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Record Information
Version1.0
Created at2021-01-06 08:01:05 UTC
Updated at2021-07-15 17:40:10 UTC
NP-MRD IDNP0022854
Secondary Accession NumbersNone
Natural Product Identification
Common NameKistamicin B
Provided ByNPAtlasNPAtlas Logo
Description Kistamicin B is found in Microtetraspora and Microtetraspora parvosata subsp. kistnae nov. (ATCC 55076). It was first documented in 1993 (PMID: 8294237). Based on a literature review very few articles have been published on 34-chloro-25-(3,5-dihydroxyphenyl)-23,26,29,38,44,46,51-heptahydroxy-22-{[1-hydroxy-3-(4-hydroxyphenyl)-2-{[(2-phenylethyl)-C-hydroxycarbonimidoyl]amino}propylidene]amino}-7,36-dioxa-18,24,27,30,43,45-hexaazanonacyclo[29.13.2.2³,⁶.2³²,³⁵.1⁸,¹².1¹³,¹⁷.1³⁷,⁴¹.0¹⁰,²⁸.0¹⁶,²⁰]Tripentaconta-3,5,8,10,12(51),13(50),14,16,19,23,26,29,32,34,37,39,41(47),43,45,48,52-henicosaene-42-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
34-Chloro-25-(3,5-dihydroxyphenyl)-23,26,29,38,44,46,51-heptahydroxy-22-{[1-hydroxy-3-(4-hydroxyphenyl)-2-{[(2-phenylethyl)-C-hydroxycarbonimidoyl]amino}propylidene]amino}-7,36-dioxa-18,24,27,30,43,45-hexaazanonacyclo[29.13.2.2,.2,.1,.1,.1,.0,.0,]tripentaconta-3,5,8,10,12(51),13(50),14,16,19,23,26,29,32,34,37,39,41(47),43,45,48,52-henicosaene-42-carboxylateGenerator
34-Chloro-25-(3,5-dihydroxyphenyl)-23,26,29,38,44,46,51-heptahydroxy-22-{[1-hydroxy-3-(4-hydroxyphenyl)-2-{[(2-phenylethyl)-C-hydroxycarbonimidoyl]amino}propylidene]amino}-7,36-dioxa-18,24,27,30,43,45-hexaazanonacyclo[29.13.2.2³,⁶.2³²,³⁵.1⁸,¹².1¹³,¹⁷.1³⁷,⁴¹.0¹⁰,²⁸.0¹⁶,²⁰]tripentaconta-3,5,8,10,12(51),13(50),14,16,19,23,26,29,32,34,37,39,41(47),43,45,48,52-henicosaene-42-carboxylateGenerator
Chemical FormulaC70H60ClN9O16
Average Mass1318.7500 Da
Monoisotopic Mass1317.38465 Da
IUPAC Name(1S,22R,25S,28R,31R,42S)-48-chloro-25-(3,5-dihydroxyphenyl)-38,51-dihydroxy-22-[(2R)-3-(4-hydroxyphenyl)-2-{[(2-phenylethyl)carbamoyl]amino}propanamido]-23,26,29,44,46-pentaoxo-7,36-dioxa-18,24,27,30,43,45-hexaazanonacyclo[29.13.2.2^{3,6}.2^{32,35}.1^{8,12}.1^{13,17}.1^{37,41}.0^{10,28}.0^{16,20}]tripentaconta-3,5,8(51),9,11,13,15,17(50),19,32,34,37,39,41(47),48,52-hexadecaene-42-carboxylic acid
Traditional Name(1S,22R,25S,28R,31R,42S)-48-chloro-25-(3,5-dihydroxyphenyl)-38,51-dihydroxy-22-[(2R)-3-(4-hydroxyphenyl)-2-{[(2-phenylethyl)carbamoyl]amino}propanamido]-23,26,29,44,46-pentaoxo-7,36-dioxa-18,24,27,30,43,45-hexaazanonacyclo[29.13.2.2^{3,6}.2^{32,35}.1^{8,12}.1^{13,17}.1^{37,41}.0^{10,28}.0^{16,20}]tripentaconta-3,5,8(51),9,11,13,15,17(50),19,32,34,37,39,41(47),48,52-hexadecaene-42-carboxylic acid
CAS Registry NumberNot Available
SMILES
OC(=O)C1NC(=O)C2CC3=CC=C(OC4=CC5=CC(=C4O)C4=CC6=C(C=C4)C(CC(NC(=O)C(CC4=CC=C(O)C=C4)NC(=O)NCCC4=CC=CC=C4)C(=O)NC(C4=CC(O)=CC(O)=C4)C(=O)NC5C(=O)NC(C4=CC(Cl)=C(OC5=CC1=CC=C5O)C=C4)C(=O)N2)=CN6)C=C3
InChI Identifier
InChI=1S/C70H60ClN9O16/c71-49-27-38-12-19-55(49)96-56-30-39(11-18-54(56)84)61(69(92)93)80-64(87)51-22-36-8-15-46(16-9-36)95-57-31-41-26-48(62(57)85)37-10-17-47-42(33-73-50(47)28-37)29-53(74-63(86)52(23-35-6-13-43(81)14-7-35)76-70(94)72-21-20-34-4-2-1-3-5-34)65(88)77-59(40-24-44(82)32-45(83)25-40)67(90)79-60(41)68(91)78-58(38)66(89)75-51/h1-19,24-28,30-33,51-53,58-61,73,81-85H,20-23,29H2,(H,74,86)(H,75,89)(H,77,88)(H,78,91)(H,79,90)(H,80,87)(H,92,93)(H2,72,76,94)
InChI KeyACUGLGSAQKAJRT-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicrotetrasporaNPAtlas
Microtetraspora parvosata subsp. kistnae nov. (ATCC 55076)-
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.73ALOGPS
logP6.28ChemAxon
logS-5.7ALOGPS
pKa (Strongest Acidic)3.34ChemAxon
pKa (Strongest Basic)-5.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count15ChemAxon
Polar Surface Area388.43 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity345.22 m³·mol⁻¹ChemAxon
Polarizability133.51 ųChemAxon
Number of Rings12ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA007445
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID17288142
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound17748669
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Naruse N, Tenmyo O, Kobaru S, Hatori M, Tomita K, Hamagishi Y, Oki T: New antiviral antibiotics, kistamicins A and B. I. Taxonomy, production, isolation, physico-chemical properties and biological activities. J Antibiot (Tokyo). 1993 Dec;46(12):1804-11. doi: 10.7164/antibiotics.46.1804. [PubMed:8294237 ]