NP-MRD: Showing NP-Card for Ripostatin B (NP0022262)

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Record Information

Version

2.0

Created at

2021-01-06 07:28:24 UTC

Updated at

2021-07-15 17:38:34 UTC

NP-MRD ID

NP0022262

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ripostatin B

Provided By

NPAtlas

Description

Ripostatin B is found in Sorangium. Ripostatin B was first documented in 2012 (PMID: 22378713). Based on a literature review very few articles have been published on 2-[(3E,9Z,12R,14S)-12-hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetic acid (PMID: 29542926) (PMID: 25112727) (PMID: 23967694) (PMID: 22378642) (PMID: 22337614).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108063D          

 76 77  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
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 32 70  1  0
 33 71  1  0
 33 72  1  0
 34 73  1  6
 35 74  1  0
 36 75  1  0
 36 76  1  0
M  END


  Mrv1652307042108063D          

 76 77  0  0  0  0            999 V2000
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    7.4326    1.9633    0.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
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  7  8  1  0  0  0  0
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  9 10  1  0  0  0  0
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  8 13  2  0  0  0  0
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 36 75  1  0  0  0  0
 36 76  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022262

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])C1=C([H])/C(=O)O[C@@]([H])(C([H])([H])[C@]([H])(O[H])C([H])([H])C([H])([H])C(=C(/[H])C([H])([H])C2=C([H])C([H])=C([H])C([H])=C2[H])\C([H])([H])[H])C([H])([H])[C@]([H])(O[H])C([H])([H])\C(=C([H])/C([H])([H])\C([H])=C([H])/C\1([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C30H40O6/c1-22(13-15-24-10-6-4-7-11-24)14-16-26(31)20-28-21-27(32)17-23(2)9-5-3-8-12-25(18-29(33)34)19-30(35)36-28/h3-4,6-11,13,19,26-28,31-32H,5,12,14-18,20-21H2,1-2H3,(H,33,34)/b8-3-,22-13+,23-9-,25-19+/t26-,27-,28+/m1/s1

> <INCHI_KEY>
FFFWIYTVZAPFFC-WTROGODESA-N

> <FORMULA>
C30H40O6

> <MOLECULAR_WEIGHT>
496.644

> <EXACT_MASS>
496.282489008

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
55.88392417405877

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(3E,6Z,9Z,12R,14S)-12-hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetic acid

> <ALOGPS_LOGP>
4.82

> <JCHEM_LOGP>
4.971760175

> <ALOGPS_LOGS>
-4.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.837310871444444

