NP-MRD: Showing NP-Card for Jadomycin B (NP0023000)

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Record Information

Version

2.0

Created at

2021-01-06 08:08:05 UTC

Updated at

2021-07-15 17:40:34 UTC

NP-MRD ID

NP0023000

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Jadomycin B

Provided By

NPAtlas

Description

Jadomycin B is found in Streptomyces bingchenggensis and Streptomyces venezuelae. Jadomycin B was first documented in 1993 (PMID: 8514643). Based on a literature review very few articles have been published on (3S)-3-(butan-2-yl)-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0²,⁶.0⁷,¹².0¹⁵,²⁰]Henicosa-1(13),7(12),8,10,15(20),16,18-heptaene-4,14,21-trione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105393D          

 71 76  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 71 76  0  0  0  0  0  0  0  0999 V2000
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 13 55  1  0
 14 56  1  0
 16 57  1  0
 25 58  1  1
 26 59  1  0
 26 60  1  0
 27 61  1  1
 28 62  1  0
 29 63  1  6
 30 64  1  0
 31 65  1  6
 32 66  1  0
 32 67  1  0
 32 68  1  0
 34 69  1  0
 35 70  1  0
 36 71  1  0
M  END


  Mrv1652306242105393D          

 71 76  0  0  0  0            999 V2000
   -0.9353    4.0859   -0.3282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4577    2.7083   -0.6092 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -1.0459   -0.0037   -3.3099 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.0033   -1.0711   -3.2325 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7541   -0.8814   -2.0396 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3907   -1.9688   -1.3854 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8828   -1.8862    0.5214 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7267    0.4569   -0.1456 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5727   -1.0028    1.7086 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4396    0.4193    1.5862 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5858    1.0373    2.0582 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8558    0.2814    1.6583 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2909    0.5749    0.2607 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1837   -0.6333   -0.4750 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4787    1.6037   -0.4597 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5342    0.9863   -1.3012 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8648    2.6547    0.3993 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6588    3.9627    0.2981 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.2874   -2.5288    3.5264 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4956   -0.0649   -2.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7866   -2.1911   -3.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1485   -5.1612   -2.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0853   -4.7789    2.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6762   -0.7798    1.8233 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2676   -3.3001    4.0417 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
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 15 17  2  0  0  0  0
 17 18  1  0  0  0  0
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 19 20  1  0  0  0  0
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 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
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 31 33  1  0  0  0  0
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 37 38  1  0  0  0  0
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 40  5  1  0  0  0  0
 40  9  1  0  0  0  0
 17 10  1  0  0  0  0
 38 18  1  0  0  0  0
 37 22  1  0  0  0  0
 33 25  1  0  0  0  0
  1 41  1  0  0  0  0
  1 42  1  0  0  0  0
  1 43  1  0  0  0  0
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  3 46  1  1  0  0  0
  4 47  1  0  0  0  0
  4 48  1  0  0  0  0
  4 49  1  0  0  0  0
  5 50  1  6  0  0  0
  9 51  1  6  0  0  0
 11 52  1  0  0  0  0
 13 53  1  0  0  0  0
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 25 58  1  1  0  0  0
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 29 63  1  6  0  0  0
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 35 70  1  0  0  0  0
 36 71  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0023000

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=C([H])C(=C1[H])C([H])([H])[H])[C@]1([H])OC(=O)[C@@]([H])(N1C1=C2C(=O)C2=C([H])C([H])=C([H])C(O[C@]3([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(O[H])C3([H])[H])=C2C1=O)[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C30H31NO9/c1-5-13(3)24-30(37)40-29-16-9-12(2)10-17(32)21(16)23-25(31(24)29)28(36)22-15(27(23)35)7-6-8-19(22)39-20-11-18(33)26(34)14(4)38-20/h6-10,13-14,18,20,24,26,29,32-34H,5,11H2,1-4H3/t13-,14-,18+,20-,24-,26-,29-/m0/s1

> <INCHI_KEY>
BSBSCJRAEMDCHC-HVMDWYSDSA-N

> <FORMULA>
C30H31NO9

> <MOLECULAR_WEIGHT>
549.576

> <EXACT_MASS>
549.199881582

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
57.96084183093208

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S)-3-[(2S)-butan-2-yl]-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15,17,19-heptaene-4,14,21-trione

> <ALOGPS_LOGP>
2.77

> <JCHEM_LOGP>
3.838252088333333

> <ALOGPS_LOGS>
-3.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.866968477354774

