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Record Information
Version2.0
Created at2021-01-06 07:51:46 UTC
Updated at2024-09-12 19:47:07 UTC
NP-MRD IDNP0022672
Secondary Accession NumbersNone
Natural Product Identification
Common NameNaphthomycin A
Provided ByNPAtlasNPAtlas Logo
Description Naphthomycin A is found in Streptomyces. Naphthomycin A was first documented in 2013 (PMID: 23420111). Based on a literature review a small amount of articles have been published on Naphthomycin A (PMID: 28406643) (PMID: 38694805).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC40H46ClNO9
Average Mass720.2600 Da
Monoisotopic Mass719.28611 Da
IUPAC Name(7E,9S,10S,11S,12E,14S,16E,20S,21S,22E,24Z,26Z)-31-chloro-4,10,14,20-tetrahydroxy-3,7,9,11,17,21,27-heptamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,12,16,22,24,26,30-decaene-6,18,28,32,34-pentone
Traditional Name(7E,9S,10S,11S,12E,14S,16E,20S,21S,22E,24Z,26Z)-31-chloro-4,10,14,20-tetrahydroxy-3,7,9,11,17,21,27-heptamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,12,16,22,24,26,30-decaene-6,18,28,32,34-pentone
CAS Registry NumberNot Available
SMILES
[H]OC1=C2C3=C(C([H])=C1C([H])([H])[H])C(=O)C(N([H])C(=O)\C(=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])\[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C(=O)\C(=C([H])\C([H])([H])[C@]([H])(O[H])\C([H])=C([H])\[C@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(\C([H])=C(\C2=O)C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])=C(Cl)C3=O
InChI Identifier
InChI=1/C40H46ClNO9/c1-20-11-9-8-10-12-23(4)40(51)42-34-33(41)39(50)31-28(38(34)49)18-26(7)37(48)32(31)36(47)25(6)17-24(5)35(46)22(3)14-16-27(43)15-13-21(2)30(45)19-29(20)44/h8-14,16-18,20,22,24,27,29,35,43-44,46,48H,15,19H2,1-7H3,(H,42,51)/b10-8-,11-9+,16-14+,21-13+,23-12-,25-17+/t20-,22-,24-,27-,29-,35-/s2
InChI KeyAXEGRHYJHHPVDH-DTSHVWKONA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolactams
Sub ClassNot Available
Direct ParentMacrolactams
Alternative Parents
Substituents
  • Macrolactam
  • Naphthoquinone
  • Naphthalene
  • Quinone
  • Aryl ketone
  • Phenol
  • Benzenoid
  • Alpha-haloketone
  • Alpha-chloroketone
  • Vinylogous halide
  • Vinylogous amide
  • Vinylogous acid
  • Carboxamide group
  • Ketone
  • Lactam
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Cyclic ketone
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Azacycle
  • Polyol
  • Haloalkene
  • Chloroalkene
  • Vinyl halide
  • Vinyl chloride
  • Alcohol
  • Organohalogen compound
  • Organic oxide
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organochloride
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.62ChemAxon
pKa (Strongest Acidic)5.45ChemAxon
pKa (Strongest Basic)-0.75ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area178.3 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity205.59 m³·mol⁻¹ChemAxon
Polarizability78.17 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA000326
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNaphthomycin A
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Son S, Ko SK, Jang M, Lee JK, Kwon MC, Kang DH, Ryoo IJ, Lee JS, Hong YS, Kim BY, Jang JH, Ahn JS: Polyketides and Anthranilic Acid Possessing 6-Deoxy-alpha-l-talopyranose from a Streptomyces Species. J Nat Prod. 2017 May 26;80(5):1378-1386. doi: 10.1021/acs.jnatprod.6b01059. Epub 2017 Apr 13. [PubMed:28406643 ]
  2. Kaewkla O, Perkins M, Thamchaipenet A, Saijuntha W, Sukpanoa S, Suriyachadkun C, Chamroensaksri N, Chumroenphat T, Franco CMM: Description of Streptomyces naphthomycinicus sp. nov., an endophytic actinobacterium producing naphthomycin A and its genome insight for discovering bioactive compounds. Front Microbiol. 2024 Apr 17;15:1353511. doi: 10.3389/fmicb.2024.1353511. eCollection 2024. [PubMed:38694805 ]
  3. Liu H, Xiao L, Wei J, Schmitz JC, Liu M, Wang C, Cheng L, Wu N, Chen L, Zhang Y, Lin X: Identification of Streptomyces sp. nov. WH26 producing cytotoxic compounds isolated from marine solar saltern in China. World J Microbiol Biotechnol. 2013 Jul;29(7):1271-8. doi: 10.1007/s11274-013-1290-8. Epub 2013 Feb 19. [PubMed:23420111 ]