NP-MRD: Showing NP-Card for Pyralomicin 1a (NP0023226)

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Record Information

Version

2.0

Created at

2021-01-06 08:20:26 UTC

Updated at

2021-07-15 17:41:11 UTC

NP-MRD ID

NP0023226

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pyralomicin 1a

Provided By

NPAtlas

Description

Pyralomicin 1a is found in Actinomadura spiralis MI178-34F18, Microtetraspora and Nonomuraea spiralis. Based on a literature review very few articles have been published on 2,6-dichloro-1-[(1R,4R,5R,6S)-5,6-dihydroxy-3-(hydroxymethyl)-4-methoxycyclohex-2-en-1-yl]-5-hydroxy-8-methyl-1H,4H-chromeno[2,3-b]pyrrol-4-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105403D          

 49 52  0  0  0  0            999 V2000
    4.9009    2.7416    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5989    2.3492    0.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5378    0.9480    0.6959 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1672    0.6025   -0.7041 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1640    0.9162   -1.7996 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3240    0.1862   -1.4785 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    0.0362   -1.0579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0298   -0.2798    0.0039 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0076   -1.1730   -0.4206 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2006   -2.4050   -0.9367 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7238   -3.2349   -1.2241 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.0192   -2.9783   -1.2336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9681   -2.0671   -0.8867 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9202   -3.1532   -1.4335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0673   -1.0438   -0.5418 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.4841    1.1459    0.3291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140    1.1428    0.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3869    2.3192    0.9193 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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 18 41  1  0  0  0  0
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 29 48  1  1  0  0  0
 30 49  1  0  0  0  0
M  END

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
    4.9009    2.7416    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5989    2.3492    0.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5378    0.9480    0.6959 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1672    0.6025   -0.7041 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242105403D          

 49 52  0  0  0  0            999 V2000
    4.9009    2.7416    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5989    2.3492    0.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
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 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
  8 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29  3  1  0  0  0  0
 26  9  1  0  0  0  0
 26 13  2  0  0  0  0
 24 16  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  3 34  1  1  0  0  0
  5 35  1  0  0  0  0
  5 36  1  0  0  0  0
  6 37  1  0  0  0  0
  7 38  1  0  0  0  0
  8 39  1  1  0  0  0
 12 40  1  0  0  0  0
 18 41  1  0  0  0  0
 21 42  1  0  0  0  0
 23 43  1  0  0  0  0
 23 44  1  0  0  0  0
 23 45  1  0  0  0  0
 27 46  1  6  0  0  0
 28 47  1  0  0  0  0
 29 48  1  1  0  0  0
 30 49  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0023226

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C3=C(OC2=C(C([H])=C1Cl)C([H])([H])[H])N(C(Cl)=C3[H])[C@]1([H])C([H])=C(C([H])([H])O[H])[C@@]([H])(OC([H])([H])[H])[C@]([H])(O[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H19Cl2NO7/c1-7-3-10(21)15(26)13-14(25)9-5-12(22)23(20(9)30-18(7)13)11-4-8(6-24)19(29-2)17(28)16(11)27/h3-5,11,16-17,19,24,26-28H,6H2,1-2H3/t11-,16+,17-,19-/m1/s1

> <INCHI_KEY>
JPPZZIRKTBZEAJ-JLBIYAHBSA-N

> <FORMULA>
C20H19Cl2NO7

> <MOLECULAR_WEIGHT>
456.27

> <EXACT_MASS>
455.0538574

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
44.08620686769684

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,6-dichloro-1-[(1R,4R,5R,6S)-5,6-dihydroxy-3-(hydroxymethyl)-4-methoxycyclohex-2-en-1-yl]-5-hydroxy-8-methyl-1H,4H-chromeno[2,3-b]pyrrol-4-one

> <ALOGPS_LOGP>
2.29

> <JCHEM_LOGP>
2.265617075999999

> <ALOGPS_LOGS>
-3.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.871270616560405

