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Record Information
Version2.0
Created at2021-01-06 07:40:58 UTC
Updated at2021-07-15 17:39:14 UTC
NP-MRD IDNP0022505
Secondary Accession NumbersNone
Natural Product Identification
Common NameCypemycin
Provided ByNPAtlasNPAtlas Logo
Description Cypemycin is found in Streptomyces sp. OH-4156. Cypemycin was first documented in 1993 (PMID: 7802859). Based on a literature review very few articles have been published on 2-{[2-({2-[(2-{[2-({2-[(2-{[(2Z)-2-[({1-[(2E)-2-({2-[({1-[(2E)-2-{[2-(dimethylamino)-1-hydroxypropylidene]amino}but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxypropylidene}amino)but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxybut-2-en-1-ylidene]amino}-1-hydroxy-3-methylbutylidene)amino]-1-hydroxypropylidene}amino)-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene]amino}-1-hydroxy-3-phenylpropylidene)amino]-1-hydroxy-3-methylbutylidene}amino)-1-hydroxy-3-methylpentylidene]amino}-N-{[(2-hydroxy-1-{[(1Z)-1-[(2-methyl-1-{[(2Z)-5,8,11-trihydroxy-9-(2-methylpropyl)-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotrideca-2,4,7,10-tetraen-12-yl]-C-hydroxycarbonimidoyl}butyl)-C-hydroxycarbonimidoyl]prop-1-en-1-yl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]methyl}pentanediimidic acid.
Structure
Thumb
Synonyms
ValueSource
2-{[2-({2-[(2-{[2-({2-[(2-{[(2Z)-2-[({1-[(2E)-2-({2-[({1-[(2E)-2-{[2-(dimethylamino)-1-hydroxypropylidene]amino}but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxypropylidene}amino)but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxybut-2-en-1-ylidene]amino}-1-hydroxy-3-methylbutylidene)amino]-1-hydroxypropylidene}amino)-1-hydroxy-4-(C-hydroxycarbonimidoyl)butylidene]amino}-1-hydroxy-3-phenylpropylidene)amino]-1-hydroxy-3-methylbutylidene}amino)-1-hydroxy-3-methylpentylidene]amino}-N-{[(2-hydroxy-1-{[(1Z)-1-[(2-methyl-1-{[(2Z)-5,8,11-trihydroxy-9-(2-methylpropyl)-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotrideca-2,4,7,10-tetraen-12-yl]-C-hydroxycarbonimidoyl}butyl)-C-hydroxycarbonimidoyl]prop-1-en-1-yl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]methyl}pentanediimidateGenerator
Chemical FormulaC99H154N24O24S
Average Mass2096.5300 Da
Monoisotopic Mass2095.12885 Da
IUPAC Name(2S)-N-[(1R)-1-{[(1S)-1-{[(1S,2S)-1-{[(1S)-3-carbamoyl-1-[({[(1S)-2-hydroxy-1-{[(1Z)-1-{[(1S,2S)-2-methyl-1-{[(2Z,6R,9R,12S)-9-(2-methylpropyl)-5,8,11-trioxo-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotridec-2-en-12-yl]carbamoyl}butyl]carbamoyl}prop-1-en-1-yl]carbamoyl}ethyl]carbamoyl}methyl)carbamoyl]propyl]carbamoyl}-2-methylbutyl]carbamoyl}-2-methylpropyl]carbamoyl}-2-phenylethyl]-2-[(2R)-2-[(2R)-2-[(2Z)-2-{[(2S)-1-[(2E)-2-[(2S)-2-{[(2S)-1-[(2E)-2-[(2S)-2-(dimethylamino)propanamido]but-2-enoyl]pyrrolidin-2-yl]formamido}propanamido]but-2-enoyl]pyrrolidin-2-yl]formamido}but-2-enamido]-3-methylbutanamido]propanamido]pentanediamide
