NP-MRD: Showing NP-Card for 6-deoxy-squalestatin H5 (NP0022684)

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Record Information

Version

2.0

Created at

2021-01-06 07:52:28 UTC

Updated at

2021-07-15 17:39:42 UTC

NP-MRD ID

NP0022684

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-deoxy-squalestatin H5

Provided By

NPAtlas

Description

6-deoxy-squalestatin H5 is found in Phoma sp. C2932. Based on a literature review very few articles have been published on 6-deoxy-squalestatin H5.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105363D          

 61 63  0  0  0  0            999 V2000
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    1.3613    0.2174    0.5048 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2755    0.8711   -0.1105 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 61 63  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242105363D          

 61 63  0  0  0  0            999 V2000
    1.8538    1.2019    1.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3613    0.2174    0.5048 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5466    0.8476    0.7561 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6192    1.7959    1.0682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3872    3.0295    1.0337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8859    1.3666    1.4010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2517    0.0048    1.9921 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7297   -0.1177    1.9186 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3331   -1.4434    2.0814 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3430    1.4783    0.4449 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4752    0.6821    2.2250 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3382    2.0753    1.0712 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9972    1.6156    2.0855 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5390   -1.0890   -1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4777    0.0547   -1.9468 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4023   -1.7114    0.3229 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1253   -1.3834   -1.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4930   -2.2074   -1.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3620    0.7992    0.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9464    1.9266   -0.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175    2.3035   -2.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5210    2.2711   -3.0508 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2733    0.8697   -2.0669 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7290   -0.5586   -0.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4604   -0.5652    0.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2001   -0.6108    1.6557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3031   -1.0601   -0.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9294    1.3420   -0.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8296    1.7162    1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9563   -1.8784    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6847   -2.5915   -3.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8408    1.7170   -1.3872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5126   -1.8918    0.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1075    0.8713    2.2558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7376   -0.9720    1.9640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5260    0.5885    2.8995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2748    0.5575    2.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0014   -1.5311    3.0034 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 17 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  1  1  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 26 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 26 33  1  0  0  0  0
 12  7  1  0  0  0  0
 31 15  1  0  0  0  0
 33 15  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  3 37  1  0  0  0  0
  4 38  1  6  0  0  0
  5 39  1  0  0  0  0
  5 40  1  0  0  0  0
  5 41  1  0  0  0  0
  6 42  1  0  0  0  0
  6 43  1  0  0  0  0
  8 44  1  0  0  0  0
  9 45  1  0  0  0  0
 10 46  1  0  0  0  0
 11 47  1  0  0  0  0
 12 48  1  0  0  0  0
 13 49  1  0  0  0  0
 13 50  1  0  0  0  0
 14 51  1  0  0  0  0
 14 52  1  0  0  0  0
 17 53  1  1  0  0  0
 20 54  1  0  0  0  0
 22 55  1  0  0  0  0
 25 56  1  0  0  0  0
 29 57  1  0  0  0  0
 30 58  1  0  0  0  0
 30 59  1  0  0  0  0
 31 60  1  1  0  0  0
 32 61  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022684

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]1([H])O[C@]2(O[C@](C(=O)O[H])(C([H])([H])[C@@]2([H])O[H])[C@]1(O[H])C(=O)O[H])C([H])([H])C([H])([H])C(=C(/[H])[C@]([H])(C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H28O10/c1-13(10-14(2)11-15-6-4-3-5-7-15)8-9-22-16(24)12-21(33-22,19(27)28)23(31,20(29)30)17(32-22)18(25)26/h3-7,10,14,16-17,24,31H,8-9,11-12H2,1-2H3,(H,25,26)(H,27,28)(H,29,30)/b13-10+/t14-,16+,17+,21-,22-,23+/m0/s1

> <INCHI_KEY>
ZYVFCWVERNZCTQ-CZXSIKFVSA-N

> <FORMULA>
C23H28O10

> <MOLECULAR_WEIGHT>
464.467

> <EXACT_MASS>
464.168247102

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
47.01239693166701

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3S,4S,5R,7R)-1-[(3E,5R)-5-benzyl-3-methylhex-3-en-1-yl]-4,7-dihydroxy-2,8-dioxabicyclo[3.2.1]octane-3,4,5-tricarboxylic acid