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.0407289460561335

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7263624309294396

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
145.16819999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.38e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3E,6Z,9Z,12R,14S)-12-hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 76 77  0  0  0  0  0  0  0  0999 V2000
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    4.1053    0.2165   -0.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7570    2.2042   -0.4883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6205   -0.0103   -0.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5199    1.1790    1.0841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4757    3.1884    0.8058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3816    3.9950   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3990    4.3725    2.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2165    2.6815   -2.4247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8919   -2.5692   -2.6631 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1299   -1.2355   -3.0623 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3187   -2.5939   -1.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4433   -1.1939    0.0220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0163    0.9177    0.0253 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0460   -0.1458   -2.2879 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4121   -1.6853   -1.3852 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2847    1.2102   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5230   -0.2226    0.7425 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3062    1.5858   -1.7427 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7065    1.1519   -2.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0963    0.0004   -2.5328 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6760   -0.6326    1.1840 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8505   -1.2380   -0.0040 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6388    0.1551   -1.0974 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5550   -1.0294    2.2114 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8203    0.3347    3.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1806    2.7041    3.5521 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2834    3.7921    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0336    2.4261   -0.1338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9893   -1.6729    0.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1466   -3.1222   -0.3217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9911   -4.1725   -1.0272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4828   -3.2043   -2.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0576   -3.5209    0.4581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5885   -4.1735    1.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  8 13  2  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
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 29 30  2  0
 30 31  1  0
 31 32  2  0
 17 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  0
 36  2  1  0
 32 27  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  0
  6 44  1  0
  7 45  1  0
  7 46  1  0
  9 47  1  0
  9 48  1  0
 12 49  1  0
 13 50  1  0
 17 51  1  6
 18 52  1  0
 18 53  1  0
 19 54  1  1
 20 55  1  0
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 21 57  1  0
 22 58  1  0
 22 59  1  0
 24 60  1  0
 24 61  1  0
 24 62  1  0
 25 63  1  0
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 28 66  1  0
 29 67  1  0
 30 68  1  0
 31 69  1  0
 32 70  1  0
 33 71  1  0
 33 72  1  0
 34 73  1  6
 35 74  1  0
 36 75  1  0
 36 76  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -2.660  -2.177   2.572  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.821  -2.163   1.607  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.699  -1.145   1.676  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.855  -1.004   0.813  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.209   0.290   0.281  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.373   1.237  -0.076  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.917   1.006   0.062  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.212   2.045  -0.765  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.092   3.385  -0.130  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.325   4.072   0.160  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.902   4.769  -0.704  0.00  0.00           O+0
HETATM   12  O   UNK     0      -4.906   3.980   1.409  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.692   1.793  -1.957  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.714   0.494  -2.649  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.151   0.613  -3.862  0.00  0.00           O+0
HETATM   16  O   UNK     0      -2.319  -0.605  -2.027  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.656  -1.747  -1.944  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.163  -1.573  -2.032  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.470  -0.736  -0.990  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.067   0.560  -0.883  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.975  -0.689  -1.328  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.665   0.172  -0.274  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.105   0.217  -0.619  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.580   0.763  -1.921  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.992  -0.232   0.235  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.456  -0.207  -0.070  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.205   0.618   0.913  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.717   0.023   2.065  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.413   0.766   2.992  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.630   2.128   2.816  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.126   2.719   1.679  0.00  0.00           C+0
HETATM   32  C   UNK     0       7.433   1.963   0.762  0.00  0.00           C+0
HETATM   33  C   UNK     0      -1.946  -2.398  -0.573  0.00  0.00           C+0
HETATM   34  C   UNK     0      -3.257  -3.134  -0.646  0.00  0.00           C+0
HETATM   35  O   UNK     0      -3.970  -2.573  -1.704  0.00  0.00           O+0
HETATM   36  C   UNK     0      -3.996  -3.238   0.632  0.00  0.00           C+0
HETATM   37  H   UNK     0      -3.102  -2.474   3.566  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.911  -2.914   2.288  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.294  -1.152   2.700  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.522  -0.406   2.439  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.921  -1.745  -0.012  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.741  -1.323   1.473  0.00  0.00           H+0
HETATM   43  H   UNK     0      -7.278   0.550   0.140  0.00  0.00           H+0
HETATM   44  H   UNK     0      -5.757   2.204  -0.488  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.620  -0.010  -0.237  0.00  0.00           H+0
HETATM   46  H   UNK     0      -3.520   1.179   1.084  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.476   3.188   0.806  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.382   3.995  -0.756  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.399   4.372   2.191  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.216   2.682  -2.425  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.892  -2.569  -2.663  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.130  -1.236  -3.062  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.319  -2.594  -1.955  0.00  0.00           H+0
HETATM   54  H   UNK     0       0.443  -1.194   0.022  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.016   0.918   0.025  0.00  0.00           H+0
HETATM   56  H   UNK     0       2.046  -0.146  -2.288  0.00  0.00           H+0
HETATM   57  H   UNK     0       2.412  -1.685  -1.385  0.00  0.00           H+0
HETATM   58  H   UNK     0       2.285   1.210  -0.303  0.00  0.00           H+0
HETATM   59  H   UNK     0       2.523  -0.223   0.743  0.00  0.00           H+0
HETATM   60  H   UNK     0       5.306   1.586  -1.743  0.00  0.00           H+0
HETATM   61  H   UNK     0       3.707   1.152  -2.523  0.00  0.00           H+0
HETATM   62  H   UNK     0       5.096   0.000  -2.533  0.00  0.00           H+0
HETATM   63  H   UNK     0       4.676  -0.633   1.184  0.00  0.00           H+0
HETATM   64  H   UNK     0       6.851  -1.238  -0.004  0.00  0.00           H+0
HETATM   65  H   UNK     0       6.639   0.155  -1.097  0.00  0.00           H+0
HETATM   66  H   UNK     0       7.555  -1.029   2.211  0.00  0.00           H+0
HETATM   67  H   UNK     0       8.820   0.335   3.892  0.00  0.00           H+0
HETATM   68  H   UNK     0       9.181   2.704   3.552  0.00  0.00           H+0
HETATM   69  H   UNK     0       8.283   3.792   1.518  0.00  0.00           H+0
HETATM   70  H   UNK     0       7.034   2.426  -0.134  0.00  0.00           H+0
HETATM   71  H   UNK     0      -1.989  -1.673   0.235  0.00  0.00           H+0
HETATM   72  H   UNK     0      -1.147  -3.122  -0.322  0.00  0.00           H+0
HETATM   73  H   UNK     0      -2.991  -4.173  -1.027  0.00  0.00           H+0
HETATM   74  H   UNK     0      -4.483  -3.204  -2.232  0.00  0.00           H+0
HETATM   75  H   UNK     0      -5.058  -3.521   0.458  0.00  0.00           H+0
HETATM   76  H   UNK     0      -3.588  -4.173   1.140  0.00  0.00           H+0
CONECT    1    2   37   38   39                                             
CONECT    2    1    3   36                                                  
CONECT    3    2    4   40                                                  
CONECT    4    3    5   41   42                                             
CONECT    5    4    6   43                                                  
CONECT    6    5    7   44                                                  
CONECT    7    6    8   45   46                                             
CONECT    8    7    9   13                                                  
CONECT    9    8   10   47   48                                             
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   49                                                       
CONECT   13    8   14   50                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   33   51                                             
CONECT   18   17   19   52   53                                             
CONECT   19   18   20   21   54                                             
CONECT   20   19   55                                                       
CONECT   21   19   22   56   57                                             
CONECT   22   21   23   58   59                                             
CONECT   23   22   24   25                                                  
CONECT   24   23   60   61   62                                             
CONECT   25   23   26   63                                                  
CONECT   26   25   27   64   65                                             
CONECT   27   26   28   32                                                  
CONECT   28   27   29   66                                                  
CONECT   29   28   30   67                                                  
CONECT   30   29   31   68                                                  
CONECT   31   30   32   69                                                  
CONECT   32   31   27   70                                                  
CONECT   33   17   34   71   72                                             
CONECT   34   33   35   36   73                                             
CONECT   35   34   74                                                       
CONECT   36   34    2   75   76                                             
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    3                                                            
CONECT   41    4                                                            
CONECT   42    4                                                            
CONECT   43    5                                                            
CONECT   44    6                                                            
CONECT   45    7                                                            
CONECT   46    7                                                            
CONECT   47    9                                                            
CONECT   48    9                                                            
CONECT   49   12                                                            
CONECT   50   13                                                            
CONECT   51   17                                                            
CONECT   52   18                                                            
CONECT   53   18                                                            
CONECT   54   19                                                            
CONECT   55   20                                                            
CONECT   56   21                                                            
CONECT   57   21                                                            
CONECT   58   22                                                            
CONECT   59   22                                                            
CONECT   60   24                                                            
CONECT   61   24                                                            
CONECT   62   24                                                            
CONECT   63   25                                                            
CONECT   64   26                                                            
CONECT   65   26                                                            
CONECT   66   28                                                            
CONECT   67   29                                                            
CONECT   68   30                                                            
CONECT   69   31                                                            
CONECT   70   32                                                            
CONECT   71   33                                                            
CONECT   72   33                                                            
CONECT   73   34                                                            
CONECT   74   35                                                            
CONECT   75   36                                                            
CONECT   76   36                                                            
MASTER        0    0    0    0    0    0    0    0   76    0  154    0
END

