Np mrd loader

Record Information
Version2.0
Created at2021-01-06 07:45:31 UTC
Updated at2021-07-15 17:39:26 UTC
NP-MRD IDNP0022580
Secondary Accession NumbersNone
Natural Product Identification
Common NamePseudomycin A
Provided ByNPAtlasNPAtlas Logo
Description Pseudomycin A is found in Pseudomonas syringae. Pseudomycin A was first documented in 1991 (PMID: 1791440). Based on a literature review very few articles have been published on Pseudomycin A (PMID: 7957970) (PMID: 11206449) (PMID: 9826192) (PMID: 9237401).
Structure
Thumb
Synonyms
ValueSource
N-(3,4-Dihydroxy-1-oxotetradecyl)-seryl-2,4-diaminobutanoyl-alpha-aspartyl-lysyl-2,4-diaminobutanoyl-allothreonyl-2,3-didehydro-2-aminobutanoyl-threo-3-hydroxy-alpha-aspartyl-4-chloro-threonine, beta1-lactoneMeSH
2-[(9E)-18-(4-Aminobutyl)-15,24-bis(2-aminoethyl)-21-(carboxymethyl)-3-(2-chloro-1-hydroxyethyl)-9-ethylidene-5,8,11,14,17,20,23,26-octahydroxy-12-(1-hydroxyethyl)-2-oxo-27-[(1,3,4-trihydroxytetradecylidene)amino]-1-oxa-4,7,10,13,16,19,22,25-octaazacyclooctacosa-4,7,10,13,16,19,22,25-octaen-6-yl]-2-hydroxyacetateGenerator
Chemical FormulaC51H87ClN12O20
Average Mass1223.7700 Da
Monoisotopic Mass1222.58481 Da
IUPAC Name(2S)-2-[(3S,6S,9E,12R,15R,18S,21S,24R,27R)-18-(4-aminobutyl)-15,24-bis(2-aminoethyl)-21-(carboxymethyl)-3-[(1S)-2-chloro-1-hydroxyethyl]-27-[(3S,4R)-3,4-dihydroxytetradecanamido]-9-ethylidene-12-[(1S)-1-hydroxyethyl]-2,5,8,11,14,17,20,23,26-nonaoxo-1-oxa-4,7,10,13,16,19,22,25-octaazacyclooctacosan-6-yl]-2-hydroxyacetic acid
Traditional Name(S)-[(3S,6S,9E,12R,15R,18S,21S,24R,27R)-18-(4-aminobutyl)-15,24-bis(2-aminoethyl)-21-(carboxymethyl)-3-[(1S)-2-chloro-1-hydroxyethyl]-27-[(3S,4R)-3,4-dihydroxytetradecanamido]-9-ethylidene-12-[(1S)-1-hydroxyethyl]-2,5,8,11,14,17,20,23,26-nonaoxo-1-oxa-4,7,10,13,16,19,22,25-octaazacyclooctacosan-6-yl](hydroxy)acetic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCC(O)C(O)CC(=O)NC1COC(=O)C(NC(=O)C(NC(=O)\C(NC(=O)C(NC(=O)C(CCN)NC(=O)C(CCCCN)NC(=O)C(CC(O)=O)NC(=O)C(CCN)NC1=O)C(C)O)=C/C)C(O)C(O)=O)C(O)CCl
InChI Identifier
InChI=1S/C51H87ClN12O20/c1-4-6-7-8-9-10-11-12-16-33(66)34(67)23-36(69)56-32-25-84-51(83)39(35(68)24-52)63-49(80)40(41(72)50(81)82)64-42(73)27(5-2)57-48(79)38(26(3)65)62-45(76)30(18-21-55)59-43(74)28(15-13-14-19-53)58-46(77)31(22-37(70)71)61-44(75)29(17-20-54)60-47(32)78/h5,26,28-35,38-41,65-68,72H,4,6-25,53-55H2,1-3H3,(H,56,69)(H,57,79)(H,58,77)(H,59,74)(H,60,78)(H,61,75)(H,62,76)(H,63,80)(H,64,73)(H,70,71)(H,81,82)/b27-5+
InChI KeyXDPWWEOIDYYUDN-FZXKJZBHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pseudomonas syringaeNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.1ALOGPS
logP-12ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)3.05ChemAxon
pKa (Strongest Basic)10.32ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area542.01 ŲChemAxon
Rotatable Bond Count28ChemAxon
Refractivity293.95 m³·mol⁻¹ChemAxon
Polarizability123.85 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA014977
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444500
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139587277
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ballio A, Bossa F, Di Giorgio D, Ferranti P, Paci M, Pucci P, Scaloni A, Segre A, Strobel GA: Novel bioactive lipodepsipeptides from Pseudomonas syringae: the pseudomycins. FEBS Lett. 1994 Nov 21;355(1):96-100. doi: 10.1016/0014-5793(94)01179-6. [PubMed:7957970 ]
  2. Rodriguez MJ, Belvo M, Morris R, Zeckner DJ, Current WL, Sachs RK, Zweifel MJ: The synthesis of pseudomycin C' via a novel acid promoted side-chain deacylation of pseudomycin A. Bioorg Med Chem Lett. 2001 Jan 22;11(2):161-4. doi: 10.1016/s0960-894x(00)00613-2. [PubMed:11206449 ]
  3. Coiro VM, Segre AL, Di Nola A, Paci M, Grottesi A, Veglia G, Ballio A: Solution conformation of the Pseudomonas syringae MSU 16H phytotoxic lipodepsipeptide Pseudomycin A determined by computer simulations using distance geometry and molecular dynamics from NMR data. Eur J Biochem. 1998 Oct 15;257(2):449-56. doi: 10.1046/j.1432-1327.1998.2570449.x. [PubMed:9826192 ]
  4. Di Giorgio D, Camoni L, Marchiafava C, Ballio A: Biological activities of pseudomycin A, a lipodepsinonapeptide from Pseudomonas syringae MSU 16H. Phytochemistry. 1997 Aug;45(7):1385-91. doi: 10.1016/s0031-9422(97)00173-8. [PubMed:9237401 ]
  5. Harrison L, Teplow DB, Rinaldi M, Strobel G: Pseudomycins, a family of novel peptides from Pseudomonas syringae possessing broad-spectrum antifungal activity. J Gen Microbiol. 1991 Dec;137(12):2857-65. doi: 10.1099/00221287-137-12-2857. [PubMed:1791440 ]