1935 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6622   -2.5409    0.4189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0096   -2.9865    0.6556 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7534    2.7866    2.6477 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 10 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 19 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 26 28  1  0
 28 29  2  0
 18 30  1  0
 30 31  2  0
  9 32  1  0
 32 33  2  0
  2 34  1  0
 34 35  2  0
 34 36  1  0
 33  6  1  0
 30 16  1  0
 29 23  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  6
  3 40  1  0
  3 41  1  0
  4 42  1  0
  4 43  1  0
  7 44  1  0
  8 45  1  0
 12 46  1  0
 15 47  1  0
 16 48  1  1
 17 49  1  0
 17 50  1  0
 19 51  1  6
 22 52  1  0
 24 53  1  0
 25 54  1  0
 27 55  1  0
 28 56  1  0
 29 57  1  0
 32 58  1  0
 33 59  1  0
 36 60  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-Amino-4-{4-[({1-[carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl}-C-hydroxycarbonimidoyl)(hydroxyimino)methyl]phenoxy}butanoate	Generator
Nocardicin	MeSH
Nocardicin a	MeSH
Nocardicin a, sodium salt	MeSH
Nocarcidins	MeSH
Nocardicin b	MeSH

Chemical Formula

C₂₃H₂₄N₄O₉

Average Mass

500.4640 Da

Monoisotopic Mass

500.15433 Da

IUPAC Name

(2S)-2-amino-4-{4-[(1E)-{[(3R)-1-[(S)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoic acid

Traditional Name

(2S)-2-amino-4-{4-[(1E)-{[(3R)-1-[(S)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoic acid

CAS Registry Number

Not Available

SMILES

NC(CCOC1=CC=C(C=C1)C(=NO)C(=O)NC1CN(C(C(O)=O)C2=CC=C(O)C=C2)C1=O)C(O)=O

InChI Identifier

InChI=1S/C23H24N4O9/c24-16(22(31)32)9-10-36-15-7-3-12(4-8-15)18(26-35)20(29)25-17-11-27(21(17)30)19(23(33)34)13-1-5-14(28)6-2-13/h1-8,16-17,19,28,35H,9-11,24H2,(H,25,29)(H,31,32)(H,33,34)

InChI Key

CTNZOGJNVIFEBA-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nocardia uniformis subsp. tsuyamanensis	NPAtlas	956036
Nocardia uniformis subsp. tsuyamanensis (ATCC 21806 FERM-P 971)	Bacteria	KNApSAcK

Species Where Detected

Species Name	Source	Reference
Nocardia uniformis subsp. tsuyamanensis ATCC 21806	KNApSAcK Database	22123792

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as monobactams. Monobactams are compounds comprising beta-lactam ring is alone and not fused to another ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactams

Sub Class

Beta lactams

Direct Parent

Monobactams

Alternative Parents

Substituents

Monobactam
N-acyl-alpha amino acid or derivatives
Alpha-amino acid
Alpha-amino acid or derivatives
Phenylacetamide
Phenoxy compound
Phenol ether
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Phenol
Dicarboxylic acid or derivatives
Benzenoid
Monocyclic benzene moiety
Tertiary carboxylic acid amide
Ketoxime
Amino acid
Amino acid or derivatives
Carboxamide group
Secondary carboxylic acid amide
Azetidine
Azacycle
Ether
Carboxylic acid derivative
Carboxylic acid
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Carbonyl group
Organooxygen compound
Primary amine
Hydrocarbon derivative
Amine
Organic oxide
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.31	ALOGPS
logP	-2.5	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	1.74	ChemAxon
pKa (Strongest Basic)	9.06	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	212.08 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	121.8 m³·mol⁻¹	ChemAxon
Polarizability	50.13 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA007538

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

5198541

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6794142

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Aoki H, Sakai H, Kohsaka M, Konomi T, Hosoda J: Nocardicin A, a new monocyclic beta-lactam antibiotic. I. Discovery, isolation and characterization. J Antibiot (Tokyo). 1976 May;29(5):492-500. doi: 10.7164/antibiotics.29.492. [PubMed:956036 ]

Showing NP-Card for Nocardicin A (NP0023695)

MOL for NP0023695 (Nocardicin A)

3D MOL for NP0023695 (Nocardicin A)

3D SDF for NP0023695 (Nocardicin A)

3D-SDF for NP0023695 (Nocardicin A)

PDB for NP0023695 (Nocardicin A)

3D PDB for NP0023695 (Nocardicin A)

SMILES for NP0023695 (Nocardicin A)

INCHI for NP0023695 (Nocardicin A)

Structure for NP0023695 (Nocardicin A)

3D Structure for NP0023695 (Nocardicin A)