NP-MRD: Showing NP-Card for Gilvocarcin M (NP0022145)

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Record Information

Version

2.0

Created at

2021-01-06 07:22:02 UTC

Updated at

2021-07-15 17:38:15 UTC

NP-MRD ID

NP0022145

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gilvocarcin M

Provided By

NPAtlas

Description

Gilvocarcin M is found in Streptomyces anandii. Based on a literature review a small amount of articles have been published on Gilvocarcin M.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105213D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242105213D          

 61 65  0  0  0  0            999 V2000
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 15 16  1  0  0  0  0
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 32 60  1  0  0  0  0
 34 61  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022145

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(OC([H])([H])[H])=C([H])C3=C(OC(=O)C4=C([H])C(=C([H])C(OC([H])([H])[H])=C34)C([H])([H])[H])C2=C(C([H])=C1[H])[C@@]1([H])O[C@@]([H])([C@]([H])(O[H])C([H])([H])[H])[C@]([H])(O[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C26H26O9/c1-10-7-14-18(16(8-10)32-3)13-9-17(33-4)20-15(28)6-5-12(19(20)24(13)35-26(14)31)25-22(30)21(29)23(34-25)11(2)27/h5-9,11,21-23,25,27-30H,1-4H3/t11-,21-,22-,23+,25-/m1/s1

> <INCHI_KEY>
BYFOTBZTKXSZHH-FUCVEXJHSA-N

> <FORMULA>
C26H26O9

> <MOLECULAR_WEIGHT>
482.485

> <EXACT_MASS>
482.157682417

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
50.87650136075089

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
12-[(2R,3R,4R,5S)-3,4-dihydroxy-5-[(1R)-1-hydroxyethyl]oxolan-2-yl]-15-hydroxy-3,17-dimethoxy-5-methyl-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

> <ALOGPS_LOGP>
2.25

> <JCHEM_LOGP>
2.098906796

> <ALOGPS_LOGS>
-3.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.73721767419216