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.31028634701003

> <JCHEM_PKA_STRONGEST_BASIC>
-2.766427873765081

> <JCHEM_POLAR_SURFACE_AREA>
121.38000000000001

> <JCHEM_REFRACTIVITY>
109.07309999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.24e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,6-dichloro-1-[(1R,4R,5R,6S)-5,6-dihydroxy-3-(hydroxymethyl)-4-methoxycyclohex-2-en-1-yl]-5-hydroxy-8-methylchromeno[2,3-b]pyrrol-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
    4.9009    2.7416    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5989    2.3492    0.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5378    0.9480    0.6959 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1672    0.6025   -0.7041 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1640    0.9162   -1.7996 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3240    0.1862   -1.4785 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    0.0362   -1.0579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0298   -0.2798    0.0039 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0076   -1.1730   -0.4206 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2006   -2.4050   -0.9367 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7238   -3.2349   -1.2241 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.0192   -2.9783   -1.2336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9681   -2.0671   -0.8867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3489   -2.1365   -0.9760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9202   -3.1532   -1.4335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0673   -1.0438   -0.5418 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4484   -1.0343   -0.5976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1100   -2.1295   -1.0924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1597    0.0504   -0.1666 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9089    0.0743   -0.2320 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -5.4841    1.1459    0.3291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140    1.1428    0.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3869    2.3192    0.9193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3829    0.0459   -0.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0718    0.0631    0.0157 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3270   -0.9571   -0.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8392   -0.8062    1.1734 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0500   -1.3696    2.1544 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5885    0.3905    1.7204 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2760    0.0402    2.8735 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177    3.8300    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6255    2.4203    0.4259 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1835    2.2670    2.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5626    0.5465    0.8987 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4218    1.9774   -1.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7866    0.5728   -2.7642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0286   -0.7055   -1.1626 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8008   -0.1944   -2.0954 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5713    0.6748    0.3539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2049   -3.9608   -1.6599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1171   -2.1459   -1.1430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0282    2.0199    0.6776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0540    2.1227    1.9540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5283    2.5412    0.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0299    3.2052    0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6059   -1.5043    0.7808 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1042   -2.3593    2.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8386    1.1893    1.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8047   -0.7810    2.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  1  0
 22 24  2  0
 24 25  1  0
 25 26  1  0
  8 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 29  3  1  0
 26  9  1  0
 26 13  2  0
 24 16  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  1
  5 35  1  0
  5 36  1  0
  6 37  1  0
  7 38  1  0
  8 39  1  1
 12 40  1  0
 18 41  1  0
 21 42  1  0
 23 43  1  0
 23 44  1  0
 23 45  1  0
 27 46  1  6
 28 47  1  0
 29 48  1  1
 30 49  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.901   2.742   1.202  0.00  0.00           C+0
HETATM    2  O   UNK     0       3.599   2.349   0.853  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.538   0.948   0.696  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.167   0.603  -0.704  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.164   0.916  -1.800  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.324   0.186  -1.478  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.020   0.036  -1.058  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.030  -0.280   0.004  0.00  0.00           C+0
HETATM    9  N   UNK     0       0.008  -1.173  -0.421  0.00  0.00           N+0
HETATM   10  C   UNK     0       0.201  -2.405  -0.937  0.00  0.00           C+0
HETATM   11 Cl   UNK     0       1.724  -3.235  -1.224  0.00  0.00          Cl+0
HETATM   12  C   UNK     0      -1.019  -2.978  -1.234  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.968  -2.067  -0.887  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.349  -2.136  -0.976  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.920  -3.153  -1.434  0.00  0.00           O+0
HETATM   16  C   UNK     0      -4.067  -1.044  -0.542  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.448  -1.034  -0.598  0.00  0.00           C+0
HETATM   18  O   UNK     0      -6.110  -2.130  -1.092  0.00  0.00           O+0
HETATM   19  C   UNK     0      -6.160   0.050  -0.167  0.00  0.00           C+0
HETATM   20 Cl   UNK     0      -7.909   0.074  -0.232  0.00  0.00          Cl+0
HETATM   21  C   UNK     0      -5.484   1.146   0.329  0.00  0.00           C+0
HETATM   22  C   UNK     0      -4.114   1.143   0.387  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.387   2.319   0.919  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.383   0.046  -0.048  0.00  0.00           C+0
HETATM   25  O   UNK     0      -2.072   0.063   0.016  0.00  0.00           O+0
HETATM   26  C   UNK     0      -1.327  -0.957  -0.386  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.839  -0.806   1.173  0.00  0.00           C+0
HETATM   28  O   UNK     0       1.050  -1.370   2.154  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.588   0.391   1.720  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.276   0.040   2.874  0.00  0.00           O+0
HETATM   31  H   UNK     0       4.918   3.830   1.316  0.00  0.00           H+0
HETATM   32  H   UNK     0       5.625   2.420   0.426  0.00  0.00           H+0
HETATM   33  H   UNK     0       5.184   2.267   2.167  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.563   0.547   0.899  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.422   1.977  -1.772  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.787   0.573  -2.764  0.00  0.00           H+0
HETATM   37  H   UNK     0       5.029  -0.706  -1.163  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.801  -0.194  -2.095  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.571   0.675   0.354  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.205  -3.961  -1.660  0.00  0.00           H+0
HETATM   41  H   UNK     0      -7.117  -2.146  -1.143  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.028   2.020   0.678  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.054   2.123   1.954  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.528   2.541   0.234  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.030   3.205   0.930  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.606  -1.504   0.781  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.104  -2.359   2.161  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.839   1.189   1.978  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.805  -0.781   2.711  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   29   34                                             
CONECT    4    3    5    7                                                  
CONECT    5    4    6   35   36                                             
CONECT    6    5   37                                                       
CONECT    7    4    8   38                                                  
CONECT    8    7    9   27   39                                             
CONECT    9    8   10   26                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   40                                                  
CONECT   13   12   14   26                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   24                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17   41                                                       
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   42                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22   43   44   45                                             
CONECT   24   22   25   16                                                  
CONECT   25   24   26                                                       
CONECT   26   25    9   13                                                  
CONECT   27    8   28   29   46                                             
CONECT   28   27   47                                                       
CONECT   29   27   30    3   48                                             
CONECT   30   29   49                                                       
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    5                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    8                                                            
CONECT   40   12                                                            
CONECT   41   18                                                            
CONECT   42   21                                                            
CONECT   43   23                                                            
CONECT   44   23                                                            
CONECT   45   23                                                            
CONECT   46   27                                                            
CONECT   47   28                                                            
CONECT   48   29                                                            
CONECT   49   30                                                            
MASTER        0    0    0    0    0    0    0    0   49    0  104    0
END