RDKit          3D

76 77  0  0  0  0  0  0  0  0999 V2000
   -2.6600   -2.1772    2.5725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8215   -2.1634    1.6066 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6991   -1.1453    1.6762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8549   -1.0039    0.8133 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2086    0.2900    0.2806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3728    1.2370   -0.0762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9174    1.0060    0.0624 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2120    2.0447   -0.7654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0920    3.3855   -0.1297 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3246    4.0720    0.1600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9020    4.7687   -0.7040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9064    3.9796    1.4094 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6922    1.7931   -1.9566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7144    0.4940   -2.6488 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1510    0.6128   -3.8618 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.6562   -1.7469   -1.9438 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1626   -1.5730   -2.0318 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4701   -0.7362   -0.9896 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0674    0.5601   -0.8827 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6648    0.1717   -0.2740 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1053    0.2165   -0.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5799    0.7628   -1.9213 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9917   -0.2323    0.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4561   -0.2073   -0.0696 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2052    0.6175    0.9134 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7172    0.0232    2.0652 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4129    0.7660    2.9919 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6300    2.1276    2.8156 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1255    2.7187    1.6787 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4326    1.9633    0.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9459   -2.3981   -0.5729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2575   -3.1342   -0.6460 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9700   -2.5730   -1.7036 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9957   -3.2384    0.6322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1019   -2.4738    3.5662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9112   -2.9140    2.2877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2939   -1.1522    2.6995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5216   -0.4057    2.4392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9208   -1.7446   -0.0116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7413   -1.3232    1.4726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2784    0.5503    0.1395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7570    2.2042   -0.4883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6205   -0.0103   -0.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5199    1.1790    1.0841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4757    3.1884    0.8058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3816    3.9950   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3990    4.3725    2.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2165    2.6815   -2.4247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8919   -2.5692   -2.6631 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1299   -1.2355   -3.0623 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3187   -2.5939   -1.9550 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4433   -1.1939    0.0220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0163    0.9177    0.0253 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0460   -0.1458   -2.2879 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4121   -1.6853   -1.3852 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2847    1.2102   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5230   -0.2226    0.7425 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3062    1.5858   -1.7427 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7065    1.1519   -2.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0963    0.0004   -2.5328 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6760   -0.6326    1.1840 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8505   -1.2380   -0.0040 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6388    0.1551   -1.0974 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5550   -1.0294    2.2114 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8203    0.3347    3.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1806    2.7041    3.5521 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2834    3.7921    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0336    2.4261   -0.1338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9893   -1.6729    0.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1466   -3.1222   -0.3217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9911   -4.1725   -1.0272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4828   -3.2043   -2.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0576   -3.5209    0.4581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5885   -4.1735    1.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
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 17 33  1  0
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 32 27  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  0
  6 44  1  0
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  9 47  1  0
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 36 75  1  0
 36 76  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-[(3E,9Z,12R,14S)-12-Hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetate	Generator