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.522826963564917

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0537466829921094

> <JCHEM_POLAR_SURFACE_AREA>
134.91000000000003

> <JCHEM_REFRACTIVITY>
124.91239999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.02e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
12-[(2R,3R,4R,5S)-3,4-dihydroxy-5-[(1R)-1-hydroxyethyl]oxolan-2-yl]-15-hydroxy-3,17-dimethoxy-5-methyl-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 61 65  0  0  0  0  0  0  0  0999 V2000
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   -2.1269   -4.3552    1.3504 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2084   -5.2043    1.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
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  3  4  2  0
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 23 24  1  0
 24 25  1  0
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 31 32  2  0
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 33 34  1  0
 33 35  2  0
 35  3  1  0
 18  5  1  0
 35 19  1  0
 18 10  1  0
 29 21  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
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 11 40  1  0
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 30 58  1  0
 31 59  1  0
 32 60  1  0
 34 61  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       3.962  -3.845   0.842  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.572  -3.688   0.789  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.900  -2.512   0.493  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.632  -1.352   0.197  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.965  -0.208  -0.089  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.550  -0.171  -0.089  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.123   0.886  -0.348  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.455   2.018  -0.628  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.204   3.040  -0.880  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.856   2.083  -0.650  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.471   3.279  -0.951  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.832   3.343  -0.974  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.488   4.649  -1.323  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.586   2.229  -0.699  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001   1.004  -0.395  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.804  -0.045  -0.131  0.00  0.00           O+0
HETATM   17  C   UNK     0       6.177  -0.170  -0.113  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.612   0.971  -0.380  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.155  -1.325   0.207  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.548  -1.171   0.309  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.270   0.027  -0.172  0.00  0.00           C+0
HETATM   22  O   UNK     0      -3.513  -0.620  -0.711  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.463   0.375  -0.774  0.00  0.00           C+0
HETATM   24  C   UNK     0      -5.755  -0.105  -0.172  0.00  0.00           C+0
HETATM   25  C   UNK     0      -6.787   0.950   0.081  0.00  0.00           C+0
HETATM   26  O   UNK     0      -6.339  -1.186  -0.890  0.00  0.00           O+0
HETATM   27  C   UNK     0      -3.975   1.544   0.084  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.263   2.426  -0.758  0.00  0.00           O+0
HETATM   29  C   UNK     0      -3.014   0.744   0.924  0.00  0.00           C+0
HETATM   30  O   UNK     0      -3.682  -0.099   1.758  0.00  0.00           O+0
HETATM   31  C   UNK     0      -2.206  -2.321   0.737  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.581  -3.482   1.026  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.189  -3.588   0.907  0.00  0.00           C+0
HETATM   34  O   UNK     0       0.345  -4.797   1.217  0.00  0.00           O+0
HETATM   35  C   UNK     0       0.518  -2.471   0.491  0.00  0.00           C+0
HETATM   36  H   UNK     0       4.492  -3.271   0.073  0.00  0.00           H+0
HETATM   37  H   UNK     0       4.267  -4.920   0.761  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.304  -3.448   1.861  0.00  0.00           H+0
HETATM   39  H   UNK     0       3.679  -1.437   0.219  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.833   4.129  -1.154  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.754   5.438  -1.172  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.706   4.563  -2.444  0.00  0.00           H+0
HETATM   43  H   UNK     0       5.449   4.806  -0.784  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.652   2.350  -0.730  0.00  0.00           H+0
HETATM   45  H   UNK     0       6.465  -0.677   0.863  0.00  0.00           H+0
HETATM   46  H   UNK     0       6.731   0.783  -0.108  0.00  0.00           H+0
HETATM   47  H   UNK     0       6.504  -0.840  -0.949  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.011   0.515  -1.061  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.619   0.732  -1.829  0.00  0.00           H+0
HETATM   50  H   UNK     0      -5.577  -0.589   0.836  0.00  0.00           H+0
HETATM   51  H   UNK     0      -6.668   1.387   1.120  0.00  0.00           H+0
HETATM   52  H   UNK     0      -7.802   0.471   0.132  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.837   1.756  -0.648  0.00  0.00           H+0
HETATM   54  H   UNK     0      -7.103  -1.532  -0.355  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.766   2.041   0.625  0.00  0.00           H+0
HETATM   56  H   UNK     0      -3.350   2.182  -1.721  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.351   1.399   1.540  0.00  0.00           H+0
HETATM   58  H   UNK     0      -3.205  -0.389   2.550  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.292  -2.299   0.841  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.127  -4.355   1.350  0.00  0.00           H+0
HETATM   61  H   UNK     0       1.208  -5.204   1.245  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   35                                                  
CONECT    4    3    5   39                                                  
CONECT    5    4    6   18                                                  
CONECT    6    5    7   19                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   18                                                  
CONECT   11   10   12   40                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   41   42   43                                             
CONECT   14   12   15   44                                                  
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16   45   46   47                                             
CONECT   18   15    5   10                                                  
CONECT   19    6   20   35                                                  
CONECT   20   19   21   31                                                  
CONECT   21   20   22   29   48                                             
CONECT   22   21   23                                                       
CONECT   23   22   24   27   49                                             
CONECT   24   23   25   26   50                                             
CONECT   25   24   51   52   53                                             
CONECT   26   24   54                                                       
CONECT   27   23   28   29   55                                             
CONECT   28   27   56                                                       
CONECT   29   27   30   21   57                                             
CONECT   30   29   58                                                       
CONECT   31   20   32   59                                                  
CONECT   32   31   33   60                                                  
CONECT   33   32   34   35                                                  
CONECT   34   33   61                                                       
CONECT   35   33    3   19                                                  
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    4                                                            
CONECT   40   11                                                            
CONECT   41   13                                                            
CONECT   42   13                                                            
CONECT   43   13                                                            
CONECT   44   14                                                            
CONECT   45   17                                                            
CONECT   46   17                                                            
CONECT   47   17                                                            
CONECT   48   21                                                            
CONECT   49   23                                                            
CONECT   50   24                                                            
CONECT   51   25                                                            
CONECT   52   25                                                            
CONECT   53   25                                                            
CONECT   54   26                                                            
CONECT   55   27                                                            
CONECT   56   28                                                            
CONECT   57   29                                                            
CONECT   58   30                                                            
CONECT   59   31                                                            
CONECT   60   32                                                            
CONECT   61   34                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  130    0
END