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.183426894762588

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2528866875223716

> <JCHEM_POLAR_SURFACE_AREA>
142.83

> <JCHEM_REFRACTIVITY>
142.6899

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.25e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S)-3-[(2S)-butan-2-yl]-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15,17,19-heptaene-4,14,21-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 71 76  0  0  0  0  0  0  0  0999 V2000
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   -1.4577    2.7083   -0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3201    3.1603   -2.9378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4145    0.8233   -2.1386 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0459   -0.0037   -3.3099 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.0033   -1.0711   -3.2325 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0853   -4.7789    2.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5908    0.9699    3.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6776    0.5767    2.3609 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6762   -0.7798    1.8233 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3693    0.8409    0.1940 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6554   -1.3770    0.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1741    2.1270   -1.1828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4431    1.4894   -2.1397 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8667    2.8958   -0.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3508    4.6816    1.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4591    4.4537   -0.6935 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7415    3.8019    0.4470 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1538   -0.7610    3.8997 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8609   -2.5044    5.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2676   -3.3001    4.0417 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 31 33  1  0
 23 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 38 39  2  0
 19 40  1  0
 40  5  1  0
 40  9  1  0
 17 10  1  0
 38 18  1  0
 37 22  1  0
 33 25  1  0
  1 41  1  0
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  3 46  1  1
  4 47  1  0
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  5 50  1  6
  9 51  1  6
 11 52  1  0
 13 53  1  0
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 16 57  1  0
 25 58  1  1
 26 59  1  0
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 31 65  1  6
 32 66  1  0
 32 67  1  0
 32 68  1  0
 34 69  1  0
 35 70  1  0
 36 71  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.935   4.086  -0.328  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.458   2.708  -0.609  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.852   2.101  -1.867  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.320   3.160  -2.938  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.415   0.823  -2.139  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.046  -0.004  -3.310  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.199   0.069  -4.181  0.00  0.00           O+0
HETATM    8  O   UNK     0      -2.003  -1.071  -3.232  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.754  -0.881  -2.040  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.391  -1.969  -1.385  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.484  -2.541  -2.047  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.218  -3.556  -1.493  0.00  0.00           C+0
HETATM   13  C   UNK     0      -6.396  -4.166  -2.208  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.857  -4.016  -0.244  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.774  -3.478   0.450  0.00  0.00           C+0
HETATM   16  O   UNK     0      -3.543  -4.045   1.682  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.071  -2.474  -0.132  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.883  -1.886   0.521  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.176  -0.900  -0.111  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.108  -0.420   0.468  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.727   0.457  -0.146  0.00  0.00           O+0
HETATM   22  C   UNK     0       0.573  -1.003   1.709  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.780  -0.564   2.291  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.440   0.419   1.586  0.00  0.00           O+0
HETATM   25  C   UNK     0       3.586   1.037   2.058  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.856   0.281   1.658  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.291   0.575   0.261  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.184  -0.633  -0.475  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.479   1.604  -0.460  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.534   0.986  -1.301  0.00  0.00           O+0
HETATM   31  C   UNK     0       3.865   2.655   0.399  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.659   3.963   0.298  0.00  0.00           C+0
HETATM   33  O   UNK     0       3.743   2.364   1.730  0.00  0.00           O+0
HETATM   34  C   UNK     0       2.225  -1.107   3.478  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.484  -2.106   4.122  0.00  0.00           C+0
HETATM   36  C   UNK     0       0.287  -2.529   3.526  0.00  0.00           C+0
HETATM   37  C   UNK     0      -0.131  -1.970   2.348  0.00  0.00           C+0
HETATM   38  C   UNK     0      -1.399  -2.446   1.760  0.00  0.00           C+0
HETATM   39  O   UNK     0      -1.982  -3.319   2.389  0.00  0.00           O+0
HETATM   40  N   UNK     0      -1.638  -0.273  -1.267  0.00  0.00           N+0
HETATM   41  H   UNK     0      -1.739   4.623   0.260  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.643   4.664  -1.208  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.097   3.986   0.391  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.304   2.083   0.283  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.584   2.754  -0.716  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.233   2.226  -1.757  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.455   2.638  -3.899  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.466   3.846  -3.037  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.199   3.696  -2.607  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.516   1.112  -2.484  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.496  -0.065  -2.333  0.00  0.00           H+0
