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Record Information
Version2.0
Created at2021-01-06 07:26:33 UTC
Updated at2021-07-15 17:38:28 UTC
NP-MRD IDNP0022226
Secondary Accession NumbersNone
Natural Product Identification
Common NameHispidospermidin
Provided ByNPAtlasNPAtlas Logo
DescriptionHispidospermidin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Hispidospermidin is found in Chaetosphaeronema, Chaetosphaeronema hispidulum and Chaetosphaeronema hispidulum Moesz NR 7127. Hispidospermidin was first documented in 1994 (PMID: 7509787). Based on a literature review very few articles have been published on hispidospermidin (PMID: 7509786).
Structure
Thumb
Synonyms
ValueSource
(-)-HispidospermidinChEBI
Chemical FormulaC25H47N3O
Average Mass405.6710 Da
Monoisotopic Mass405.37191 Da
IUPAC Name(1S,2R,5S,6S,7S,8R,9R)-N-(4-{[3-(dimethylamino)propyl](methyl)amino}butyl)-2,6,9-trimethyl-13-oxatetracyclo[6.3.1.1^{6,9}.0^{1,5}]tridecan-7-amine
Traditional Name(1S,2R,5S,6S,7S,8R,9R)-N-(4-{[3-(dimethylamino)propyl](methyl)amino}butyl)-2,6,9-trimethyl-13-oxatetracyclo[6.3.1.1^{6,9}.0^{1,5}]tridecan-7-amine
CAS Registry NumberNot Available
SMILES
C[C@@H]1CC[C@@H]2[C@]3(C)O[C@]4(C)CC[C@]12C[C@@H]4[C@@H]3NCCCCN(C)CCCN(C)C
InChI Identifier
InChI=1S/C25H47N3O/c1-19-10-11-21-24(3)22(20-18-25(19,21)13-12-23(20,2)29-24)26-14-7-8-16-28(6)17-9-15-27(4)5/h19-22,26H,7-18H2,1-6H3/t19-,20-,21-,22+,23-,24+,25+/m1/s1
InChI KeyJIRJLWLQLDLWSW-XNDBBLGPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
ChaetosphaeronemaNPAtlas
Chaetosphaeronema hispidulumLOTUS Database
Chaetosphaeronema hispidulum Moesz NR 7127-
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.58ALOGPS
logP3.15ChemAxon
logS-4.8ALOGPS
pKa (Strongest Basic)10.61ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area27.74 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity122.93 m³·mol⁻¹ChemAxon
Polarizability48.89 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA016610
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00016926
Chemspider ID24693801
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11090783
PDB IDNot Available
ChEBI ID66017
Good Scents IDNot Available
References
General References
  1. Ohtsuka T, Itezono Y, Nakayama N, Sakai A, Shimma N, Yokose K, Seto H: Hispidospermidin, a novel phospholipase C inhibitor produced by Chaetosphaeronema hispidulum (Cda) Moesz NR 7127. II. Isolation, characterization and structural elucidation. J Antibiot (Tokyo). 1994 Jan;47(1):6-15. doi: 10.7164/antibiotics.47.6. [PubMed:7509787 ]
  2. Yanagisawa M, Sakai A, Adachi K, Sano T, Watanabe K, Tanaka Y, Okuda T: Hispidospermidin, a novel phospholipase C inhibitor produced by Chaetosphaeronema hispidulum (Cda) Moesz NR 7127. I. Screening, taxonomy, and fermentation. J Antibiot (Tokyo). 1994 Jan;47(1):1-5. doi: 10.7164/antibiotics.47.1. [PubMed:7509786 ]