RDKit          3D

49 52  0  0  0  0  0  0  0  0999 V2000
    4.9009    2.7416    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5989    2.3492    0.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5378    0.9480    0.6959 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1672    0.6025   -0.7041 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1640    0.9162   -1.7996 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3240    0.1862   -1.4785 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    0.0362   -1.0579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0298   -0.2798    0.0039 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0076   -1.1730   -0.4206 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2006   -2.4050   -0.9367 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7238   -3.2349   -1.2241 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.0192   -2.9783   -1.2336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9681   -2.0671   -0.8867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3489   -2.1365   -0.9760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9202   -3.1532   -1.4335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0673   -1.0438   -0.5418 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4484   -1.0343   -0.5976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1100   -2.1295   -1.0924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1597    0.0504   -0.1666 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9089    0.0743   -0.2320 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -5.4841    1.1459    0.3291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1140    1.1428    0.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3869    2.3192    0.9193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3829    0.0459   -0.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0718    0.0631    0.0157 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3270   -0.9571   -0.3864 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8392   -0.8062    1.1734 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0500   -1.3696    2.1544 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5885    0.3905    1.7204 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2760    0.0402    2.8735 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177    3.8300    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6255    2.4203    0.4259 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1835    2.2670    2.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5626    0.5465    0.8987 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4218    1.9774   -1.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7866    0.5728   -2.7642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0286   -0.7055   -1.1626 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8008   -0.1944   -2.0954 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5713    0.6748    0.3539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2049   -3.9608   -1.6599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1171   -2.1459   -1.1430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0282    2.0199    0.6776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0540    2.1227    1.9540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5283    2.5412    0.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0299    3.2052    0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6059   -1.5043    0.7808 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1042   -2.3593    2.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8386    1.1893    1.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8047   -0.7810    2.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  4  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  1  0
 22 24  2  0
 24 25  1  0
 25 26  1  0
  8 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 29  3  1  0
 26  9  1  0
 26 13  2  0
 24 16  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  1
  5 35  1  0
  5 36  1  0
  6 37  1  0
  7 38  1  0
  8 39  1  1
 12 40  1  0
 18 41  1  0
 21 42  1  0
 23 43  1  0
 23 44  1  0
 23 45  1  0
 27 46  1  6
 28 47  1  0
 29 48  1  1
 30 49  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₁₉Cl₂NO₇

Average Mass

456.2700 Da

Monoisotopic Mass

455.05386 Da

IUPAC Name

2,6-dichloro-1-[(1R,4R,5R,6S)-5,6-dihydroxy-3-(hydroxymethyl)-4-methoxycyclohex-2-en-1-yl]-5-hydroxy-8-methyl-1H,4H-chromeno[2,3-b]pyrrol-4-one

Traditional Name

2,6-dichloro-1-[(1R,4R,5R,6S)-5,6-dihydroxy-3-(hydroxymethyl)-4-methoxycyclohex-2-en-1-yl]-5-hydroxy-8-methylchromeno[2,3-b]pyrrol-4-one

CAS Registry Number

Not Available

SMILES

CO[C@H]1[C@H](O)[C@@H](O)[C@@H](C=C1CO)N1C(Cl)=CC2=C1OC1=C(C(O)=C(Cl)C=C1C)C2=O

InChI Identifier

InChI=1S/C20H19Cl2NO7/c1-7-3-10(21)15(26)13-14(25)9-5-12(22)23(20(9)30-18(7)13)11-4-8(6-24)19(29-2)17(28)16(11)27/h3-5,11,16-17,19,24,26-28H,6H2,1-2H3/t11-,16+,17-,19-/m1/s1

InChI Key

JPPZZIRKTBZEAJ-JLBIYAHBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Actinomadura spiralis MI178-34F18	Bacteria	KNApSAcK
Microtetraspora	NPAtlas	8784427
Nonomuraea spiralis	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.29	ALOGPS
logP	2.27	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	7.31	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	121.38 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	109.07 m³·mol⁻¹	ChemAxon
Polarizability	44.09 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA013382

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

2331433

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3072006

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Pyralomicin 1a (NP0023226)

MOL for NP0023226 (Pyralomicin 1a)

3D MOL for NP0023226 (Pyralomicin 1a)

3D SDF for NP0023226 (Pyralomicin 1a)

3D-SDF for NP0023226 (Pyralomicin 1a)

PDB for NP0023226 (Pyralomicin 1a)

3D PDB for NP0023226 (Pyralomicin 1a)

SMILES for NP0023226 (Pyralomicin 1a)

INCHI for NP0023226 (Pyralomicin 1a)

Structure for NP0023226 (Pyralomicin 1a)

3D Structure for NP0023226 (Pyralomicin 1a)