HETATM   52  H   UNK     0      -4.787  -2.191  -3.034  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.149  -5.161  -2.601  0.00  0.00           H+0
HETATM   54  H   UNK     0      -7.238  -4.199  -1.456  0.00  0.00           H+0
HETATM   55  H   UNK     0      -6.705  -3.461  -2.991  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.420  -4.818   0.215  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.085  -4.779   2.082  0.00  0.00           H+0
HETATM   58  H   UNK     0       3.591   0.970   3.183  0.00  0.00           H+0
HETATM   59  H   UNK     0       5.678   0.577   2.361  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.676  -0.780   1.823  0.00  0.00           H+0
HETATM   61  H   UNK     0       6.369   0.841   0.194  0.00  0.00           H+0
HETATM   62  H   UNK     0       5.655  -1.377   0.001  0.00  0.00           H+0
HETATM   63  H   UNK     0       5.174   2.127  -1.183  0.00  0.00           H+0
HETATM   64  H   UNK     0       3.443   1.489  -2.140  0.00  0.00           H+0
HETATM   65  H   UNK     0       2.867   2.896  -0.041  0.00  0.00           H+0
HETATM   66  H   UNK     0       4.351   4.682   1.089  0.00  0.00           H+0
HETATM   67  H   UNK     0       4.459   4.454  -0.694  0.00  0.00           H+0
HETATM   68  H   UNK     0       5.742   3.802   0.447  0.00  0.00           H+0
HETATM   69  H   UNK     0       3.154  -0.761   3.900  0.00  0.00           H+0
HETATM   70  H   UNK     0       1.861  -2.504   5.050  0.00  0.00           H+0
HETATM   71  H   UNK     0      -0.268  -3.300   4.042  0.00  0.00           H+0
CONECT    1    2   41   42   43                                             
CONECT    2    1    3   44   45                                             
CONECT    3    2    4    5   46                                             
CONECT    4    3   47   48   49                                             
CONECT    5    3    6   40   50                                             
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   40   51                                             
CONECT   10    9   11   17                                                  
CONECT   11   10   12   52                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   53   54   55                                             
CONECT   14   12   15   56                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15   57                                                       
CONECT   17   15   18   10                                                  
CONECT   18   17   19   38                                                  
CONECT   19   18   20   40                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   37                                                  
CONECT   23   22   24   34                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   33   58                                             
CONECT   26   25   27   59   60                                             
CONECT   27   26   28   29   61                                             
CONECT   28   27   62                                                       
CONECT   29   27   30   31   63                                             
CONECT   30   29   64                                                       
CONECT   31   29   32   33   65                                             
CONECT   32   31   66   67   68                                             
CONECT   33   31   25                                                       
CONECT   34   23   35   69                                                  
CONECT   35   34   36   70                                                  
CONECT   36   35   37   71                                                  
CONECT   37   36   38   22                                                  
CONECT   38   37   39   18                                                  
CONECT   39   38                                                            
CONECT   40   19    5    9                                                  
CONECT   41    1                                                            
CONECT   42    1                                                            
CONECT   43    1                                                            
CONECT   44    2                                                            
CONECT   45    2                                                            
CONECT   46    3                                                            
CONECT   47    4                                                            
CONECT   48    4                                                            
CONECT   49    4                                                            
CONECT   50    5                                                            
CONECT   51    9                                                            
CONECT   52   11                                                            
CONECT   53   13                                                            
CONECT   54   13                                                            
CONECT   55   13                                                            
CONECT   56   14                                                            
CONECT   57   16                                                            
CONECT   58   25                                                            
CONECT   59   26                                                            
CONECT   60   26                                                            
CONECT   61   27                                                            
CONECT   62   28                                                            
CONECT   63   29                                                            
CONECT   64   30                                                            
CONECT   65   31                                                            
CONECT   66   32                                                            
CONECT   67   32                                                            
CONECT   68   32                                                            
CONECT   69   34                                                            
CONECT   70   35                                                            
CONECT   71   36                                                            
MASTER        0    0    0    0    0    0    0    0   71    0  152    0
END