Traditional Name(2S)-N-[(1R)-1-{[(1S)-1-{[(1S,2S)-1-{[(1S)-3-carbamoyl-1-[({[(1S)-2-hydroxy-1-{[(1Z)-1-{[(1S,2S)-1-{[(2Z,6R,9R,12S)-6-isopropyl-9-(2-methylpropyl)-5,8,11-trioxo-1-thia-4,7,10-triazacyclotridec-2-en-12-yl]carbamoyl}-2-methylbutyl]carbamoyl}prop-1-en-1-yl]carbamoyl}ethyl]carbamoyl}methyl)carbamoyl]propyl]carbamoyl}-2-methylbutyl]carbamoyl}-2-methylpropyl]carbamoyl}-2-phenylethyl]-2-[(2R)-2-[(2R)-2-[(2Z)-2-{[(2S)-1-[(2E)-2-[(2S)-2-{[(2S)-1-[(2E)-2-[(2S)-2-(dimethylamino)propanamido]but-2-enoyl]pyrrolidin-2-yl]formamido}propanamido]but-2-enoyl]pyrrolidin-2-yl]formamido}but-2-enamido]-3-methylbutanamido]propanamido]pentanediamide
CAS Registry NumberNot Available
SMILES
CCC(C)C(NC(=O)C(NC(=O)C(CC1=CC=CC=C1)NC(=O)C(CCC(N)=O)NC(=O)C(C)NC(=O)C(NC(=O)C(\NC(=O)C1CCCN1C(=O)C(\NC(=O)C(C)NC(=O)C1CCCN1C(=O)C(\NC(=O)C(C)N(C)C)=C/C)=C/C)=C\C)C(C)C)C(C)C)C(=O)NC(CCC(N)=O)C(=O)NCC(=O)NC(CO)C(=O)N\C(=C/C)C(=O)NC(C(C)CC)C(=O)NC1CS\C=C/NC(=O)C(NC(=O)C(CC(C)C)NC1=O)C(C)C
InChI Identifier
InChI=1S/C99H154N24O24S/c1-22-54(15)78(97(145)115-69-49-148-44-41-102-93(141)75(51(9)10)116-87(135)66(45-50(7)8)113-90(69)138)119-85(133)60(24-3)107-89(137)68(48-124)106-74(127)47-103-83(131)64(37-39-72(100)125)112-96(144)79(55(16)23-2)120-95(143)77(53(13)14)118-88(136)67(46-59-33-29-28-30-34-59)114-86(134)65(38-40-73(101)126)111-81(129)57(18)105-94(142)76(52(11)12)117-84(132)61(25-4)108-92(140)71-36-32-43-123(71)98(146)62(26-5)109-80(128)56(17)104-91(139)70-35-31-42-122(70)99(147)63(27-6)110-82(130)58(19)121(20)21/h24-30,33-34,41,44,50-58,64-71,75-79,124H,22-23,31-32,35-40,42-43,45-49H2,1-21H3,(H2,100,125)(H2,101,126)(H,102,141)(H,103,131)(H,104,139)(H,105,142)(H,106,127)(H,107,137)(H,108,140)(H,109,128)(H,110,130)(H,111,129)(H,112,144)(H,113,138)(H,114,134)(H,115,145)(H,116,135)(H,117,132)(H,118,136)(H,119,133)(H,120,143)/b44-41-,60-24-,61-25-,62-26+,63-27+
InChI KeyTYVRUMCYJWCOOO-RKEGDLLCSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp. OH-4156NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-4.9ChemAxon
pKa (Strongest Acidic)10.83ChemAxon
pKa (Strongest Basic)7.56ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count25ChemAxon
Hydrogen Donor Count22ChemAxon
Polar Surface Area703.17 ŲChemAxon
Rotatable Bond Count53ChemAxon
Refractivity547.76 m³·mol⁻¹ChemAxon
Polarizability221.71 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA012286
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444223
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586517
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Komiyama K, Otoguro K, Segawa T, Shiomi K, Yang H, Takahashi Y, Hayashi M, Otani T, Omura S: A new antibiotic, cypemycin. Taxonomy, fermentation, isolation and biological characteristics. J Antibiot (Tokyo). 1993 Nov;46(11):1666-71. doi: 10.7164/antibiotics.46.1666. [PubMed:7802859 ]