Chemical Formula

C₃₀H₄₀O₆

Average Mass

496.6440 Da

Monoisotopic Mass

496.28249 Da

IUPAC Name

2-[(3E,6Z,9Z,12R,14S)-12-hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetic acid

Traditional Name

[(3E,6Z,9Z,12R,14S)-12-hydroxy-14-[(2R,5E)-2-hydroxy-5-methyl-7-phenylhept-5-en-1-yl]-10-methyl-2-oxo-1-oxacyclotetradeca-3,6,9-trien-4-yl]acetic acid

CAS Registry Number

Not Available

SMILES

C\C(CC[C@@H](O)C[C@H]1C[C@H](O)C\C(C)=C/C\C=C/C\C(CC(O)=O)=C/C(=O)O1)=C/CC1=CC=CC=C1

InChI Identifier

InChI=1S/C30H40O6/c1-22(13-15-24-10-6-4-7-11-24)14-16-26(31)20-28-21-27(32)17-23(2)9-5-3-8-12-25(18-29(33)34)19-30(35)36-28/h3-4,6-11,13,19,26-28,31-32H,5,12,14-18,20-21H2,1-2H3,(H,33,34)/b8-3-,22-13+,23-9-,25-19+/t26-,27-,28+/m1/s1

InChI Key

FFFWIYTVZAPFFC-WTROGODESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sorangium	NPAtlas	7592022

Species Where Detected

Species Name	Source	Reference
Polyangium cellulosum So ce377	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.82	ALOGPS
logP	4.97	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	4.04	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	145.17 m³·mol⁻¹	ChemAxon
Polarizability	55.88 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA000250

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

74048252

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101682975

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Glaus F, Dedic D, Tare P, Nagaraja V, Rodrigues L, Ainsa JA, Kunze J, Schneider G, Hartkoorn RC, Cole ST, Altmann KH: Total Synthesis of Ripostatin B and Structure-Activity Relationship Studies on Ripostatin Analogs. J Org Chem. 2018 Jul 6;83(13):7150-7172. doi: 10.1021/acs.joc.8b00193. Epub 2018 Mar 29. [PubMed:29542926 ]
Tang W, Liu S, Degen D, Ebright RH, Prusov EV: Synthesis and evaluation of novel analogues of ripostatins. Chemistry. 2014 Sep 15;20(38):12310-9. doi: 10.1002/chem.201403176. Epub 2014 Aug 11. [PubMed:25112727 ]
Glaus F, Altmann KH: Total synthesis of the myxobacterial macrolide ripostatin B. Chimia (Aarau). 2013;67(4):227-30. doi: 10.2533/chimia.2013.227. [PubMed:23967694 ]
Glaus F, Altmann KH: Total synthesis of the bacterial RNA polymerase inhibitor ripostatin B. Angew Chem Int Ed Engl. 2012 Apr 2;51(14):3405-9. doi: 10.1002/anie.201200871. Epub 2012 Feb 29. [PubMed:22378713 ]
Tang W, Prusov EV: Total synthesis of RNA-polymerase inhibitor ripostatin B and 15-deoxyripostatin A. Angew Chem Int Ed Engl. 2012 Apr 2;51(14):3401-4. doi: 10.1002/anie.201108749. Epub 2012 Feb 29. [PubMed:22378642 ]
Winter P, Hiller W, Christmann M: Access to skipped polyene macrolides through ring-closing metathesis: total synthesis of the RNA polymerase inhibitor ripostatin B. Angew Chem Int Ed Engl. 2012 Apr 2;51(14):3396-400. doi: 10.1002/anie.201108692. Epub 2012 Feb 15. [PubMed:22337614 ]

Showing NP-Card for Ripostatin B (NP0022262)

MOL for NP0022262 (Ripostatin B)

3D MOL for NP0022262 (Ripostatin B)

3D SDF for NP0022262 (Ripostatin B)

3D-SDF for NP0022262 (Ripostatin B)

PDB for NP0022262 (Ripostatin B)

3D PDB for NP0022262 (Ripostatin B)

SMILES for NP0022262 (Ripostatin B)

INCHI for NP0022262 (Ripostatin B)

Structure for NP0022262 (Ripostatin B)

3D Structure for NP0022262 (Ripostatin B)