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Record Information
Version1.0
Created at2021-01-06 07:50:34 UTC
Updated at2021-07-15 17:39:36 UTC
NP-MRD IDNP0022649
Secondary Accession NumbersNone
Natural Product Identification
Common NameNapsamycin C
Provided ByNPAtlasNPAtlas Logo
Description Napsamycin C is found in Pseudomonas. It was first documented in 1994 (PMID: 8040059). Based on a literature review very few articles have been published on 2-({[1-({2-[1-(6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoic acid.
Structure
Thumb
Synonyms
ValueSource
2-({[1-({2-[1-(6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoateGenerator
2-({[1-({2-[1-(6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoateGenerator
2-({[1-({2-[1-(6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl)-N-methylformamido]-1-({[(2Z)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2,5,6-tetrahydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoic acidGenerator
Chemical FormulaC39H50N8O12S
Average Mass854.9300 Da
Monoisotopic Mass854.32689 Da
IUPAC Name(2R)-2-({[(1R)-1-{[(1R,2R)-1-({[(2Z,4R,5S)-5-(2,4-dioxo-1,3-diazinan-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)-2-{1-[(3R)-6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl]-N-methylformamido}propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
Traditional Name(2R)-2-({[(1R)-1-{[(1R,2R)-1-({[(2Z,4R,5S)-5-(2,4-dioxo-1,3-diazinan-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)-2-{1-[(3R)-6-hydroxy-1,2,3,4-tetrahydroisoquinolin-3-yl]-N-methylformamido}propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=O)NC(CC1=CC(O)=CC=C1)C(O)=O)C(=O)NC(C(C)N(C)C(=O)C1CC2=C(CN1)C=CC(O)=C2)C(=O)N\C=C1\CC(O)C(O1)N1CCC(=O)NC1=O
InChI Identifier
InChI=1S/C39H50N8O12S/c1-20(46(2)35(54)28-16-23-15-25(49)8-7-22(23)18-40-28)32(34(53)41-19-26-17-30(50)36(59-26)47-11-9-31(51)44-39(47)58)45-33(52)27(10-12-60-3)42-38(57)43-29(37(55)56)14-21-5-4-6-24(48)13-21/h4-8,13,15,19-20,27-30,32,36,40,48-50H,9-12,14,16-18H2,1-3H3,(H,41,53)(H,45,52)(H,55,56)(H2,42,43,57)(H,44,51,58)/b26-19-
InChI KeyMFEPAAMYDYMBSN-XHPQRKPJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PseudomonasNPAtlas
Species Where Detected
Species NameSourceReference
Streptomyces sp. HIL Y-8211372KNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.24ALOGPS
logP-3.8ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)3.25ChemAxon
pKa (Strongest Basic)7.52ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area288.3 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity215.3 m³·mol⁻¹ChemAxon
Polarizability85.7 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA001280
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID2301529
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3037898
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Chatterjee S, Nadkarni SR, Vijayakumar EK, Patel MV, Ganguli BN, Fehlhaber HW, Vertesy L: Napsamycins, new Pseudomonas active antibiotics of the mureidomycin family from Streptomyces sp. HIL Y-82,11372. J Antibiot (Tokyo). 1994 May;47(5):595-8. doi: 10.7164/antibiotics.47.595. [PubMed:8040059 ]