RDKit          3D

71 76  0  0  0  0  0  0  0  0999 V2000
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   -1.4577    2.7083   -0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8516    2.1007   -1.8668 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3201    3.1603   -2.9378 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.0459   -0.0037   -3.3099 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1994    0.0686   -4.1809 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033   -1.0711   -3.2325 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7541   -0.8814   -2.0396 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3907   -1.9688   -1.3854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4844   -2.5405   -2.0470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2185   -3.5556   -1.4927 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3961   -4.1658   -2.2075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8566   -4.0161   -0.2437 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7741   -3.4781    0.4502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5429   -4.0447    1.6824 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1756   -0.9001   -0.1106 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1079   -0.4202    0.4681 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8648    2.6547    0.3993 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6588    3.9627    0.2981 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7432    2.3639    1.7305 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2246   -1.1072    3.4776 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4838   -2.1064    4.1221 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2874   -2.5288    3.5264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1305   -1.9702    2.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3991   -2.4461    1.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9824   -3.3194    2.3895 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6380   -0.2726   -1.2670 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7392    4.6226    0.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6428    4.6642   -1.2079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0969    3.9859    0.3914 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3036    2.0835    0.2826 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4658    3.8461   -3.0366 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1987    3.6958   -2.6065 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7866   -2.1911   -3.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1485   -5.1612   -2.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2382   -4.1995   -1.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7049   -3.4606   -2.9911 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4195   -4.8182    0.2150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0853   -4.7789    2.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5908    0.9699    3.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6776    0.5767    2.3609 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6762   -0.7798    1.8233 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3693    0.8409    0.1940 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6554   -1.3770    0.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1741    2.1270   -1.1828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4431    1.4894   -2.1397 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8667    2.8958   -0.0412 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3508    4.6816    1.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4591    4.4537   -0.6935 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7415    3.8019    0.4470 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1538   -0.7610    3.8997 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8609   -2.5044    5.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2676   -3.3001    4.0417 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 31 33  1  0
 23 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 38 39  2  0
 19 40  1  0
 40  5  1  0
 40  9  1  0
 17 10  1  0
 38 18  1  0
 37 22  1  0
 33 25  1  0
  1 41  1  0
  1 42  1  0
  1 43  1  0
  2 44  1  0
  2 45  1  0
  3 46  1  1
  4 47  1  0
  4 48  1  0
  4 49  1  0
  5 50  1  6
  9 51  1  6
 11 52  1  0
 13 53  1  0
 13 54  1  0
 13 55  1  0
 14 56  1  0
 16 57  1  0
 25 58  1  1
 26 59  1  0
 26 60  1  0
 27 61  1  1
 28 62  1  0
 29 63  1  6
 30 64  1  0
 31 65  1  6
 32 66  1  0
 32 67  1  0
 32 68  1  0
 34 69  1  0
 35 70  1  0
 36 71  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₀H₃₁NO₉

Average Mass

549.5760 Da

Monoisotopic Mass

549.19988 Da

IUPAC Name

(3S,6S)-3-[(2S)-butan-2-yl]-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15,17,19-heptaene-4,14,21-trione

Traditional Name

CAS Registry Number

Not Available

SMILES

CCC(C)[C@@H]1N2C(OC1=O)C1=CC(C)=CC(O)=C1C1=C2C(=O)C2=C(C=CC=C2O[C@H]2C[C@@H](O)[C@@H](O)[C@H](C)O2)C1=O

InChI Identifier

InChI=1S/C30H31NO9/c1-5-13(3)24-30(37)40-29-16-9-12(2)10-17(32)21(16)23-25(31(24)29)28(36)22-15(27(23)35)7-6-8-19(22)39-20-11-18(33)26(34)14(4)38-20/h6-10,13-14,18,20,24,26,29,32-34H,5,11H2,1-4H3/t13?,14-,18+,20-,24-,26-,29?/m0/s1

InChI Key

BSBSCJRAEMDCHC-HVMDWYSDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces bingchenggensis	LOTUS Database	35616633
Streptomyces venezuelae	NPAtlas	8514643

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.77	ALOGPS
logP	3.84	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	8.18	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	142.83 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	142.69 m³·mol⁻¹	ChemAxon
Polarizability	57.96 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA008663

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437280

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71657832

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Doull JL, Ayer SW, Singh AK, Thibault P: Production of a novel polyketide antibiotic, jadomycin B, by Streptomyces venezuelae following heat shock. J Antibiot (Tokyo). 1993 May;46(5):869-71. doi: 10.7164/antibiotics.46.869. [PubMed:8514643 ]

Showing NP-Card for Jadomycin B (NP0023000)

MOL for NP0023000 (Jadomycin B)

3D MOL for NP0023000 (Jadomycin B)

3D SDF for NP0023000 (Jadomycin B)

3D-SDF for NP0023000 (Jadomycin B)

PDB for NP0023000 (Jadomycin B)

3D PDB for NP0023000 (Jadomycin B)

SMILES for NP0023000 (Jadomycin B)

INCHI for NP0023000 (Jadomycin B)

Structure for NP0023000 (Jadomycin B)

3D Structure for NP0023000 (Jadomycin B)