Np mrd loader

Record Information
Version2.0
Created at2021-01-06 08:29:35 UTC
Updated at2021-07-15 17:41:40 UTC
NP-MRD IDNP0023411
Secondary Accession NumbersNone
Natural Product Identification
Common NameClonostachin
Provided ByNPAtlasNPAtlas Logo
Description Clonostachin is found in Clonostachys and Clonostachys sp. F5898. Clonostachin was first documented in 1997 (PMID: 9099218). Based on a literature review very few articles have been published on CLONOSTACHIN.
Structure
Thumb
Synonyms
ValueSource
(2S)-N-[(2R)-1-[(2S,4R)-4-Hydroxy-2-[(1-{[(1R)-1-({1-[(2S,4R)-4-hydroxy-2-{[(1R)-1-methyl-1-{[(2R,3S)-3-methyl-1-oxo-1-{[(2R,3R,4R,5R)-1,2,4,5,6-pentahydroxyhexan-3-yl]oxy}pentan-2-yl]-C-hydroxycarbonimidoyl}propyl]-C-hydroxycarbonimidoyl}pyrrolidin-1-yl]-2-methyl-1-oxopropan-2-yl}-C-hydroxycarbonimidoyl)-1-methylpropyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-2-methyl-1-oxobutan-2-yl]-2-({hydroxy[(2S,4R)-4-hydroxy-1-[(2S)-2-{[(2S)-1-hydroxy-2-({hydroxy[(2S,4R)-4-hydroxy-1-{2-[(1-hydroxyethylidene)amino]-2-methylpropanoyl}pyrrolidin-2-yl]methylidene}amino)-4-methylpentylidene]amino}-2-methylbutanoyl]pyrrolidin-2-yl]methylidene}amino)-4-methylpentanimidateGenerator
Chemical FormulaC78H134N14O25
Average Mass1668.0030 Da
Monoisotopic Mass1666.96446 Da
IUPAC Name(2R,3R,4R,5R)-1,2,4,5,6-pentahydroxyhexan-3-yl (2R,3S)-2-[(2R)-2-{[(2S,4R)-1-{2-[(2R)-2-(2-{[(2S,4R)-1-[(2R)-2-[(2S)-2-{[(2S,4R)-1-[(2S)-2-[(2S)-2-{[(2S,4R)-1-(2-acetamido-2-methylpropanoyl)-4-hydroxypyrrolidin-2-yl]formamido}-4-methylpentanamido]-2-methylbutanoyl]-4-hydroxypyrrolidin-2-yl]formamido}-4-methylpentanamido]-2-methylbutanoyl]-4-hydroxypyrrolidin-2-yl]formamido}-2-methylpropanamido)-2-methylbutanamido]-2-methylpropanoyl}-4-hydroxypyrrolidin-2-yl]formamido}-2-methylbutanamido]-3-methylpentanoate
Traditional Name(2R,3R,4R,5R)-1,2,4,5,6-pentahydroxyhexan-3-yl (2R,3S)-2-[(2R)-2-{[(2S,4R)-1-{2-[(2R)-2-(2-{[(2S,4R)-1-[(2R)-2-[(2S)-2-{[(2S,4R)-1-[(2S)-2-[(2S)-2-{[(2S,4R)-1-(2-acetamido-2-methylpropanoyl)-4-hydroxypyrrolidin-2-yl]formamido}-4-methylpentanamido]-2-methylbutanoyl]-4-hydroxypyrrolidin-2-yl]formamido}-4-methylpentanamido]-2-methylbutanoyl]-4-hydroxypyrrolidin-2-yl]formamido}-2-methylpropanamido)-2-methylbutanamido]-2-methylpropanoyl}-4-hydroxypyrrolidin-2-yl]formamido}-2-methylbutanamido]-3-methylpentanoate
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@@H](NC(=O)[C@@](C)(CC)NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)C(C)(C)NC(=O)[C@@](C)(CC)NC(=O)C(C)(C)NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@@](C)(CC)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@](C)(CC)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)C(C)(C)NC(C)=O)C(=O)O[C@H]([C@H](O)CO)[C@H](O)[C@H](O)CO
InChI Identifier
InChI=1S/C78H134N14O25/c1-22-41(10)55(64(109)117-57(54(101)38-94)56(102)53(100)37-93)81-66(111)75(18,23-2)86-63(108)52-32-45(98)34-90(52)69(114)74(16,17)87-67(112)76(19,24-3)88-65(110)72(12,13)83-62(107)51-31-46(99)36-92(51)71(116)78(21,26-5)85-59(104)48(28-40(8)9)80-61(106)50-30-44(97)35-91(50)70(115)77(20,25-4)84-58(103)47(27-39(6)7)79-60(105)49-29-43(96)33-89(49)68(113)73(14,15)82-42(11)95/h39-41,43-57,93-94,96-102H,22-38H2,1-21H3,(H,79,105)(H,80,106)(H,81,111)(H,82,95)(H,83,107)(H,84,103)(H,85,104)(H,86,108)(H,87,112)(H,88,110)/t41-,43+,44+,45+,46+,47-,48-,49-,50-,51-,52-,53+,54+,55+,56+,57+,75+,76+,77-,78+/m0/s1
InChI KeyFXTKDCWUFZIDPM-QPEYCMPISA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
ClonostachysNPAtlas
Clonostachys sp. F5898Plant
Clonostachys sp. F5898KNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-5.3ChemAxon
pKa (Strongest Acidic)11.31ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count24ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area580.61 ŲChemAxon
Rotatable Bond Count41ChemAxon
Refractivity417.78 m³·mol⁻¹ChemAxon
Polarizability175.85 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA011558
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00016299
Chemspider ID30827953
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73353449
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Chikanishi T, Hasumi K, Harada T, Kawasaki N, Endo A: Clonostachin, a novel peptaibol that inhibits platelet aggregation. J Antibiot (Tokyo). 1997 Feb;50(2):105-10. doi: 10.7164/antibiotics.50.105. [PubMed:9099218 ]