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Record Information
Version2.0
Created at2021-01-06 08:03:04 UTC
Updated at2021-07-15 17:40:16 UTC
NP-MRD IDNP0022893
Secondary Accession NumbersNone
Natural Product Identification
Common NameVicenistatin
Provided ByNPAtlasNPAtlas Logo
Description Vicenistatin is found in Streptomyces and Streptomyces sp. HC34. Vicenistatin was first documented in 1993 (PMID: 8360102). Based on a literature review very few articles have been published on (3Z,5Z,10Z,13Z,15Z)-8-{[(2R,4S,5S,6R)-4-hydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-7,11,13,19-tetramethyl-1-azacycloicosa-1,3,5,10,13,15-hexaen-2-ol.
Structure
Thumb
Synonyms
ValueSource
(3E,5E,15E)-7,11,13,19-Tetramethyl-8-(4-methylamino-2,4,6-trideoxy-b-D-ribo-hexopyranosyloxy)-1-azacycloicosa-3,5,10,13,15-penten-2-oneGenerator
(3E,5E,15E)-7,11,13,19-Tetramethyl-8-(4-methylamino-2,4,6-trideoxy-β-D-ribo-hexopyranosyloxy)-1-azacycloicosa-3,5,10,13,15-penten-2-oneGenerator
Chemical FormulaC30H48N2O4
Average Mass500.7240 Da
Monoisotopic Mass500.36141 Da
IUPAC Name(3Z,5Z,7S,8S,10Z,13Z,15Z,19S)-8-{[(2R,4S,5S,6R)-4-hydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-7,11,13,19-tetramethyl-1-azacycloicosa-3,5,10,13,15-pentaen-2-one
Traditional Name(3Z,5Z,7S,8S,10Z,13Z,15Z,19S)-8-{[(2R,4S,5S,6R)-4-hydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-7,11,13,19-tetramethyl-1-azacycloicosa-3,5,10,13,15-pentaen-2-one
CAS Registry NumberNot Available
SMILES
CN[C@H]1[C@@H](O)C[C@H](OC2C\C=C(C)/C\C(C)=C/C=C\CCC(C)CNC(=O)\C=C/C=C\C2C)O[C@@H]1C
InChI Identifier
InChI=1S/C30H48N2O4/c1-21-12-8-7-9-13-23(3)20-32-28(34)15-11-10-14-24(4)27(17-16-22(2)18-21)36-29-19-26(33)30(31-6)25(5)35-29/h7-8,10-12,14-16,23-27,29-31,33H,9,13,17-20H2,1-6H3,(H,32,34)/b8-7-,14-10-,15-11-,21-12-,22-16-/t23?,24?,25-,26+,27?,29+,30-/m1/s1
InChI KeyFINGADBUNZWVLV-HBCVBPGLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces sp. HC34Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.49ALOGPS
logP4.97ChemAxon
logS-5.6ALOGPS
pKa (Strongest Acidic)14.35ChemAxon
pKa (Strongest Basic)9.41ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area79.82 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity151.8 m³·mol⁻¹ChemAxon
Polarizability58.96 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA017222
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101653004
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Shindo K, Kamishohara M, Odagawa A, Matsuoka M, Kawai H: Vicenistatin, a novel 20-membered macrocyclic lactam antitumor antibiotic. J Antibiot (Tokyo). 1993 Jul;46(7):1076-81. doi: 10.7164/antibiotics.46.1076. [PubMed:8360102 ]