> <ALOGPS_LOGP>
1.58

> <JCHEM_LOGP>
2.4317014086666653

> <ALOGPS_LOGS>
-3.42

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
4.377243435419792

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5251992121175277

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6193217483112106

> <JCHEM_POLAR_SURFACE_AREA>
170.82

> <JCHEM_REFRACTIVITY>
111.93269999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.78e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S,4S,5R,7R)-1-[(3E,5R)-5-benzyl-3-methylhex-3-en-1-yl]-4,7-dihydroxy-2,8-dioxabicyclo[3.2.1]octane-3,4,5-tricarboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 61 63  0  0  0  0  0  0  0  0999 V2000
    1.8538    1.2019    1.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3613    0.2174    0.5048 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0743   -0.3139   -0.4374 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4502   -0.1188   -0.8102 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2179   -1.4795   -0.7272 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2755    0.8711   -0.1105 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6956    0.8652   -0.6627 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9867    1.6653   -1.7293 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2762    1.6503   -2.2157 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2530    0.8623   -1.6592 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9611    0.0536   -0.5819 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6530    0.0724   -0.0928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0870   -0.2266    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0109    0.9478    0.4388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4347    0.4265    0.5535 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5859   -0.5078   -0.4599 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8221   -1.1170   -0.4753 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9643   -1.8078   -1.7893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0118   -2.4493   -2.0673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9703   -1.7834   -2.7608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8833   -0.0384   -0.4282 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7120    0.7409   -1.5681 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2378   -0.5677   -0.3769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0526   -0.2977   -1.2825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6431   -1.3725    0.6672 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5466    0.8476    0.7561 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6192    1.7959    1.0682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3872    3.0295    1.0337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8859    1.3666    1.4010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2517    0.0048    1.9921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7297   -0.1177    1.9186 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3331   -1.4434    2.0814 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3430    1.4783    0.4449 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4752    0.6821    2.2250 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3382    2.0753    1.0712 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9972    1.6156    2.0855 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5390   -1.0890   -1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4777    0.0547   -1.9468 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4023   -1.7114    0.3229 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1253   -1.3834   -1.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4930   -2.2074   -1.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3620    0.7992    0.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9464    1.9266   -0.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175    2.3035   -2.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5210    2.2711   -3.0508 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2733    0.8697   -2.0669 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7290   -0.5586   -0.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4604   -0.5652    0.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2001   -0.6108    1.6557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3031   -1.0601   -0.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9294    1.3420   -0.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8296    1.7162    1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9563   -1.8784    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6847   -2.5915   -3.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8408    1.7170   -1.3872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5126   -1.8918    0.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1075    0.8713    2.2558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7376   -0.9720    1.9640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5260    0.5885    2.8995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2748    0.5575    2.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0014   -1.5311    3.0034 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  2 13  1  0
 13 14  1  0
 15 14  1  1
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 17 21  1  0
 21 22  1  6
 21 23  1  0
 23 24  2  0
 23 25  1  0
 21 26  1  0
 26 27  1  1
 27 28  2  0
 27 29  1  0
 26 30  1  0
 30 31  1  0
 31 32  1  0
 26 33  1  0
 12  7  1  0
 31 15  1  0
 33 15  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  4 38  1  6
  5 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  6 43  1  0
  8 44  1  0
  9 45  1  0
 10 46  1  0
 11 47  1  0
 12 48  1  0
 13 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 17 53  1  1
 20 54  1  0
 22 55  1  0
 25 56  1  0
 29 57  1  0
 30 58  1  0
 30 59  1  0
 31 60  1  1
 32 61  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       1.854   1.202   1.460  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.361   0.217   0.505  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.074  -0.314  -0.437  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.450  -0.119  -0.810  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.218  -1.480  -0.727  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.276   0.871  -0.111  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.696   0.865  -0.663  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.987   1.665  -1.729  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.276   1.650  -2.216  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.253   0.862  -1.659  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.961   0.054  -0.582  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.653   0.072  -0.093  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.087  -0.227   0.611  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.011   0.948   0.439  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.435   0.427   0.554  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.586  -0.508  -0.460  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.822  -1.117  -0.475  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.964  -1.808  -1.789  0.00  0.00           C+0
HETATM   19  O   UNK     0      -5.012  -2.449  -2.067  0.00  0.00           O+0
