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Record Information
Version1.0
Created at2021-01-06 07:27:30 UTC
Updated at2021-07-15 17:38:31 UTC
NP-MRD IDNP0022244
Secondary Accession NumbersNone
Natural Product Identification
Common NameCepacidine A2
Provided ByNPAtlasNPAtlas Logo
Description Cepacidine A2 is found in Burkholderia cepacia and Pseudomonas. It was first documented in 1994 (PMID: 7531193). Based on a literature review very few articles have been published on Cepacidine A2 (PMID: 7531194).
Structure
Thumb
Synonyms
ValueSource
Cepacidine aMeSH
2-[25-Amino-19-(6-amino-4-hydroxy-2-{[(3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}pentadecyl)-2,5,8,11,14,17,21,24-octahydroxy-12-[hydroxy(4-hydroxyphenyl)methyl]-22-[(C-hydroxycarbonimidoyl)methyl]-6,15-bis(hydroxymethyl)-1,4,7,10,13,16,20,23-octaazacycloheptacosa-1,4,7,10,13,16,20,23-octaen-9-yl]acetateGenerator
Chemical FormulaC52H85N11O21
Average Mass1200.3080 Da
Monoisotopic Mass1199.59215 Da
IUPAC Name2-[(6S,9S,12S,15R,19S,22R,25S)-25-amino-19-[(2S,4S,6S)-6-amino-4-hydroxy-2-{[(2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}pentadecyl]-22-(carbamoylmethyl)-12-[(R)-hydroxy(4-hydroxyphenyl)methyl]-6,15-bis(hydroxymethyl)-2,5,8,11,14,17,21,24-octaoxo-1,4,7,10,13,16,20,23-octaazacycloheptacosan-9-yl]acetic acid
Traditional Name[(6S,9S,12S,15R,19S,22R,25S)-25-amino-19-[(2S,4S,6S)-6-amino-4-hydroxy-2-{[(2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}pentadecyl]-22-(carbamoylmethyl)-12-[(R)-hydroxy(4-hydroxyphenyl)methyl]-6,15-bis(hydroxymethyl)-2,5,8,11,14,17,21,24-octaoxo-1,4,7,10,13,16,20,23-octaazacycloheptacosan-9-yl]acetic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCC(N)CC(O)CC(CC1CC(=O)NC(CO)C(=O)NC(C(O)C2=CC=C(O)C=C2)C(=O)NC(CC(O)=O)C(=O)NC(CO)C(=O)NCC(=O)NCCC(N)C(=O)NC(CC(N)=O)C(=O)N1)OC1OC[C@@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C52H85N11O21/c1-2-3-4-5-6-7-8-9-27(53)16-30(67)19-31(84-52-45(76)44(75)37(68)25-83-52)17-28-18-39(70)59-36(24-65)50(81)63-42(43(74)26-10-12-29(66)13-11-26)51(82)61-34(21-41(72)73)49(80)62-35(23-64)47(78)57-22-40(71)56-15-14-32(54)46(77)60-33(20-38(55)69)48(79)58-28/h10-13,27-28,30-37,42-45,52,64-68,74-76H,2-9,14-25,53-54H2,1H3,(H2,55,69)(H,56,71)(H,57,78)(H,58,79)(H,59,70)(H,60,77)(H,61,82)(H,62,80)(H,63,81)(H,72,73)/t27?,28?,30?,31?,32?,33?,34?,35?,36?,37-,42?,43?,44+,45-,52?/m1/s1
InChI KeyHWQREZWVXGVHJC-PBLGGKLNSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Burkholderia cepaciaLOTUS Database
PseudomonasNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-2.9ALOGPS
logP-11ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)3.46ChemAxon
pKa (Strongest Basic)10.14ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count23ChemAxon
Hydrogen Donor Count20ChemAxon
Polar Surface Area545.53 ŲChemAxon
Rotatable Bond Count24ChemAxon
Refractivity288.69 m³·mol⁻¹ChemAxon
Polarizability121.72 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA011126
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445421
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586182
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Lee CH, Kim S, Hyun B, Suh JW, Yon C, Kim C, Lim Y, Kim C: Cepacidine A, a novel antifungal antibiotic produced by Pseudomonas cepacia. I. Taxonomy, production, isolation and biological activity. J Antibiot (Tokyo). 1994 Dec;47(12):1402-5. doi: 10.7164/antibiotics.47.1402. [PubMed:7531193 ]
  2. Lim Y, Suh JW, Kim S, Hyun B, Kim C, Lee CH: Cepacidine A, a novel antifungal antibiotic produced by Pseudomonas cepacia. II. Physico-chemical properties and structure elucidation. J Antibiot (Tokyo). 1994 Dec;47(12):1406-16. doi: 10.7164/antibiotics.47.1406. [PubMed:7531194 ]