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Record Information
Version2.0
Created at2021-01-06 07:50:38 UTC
Updated at2021-07-15 17:39:37 UTC
NP-MRD IDNP0022650
Secondary Accession NumbersNone
Natural Product Identification
Common NameNapsamycin D
Provided ByNPAtlasNPAtlas Logo
Description Napsamycin D is found in Pseudomonas and Streptomyces sp. HIL Y-8211372. Based on a literature review very few articles have been published on Napsamycin D.
Structure
Thumb
Synonyms
ValueSource
2-({[1-({2-[1-(6-hydroxy-1-methyl-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoateGenerator
2-({[1-({2-[1-(6-hydroxy-1-methyl-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoateGenerator
2-({[1-({2-[1-(6-hydroxy-1-methyl-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoic acidGenerator
Chemical FormulaC40H52N8O12S
Average Mass868.9600 Da
Monoisotopic Mass868.34254 Da
IUPAC Name(2S)-2-({[(1S)-1-{[(1R,2R)-1-({[(2Z,4S,5S)-5-(2,4-dioxo-1,3-diazinan-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)-2-{1-[(1S,3R)-6-hydroxy-1-methyl-1,2,3,4-tetrahydroisoquinolin-3-yl]-N-methylformamido}propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
Traditional Name(2S)-2-({[(1S)-1-{[(1R,2R)-1-({[(2Z,4S,5S)-5-(2,4-dioxo-1,3-diazinan-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)-2-{1-[(1S,3R)-6-hydroxy-1-methyl-1,2,3,4-tetrahydroisoquinolin-3-yl]-N-methylformamido}propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=O)NC(CC1=CC(O)=CC=C1)C(O)=O)C(=O)NC(C(C)N(C)C(=O)C1CC2=C(C=CC(O)=C2)C(C)N1)C(=O)N\C=C1\CC(O)C(O1)N1CCC(=O)NC1=O
InChI Identifier
InChI=1S/C40H52N8O12S/c1-20-27-9-8-25(50)16-23(27)17-29(42-20)36(55)47(3)21(2)33(35(54)41-19-26-18-31(51)37(60-26)48-12-10-32(52)45-40(48)59)46-34(53)28(11-13-61-4)43-39(58)44-30(38(56)57)15-22-6-5-7-24(49)14-22/h5-9,14,16,19-21,28-31,33,37,42,49-51H,10-13,15,17-18H2,1-4H3,(H,41,54)(H,46,53)(H,56,57)(H2,43,44,58)(H,45,52,59)/b26-19-
InChI KeyAZGANZVUWUCOGH-XHPQRKPJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PseudomonasNPAtlas
Streptomyces sp. HIL Y-8211372Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.55ALOGPS
logP-3.3ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.25ChemAxon
pKa (Strongest Basic)7.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area288.3 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity219.72 m³·mol⁻¹ChemAxon
Polarizability89.13 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA012755
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00016621
Chemspider ID2301530
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3037899
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References