HETATM   20  O   UNK     0      -2.970  -1.783  -2.761  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.883  -0.038  -0.428  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.712   0.741  -1.568  0.00  0.00           O+0
HETATM   23  C   UNK     0      -6.238  -0.568  -0.377  0.00  0.00           C+0
HETATM   24  O   UNK     0      -7.053  -0.298  -1.283  0.00  0.00           O+0
HETATM   25  O   UNK     0      -6.643  -1.373   0.667  0.00  0.00           O+0
HETATM   26  C   UNK     0      -4.547   0.848   0.756  0.00  0.00           C+0
HETATM   27  C   UNK     0      -5.619   1.796   1.068  0.00  0.00           C+0
HETATM   28  O   UNK     0      -5.387   3.030   1.034  0.00  0.00           O+0
HETATM   29  O   UNK     0      -6.886   1.367   1.401  0.00  0.00           O+0
HETATM   30  C   UNK     0      -4.252   0.005   1.992  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.730  -0.118   1.919  0.00  0.00           C+0
HETATM   32  O   UNK     0      -2.333  -1.443   2.081  0.00  0.00           O+0
HETATM   33  O   UNK     0      -3.343   1.478   0.445  0.00  0.00           O+0
HETATM   34  H   UNK     0       2.475   0.682   2.225  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.338   2.075   1.071  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.997   1.616   2.086  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.539  -1.089  -1.121  0.00  0.00           H+0
HETATM   38  H   UNK     0       3.478   0.055  -1.947  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.402  -1.711   0.323  0.00  0.00           H+0
HETATM   40  H   UNK     0       5.125  -1.383  -1.353  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.493  -2.207  -1.141  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.362   0.799   0.979  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.946   1.927  -0.359  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.218   2.304  -2.189  0.00  0.00           H+0
HETATM   45  H   UNK     0       7.521   2.271  -3.051  0.00  0.00           H+0
HETATM   46  H   UNK     0       9.273   0.870  -2.067  0.00  0.00           H+0
HETATM   47  H   UNK     0       8.729  -0.559  -0.153  0.00  0.00           H+0
HETATM   48  H   UNK     0       6.460  -0.565   0.743  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.200  -0.611   1.656  0.00  0.00           H+0
HETATM   50  H   UNK     0      -0.303  -1.060  -0.073  0.00  0.00           H+0
HETATM   51  H   UNK     0      -0.929   1.342  -0.613  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.830   1.716   1.188  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.956  -1.878   0.305  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.685  -2.591  -3.293  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.841   1.717  -1.387  0.00  0.00           H+0
HETATM   56  H   UNK     0      -7.513  -1.892   0.671  0.00  0.00           H+0
HETATM   57  H   UNK     0      -7.107   0.871   2.256  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.738  -0.972   1.964  0.00  0.00           H+0
HETATM   59  H   UNK     0      -4.526   0.589   2.900  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.275   0.558   2.680  0.00  0.00           H+0
HETATM   61  H   UNK     0      -2.001  -1.531   3.003  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3   13                                                  
CONECT    3    2    4   37                                                  
CONECT    4    3    5    6   38                                             
CONECT    5    4   39   40   41                                             
CONECT    6    4    7   42   43                                             
CONECT    7    6    8   12                                                  
CONECT    8    7    9   44                                                  
CONECT    9    8   10   45                                                  
CONECT   10    9   11   46                                                  
CONECT   11   10   12   47                                                  
CONECT   12   11    7   48                                                  
CONECT   13    2   14   49   50                                             
CONECT   14   13   15   51   52                                             
CONECT   15   14   16   31   33                                             
CONECT   16   15   17                                                       
CONECT   17   16   18   21   53                                             
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   54                                                       
CONECT   21   17   22   23   26                                             
CONECT   22   21   55                                                       
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   56                                                       
CONECT   26   21   27   30   33                                             
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   57                                                       
CONECT   30   26   31   58   59                                             
CONECT   31   30   32   15   60                                             
CONECT   32   31   61                                                       
CONECT   33   26   15                                                       
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    3                                                            
CONECT   38    4                                                            
CONECT   39    5                                                            
CONECT   40    5                                                            
CONECT   41    5                                                            
CONECT   42    6                                                            
CONECT   43    6                                                            
CONECT   44    8                                                            
CONECT   45    9                                                            
CONECT   46   10                                                            
CONECT   47   11                                                            
CONECT   48   12                                                            
CONECT   49   13                                                            
CONECT   50   13                                                            
CONECT   51   14                                                            
CONECT   52   14                                                            
CONECT   53   17                                                            
CONECT   54   20                                                            
CONECT   55   22                                                            
CONECT   56   25                                                            
CONECT   57   29                                                            
CONECT   58   30                                                            
CONECT   59   30                                                            
CONECT   60   31                                                            
CONECT   61   32                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  126    0
END