RDKit          3D

61 65  0  0  0  0  0  0  0  0999 V2000
    3.9624   -3.8445    0.8423 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5719   -3.6875    0.7890 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9004   -2.5120    0.4934 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6324   -1.3524    0.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9650   -0.2081   -0.0890 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5500   -0.1705   -0.0892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1225    0.8857   -0.3477 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4554    2.0178   -0.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2038    3.0397   -0.8801 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8561    2.0826   -0.6496 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4714    3.2786   -0.9512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8323    3.3432   -0.9738 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4883    4.6486   -1.3230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5863    2.2287   -0.6991 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0014    1.0045   -0.3948 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8040   -0.0449   -0.1312 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1767   -0.1698   -0.1131 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6125    0.9706   -0.3796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1552   -1.3253    0.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -1.1714    0.3094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2700    0.0267   -0.1715 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5134   -0.6198   -0.7108 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4628    0.3754   -0.7735 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7549   -0.1053   -0.1719 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.7870    0.9498    0.0810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3393   -1.1862   -0.8899 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.5435    0.0837 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2625    2.4255   -0.7580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0145    0.7441    0.9239 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6817   -0.0994    1.7577 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2057   -2.3206    0.7374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5810   -3.4819    1.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1887   -3.5882    0.9074 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3449   -4.7967    1.2174 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5183   -2.4713    0.4912 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4922   -3.2710    0.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2668   -4.9198    0.7606 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3044   -3.4479    1.8615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6787   -1.4369    0.2189 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8331    4.1288   -1.1544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7543    5.4376   -1.1722 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7060    4.5631   -2.4440 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4493    4.8064   -0.7839 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6520    2.3497   -0.7297 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4649   -0.6772    0.8627 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7311    0.7827   -0.1076 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5037   -0.8395   -0.9491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0106    0.5145   -1.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6191    0.7317   -1.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5773   -0.5887    0.8355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6685    1.3873    1.1197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8021    0.4712    0.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8371    1.7561   -0.6475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1027   -1.5316   -0.3546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7660    2.0407    0.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3498    2.1818   -1.7206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3513    1.3985    1.5401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2052   -0.3889    2.5503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2919   -2.2988    0.8410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1269   -4.3552    1.3504 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2084   -5.2043    1.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  2  0
  6 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 23 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 20 31  1  0
 31 32  2  0
 32 33  1  0
 33 34  1  0
 33 35  2  0
 35  3  1  0
 18  5  1  0
 35 19  1  0
 18 10  1  0
 29 21  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  4 39  1  0
 11 40  1  0
 13 41  1  0
 13 42  1  0
 13 43  1  0
 14 44  1  0
 17 45  1  0
 17 46  1  0
 17 47  1  0
 21 48  1  6
 23 49  1  6
 24 50  1  1
 25 51  1  0
 25 52  1  0
 25 53  1  0
 26 54  1  0
 27 55  1  1
 28 56  1  0
 29 57  1  1
 30 58  1  0
 31 59  1  0
 32 60  1  0
 34 61  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
4-Fucofuranosyl 1-hydroxy-10,12-dimethoxy-8-vinyl-6H-benz(D)naphtho(1,2b)pyran-6-one 8-methyl ester	MeSH

Chemical Formula

C₂₆H₂₆O₉

Average Mass

482.4850 Da

Monoisotopic Mass

482.15768 Da

IUPAC Name

12-[(2R,3R,4R,5S)-3,4-dihydroxy-5-[(1R)-1-hydroxyethyl]oxolan-2-yl]-15-hydroxy-3,17-dimethoxy-5-methyl-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

Traditional Name

12-[(2R,3R,4R,5S)-3,4-dihydroxy-5-[(1R)-1-hydroxyethyl]oxolan-2-yl]-15-hydroxy-3,17-dimethoxy-5-methyl-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

CAS Registry Number

Not Available

SMILES

COC1=C2C(=CC(C)=C1)C(=O)OC1=C3C(=CC=C(O)C3=C(OC)C=C21)[C@H]1O[C@@H]([C@@H](C)O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C26H26O9/c1-10-7-14-18(16(8-10)32-3)13-9-17(33-4)20-15(28)6-5-12(19(20)24(13)35-26(14)31)25-22(30)21(29)23(34-25)11(2)27/h5-9,11,21-23,25,27-30H,1-4H3/t11-,21-,22-,23+,25-/m1/s1

InChI Key

BYFOTBZTKXSZHH-FUCVEXJHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces anandii	NPAtlas	7344705

Species Where Detected

Species Name	Source	Reference
Streptomyces anandii C-22437	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.25	ALOGPS
logP	2.1	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	8.52	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	134.91 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	124.91 m³·mol⁻¹	ChemAxon
Polarizability	50.88 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA028964

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018389

Chemspider ID

9093085

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10917833

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Gilvocarcin M (NP0022145)

MOL for NP0022145 (Gilvocarcin M)

3D MOL for NP0022145 (Gilvocarcin M)

3D SDF for NP0022145 (Gilvocarcin M)

3D-SDF for NP0022145 (Gilvocarcin M)

PDB for NP0022145 (Gilvocarcin M)

3D PDB for NP0022145 (Gilvocarcin M)

SMILES for NP0022145 (Gilvocarcin M)

INCHI for NP0022145 (Gilvocarcin M)

Structure for NP0022145 (Gilvocarcin M)

3D Structure for NP0022145 (Gilvocarcin M)