Np mrd loader

Record Information
Version1.0
Created at2021-01-06 08:35:44 UTC
Updated at2021-07-15 17:41:58 UTC
NP-MRD IDNP0023522
Secondary Accession NumbersNone
Natural Product Identification
Common NameGE-3B
Provided ByNPAtlasNPAtlas Logo
Description GE-3B is found in Streptomyces sp. It was first documented in 1997 (PMID: 9315078). Based on a literature review very few articles have been published on GE-3B.
Structure
Thumb
Synonyms
ValueSource
(2R,3S)-2-({[(3S)-2-[(2R)-2-[(2S)-2-{1-[(3R)-2-[(2S,3S)-2-({2-[(2R,5S,6S)-6-[(2E,4S,6E)-4,6-dimethyl-5-oxoocta-2,6-dien-2-yl]-2-hydroxy-5-methyloxan-2-yl]-1,2-dihydroxypropylidene}amino)-3-hydroxy-4-methylpentanoyl]-1,2-diazinan-3-yl]-N-hydroxyformamido}-N-methylpropanamido]-4-methylpentanoyl]-1,2-diazinan-3-yl](hydroxy)methylidene}amino)-3-hydroxybutanoateGenerator
Chemical FormulaC49H82N8O15
Average Mass1023.2360 Da
Monoisotopic Mass1022.58996 Da
IUPAC Name(2R,3S)-2-{[(3S)-2-[(2R)-2-[(2S)-2-{1-[(3R)-2-[(2S,3S)-2-[(2R)-2-[(2R,5S,6S)-6-[(2E,4S,6E)-4,6-dimethyl-5-oxoocta-2,6-dien-2-yl]-2-hydroxy-5-methyloxan-2-yl]-2-hydroxypropanamido]-3-hydroxy-4-methylpentanoyl]-1,2-diazinan-3-yl]-N-hydroxyformamido}-N-methylpropanamido]-4-methylpentanoyl]-1,2-diazinan-3-yl]formamido}-3-hydroxybutanoic acid
Traditional Name(2R,3S)-2-{[(3S)-2-[(2R)-2-[(2S)-2-{1-[(3R)-2-[(2S,3S)-2-[(2R)-2-[(2R,5S,6S)-6-[(2E,4S,6E)-4,6-dimethyl-5-oxoocta-2,6-dien-2-yl]-2-hydroxy-5-methyloxan-2-yl]-2-hydroxypropanamido]-3-hydroxy-4-methylpentanoyl]-1,2-diazinan-3-yl]-N-hydroxyformamido}-N-methylpropanamido]-4-methylpentanoyl]-1,2-diazinan-3-yl]formamido}-3-hydroxybutanoic acid
CAS Registry NumberNot Available
SMILES
C\C=C(/C)C(=O)[C@@H](C)\C=C(/C)[C@H]1O[C@](O)(CC[C@@H]1C)C(C)(O)C(=O)N[C@@H]([C@@H](O)C(C)C)C(=O)N1NCCC[C@@H]1C(=O)N(O)[C@@H](C)C(=O)N(C)[C@H](CC(C)C)C(=O)N1NCCC[C@H]1C(=O)N[C@H]([C@H](C)O)C(O)=O
InChI Identifier
InChI=1S/C49H82N8O15/c1-14-27(6)39(60)29(8)24-30(9)40-28(7)19-20-49(70,72-40)48(12,69)47(68)53-37(38(59)26(4)5)45(65)56-34(18-16-22-51-56)44(64)57(71)31(10)42(62)54(13)35(23-25(2)3)43(63)55-33(17-15-21-50-55)41(61)52-36(32(11)58)46(66)67/h14,24-26,28-29,31-38,40,50-51,58-59,69-71H,15-23H2,1-13H3,(H,52,61)(H,53,68)(H,66,67)/b27-14+,30-24+/t28-,29-,31-,32-,33-,34+,35+,36+,37-,38-,40-,48?,49+/m0/s1
InChI KeyJZHHEDXKUYAXEI-XEOSYUJQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.8ALOGPS
logP-0.14ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.02ChemAxon
pKa (Strongest Basic)4.29ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area328.25 ŲChemAxon
Rotatable Bond Count21ChemAxon
Refractivity283.82 m³·mol⁻¹ChemAxon
Polarizability108.92 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA005158
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78436860
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139584533
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Sakai Y, Yoshida T, Tsujita T, Ochiai K, Agatsuma T, Saitoh Y, Tanaka F, Akiyama T, Akinaga S, Mizukami T: GE3, a novel hexadepsipeptide antitumor antibiotic, produced by Streptomyces sp. I. Taxonomy, production, isolation, physico-chemical properties, and biological activities. J Antibiot (Tokyo). 1997 Aug;50(8):659-64. doi: 10.7164/antibiotics.50.659. [PubMed:9315078 ]