RDKit          3D

61 63  0  0  0  0  0  0  0  0999 V2000
    1.8538    1.2019    1.4599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3613    0.2174    0.5048 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0743   -0.3139   -0.4374 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4502   -0.1188   -0.8102 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2179   -1.4795   -0.7272 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2755    0.8711   -0.1105 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6956    0.8652   -0.6627 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9867    1.6653   -1.7293 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2762    1.6503   -2.2157 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2530    0.8623   -1.6592 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9611    0.0536   -0.5819 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6530    0.0724   -0.0928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0870   -0.2266    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0109    0.9478    0.4388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4347    0.4265    0.5535 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5859   -0.5078   -0.4599 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8221   -1.1170   -0.4753 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9643   -1.8078   -1.7893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0118   -2.4493   -2.0673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9703   -1.7834   -2.7608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8833   -0.0384   -0.4282 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7120    0.7409   -1.5681 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2378   -0.5677   -0.3769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0526   -0.2977   -1.2825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6431   -1.3725    0.6672 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5466    0.8476    0.7561 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6192    1.7959    1.0682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3872    3.0295    1.0337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8859    1.3666    1.4010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2517    0.0048    1.9921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7297   -0.1177    1.9186 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3331   -1.4434    2.0814 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3430    1.4783    0.4449 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4752    0.6821    2.2250 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3382    2.0753    1.0712 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9972    1.6156    2.0855 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5390   -1.0890   -1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4777    0.0547   -1.9468 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4023   -1.7114    0.3229 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1253   -1.3834   -1.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4930   -2.2074   -1.1407 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3620    0.7992    0.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9464    1.9266   -0.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175    2.3035   -2.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5210    2.2711   -3.0508 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2733    0.8697   -2.0669 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7290   -0.5586   -0.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4604   -0.5652    0.7434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2001   -0.6108    1.6557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3031   -1.0601   -0.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9294    1.3420   -0.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8296    1.7162    1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9563   -1.8784    0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6847   -2.5915   -3.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8408    1.7170   -1.3872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5126   -1.8918    0.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1075    0.8713    2.2558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7376   -0.9720    1.9640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5260    0.5885    2.8995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2748    0.5575    2.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0014   -1.5311    3.0034 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  2 13  1  0
 13 14  1  0
 15 14  1  1
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 17 21  1  0
 21 22  1  6
 21 23  1  0
 23 24  2  0
 23 25  1  0
 21 26  1  0
 26 27  1  1
 27 28  2  0
 27 29  1  0
 26 30  1  0
 30 31  1  0
 31 32  1  0
 26 33  1  0
 12  7  1  0
 31 15  1  0
 33 15  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  4 38  1  6
  5 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  6 43  1  0
  8 44  1  0
  9 45  1  0
 10 46  1  0
 11 47  1  0
 12 48  1  0
 13 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 17 53  1  1
 20 54  1  0
 22 55  1  0
 25 56  1  0
 29 57  1  0
 30 58  1  0
 30 59  1  0
 31 60  1  1
 32 61  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(1S,3S,4S,5R,7R)-1-[(3E)-5-Benzyl-3-methylhex-3-en-1-yl]-4,7-dihydroxy-2,8-dioxabicyclo[3.2.1]octane-3,4,5-tricarboxylate	Generator

Chemical Formula

C₂₃H₂₈O₁₀

Average Mass

464.4670 Da

Monoisotopic Mass

464.16825 Da

IUPAC Name

(1S,3S,4S,5R,7R)-1-[(3E,5R)-5-benzyl-3-methylhex-3-en-1-yl]-4,7-dihydroxy-2,8-dioxabicyclo[3.2.1]octane-3,4,5-tricarboxylic acid

Traditional Name

(1S,3S,4S,5R,7R)-1-[(3E,5R)-5-benzyl-3-methylhex-3-en-1-yl]-4,7-dihydroxy-2,8-dioxabicyclo[3.2.1]octane-3,4,5-tricarboxylic acid

CAS Registry Number

Not Available

SMILES

CC(CC1=CC=CC=C1)\C=C(/C)CC[C@]12O[C@@](C[C@H]1O)(C(O)=O)[C@@](O)([C@H](O2)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C23H28O10/c1-13(10-14(2)11-15-6-4-3-5-7-15)8-9-22-16(24)12-21(33-22,19(27)28)23(31,20(29)30)17(32-22)18(25)26/h3-7,10,14,16-17,24,31H,8-9,11-12H2,1-2H3,(H,25,26)(H,27,28)(H,29,30)/b13-10+/t14?,16-,17-,21+,22+,23-/m1/s1

InChI Key

ZYVFCWVERNZCTQ-CZXSIKFVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Phoma sp. C2932	NPAtlas	8071119

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.58	ALOGPS
logP	2.43	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	3.53	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	170.82 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	111.93 m³·mol⁻¹	ChemAxon
Polarizability	47.01 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA017869

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439829

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588070

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for 6-deoxy-squalestatin H5 (NP0022684)

MOL for NP0022684 (6-deoxy-squalestatin H5)

3D MOL for NP0022684 (6-deoxy-squalestatin H5)

3D SDF for NP0022684 (6-deoxy-squalestatin H5)

3D-SDF for NP0022684 (6-deoxy-squalestatin H5)

PDB for NP0022684 (6-deoxy-squalestatin H5)

3D PDB for NP0022684 (6-deoxy-squalestatin H5)

SMILES for NP0022684 (6-deoxy-squalestatin H5)

INCHI for NP0022684 (6-deoxy-squalestatin H5)

Structure for NP0022684 (6-deoxy-squalestatin H5)

3D Structure for NP0022684 (6-deoxy-squalestatin H5)