NP-MRD: Showing NP-Card for Oxanosine (NP0022140)

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Record Information

Version

2.0

Created at

2021-01-06 07:21:45 UTC

Updated at

2021-07-15 17:38:14 UTC

NP-MRD ID

NP0022140

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Oxanosine

Provided By

NPAtlas

Description

Oxanosine is found in Streptomyces and Streptomyces capreolus MG265-CF3. Oxanosine was first documented in 1981 (PMID: 7328060). Based on a literature review a small amount of articles have been published on Oxanosine (PMID: 30746940) (PMID: 16359173) (PMID: 15898783) (PMID: 15740935).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105213D          

 32 34  0  0  0  0            999 V2000
    3.3275    1.9303    1.7556 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378    0.9663    0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9050    0.6270    0.2967 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299   -0.2663   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8399   -0.8640   -1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3671   -1.7103   -2.1487 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0256   -1.6406   -2.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6165   -0.7500   -1.2325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.4183   -0.9583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9547    0.9062   -0.6240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2520    0.9660   -0.1795 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4797    1.9899    0.8977 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6823    1.6868    1.9865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338   -0.3821    0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5055   -0.9748   -0.5532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3094   -1.1402    0.2452 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5080   -2.4835    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -0.5153   -0.7863 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0983   -1.0693   -1.3158 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1772    0.3747    0.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7283    2.8435    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0609    1.6970    2.7170 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3996   -2.2315   -2.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3999   -0.6650   -1.8170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9082    1.2604   -1.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    3.0267    0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5536    1.9146    1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891    1.1334    2.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.3639    1.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -1.9195   -0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6883   -0.9491    1.1556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6865   -2.9792    0.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
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  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20  2  1  0  0  0  0
  8  4  1  0  0  0  0
 16  9  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  7 23  1  0  0  0  0
  9 24  1  6  0  0  0
 11 25  1  6  0  0  0
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 13 28  1  0  0  0  0
 14 29  1  1  0  0  0
 15 30  1  0  0  0  0
 16 31  1  1  0  0  0
 17 32  1  0  0  0  0
M  END

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
    3.3275    1.9303    1.7556 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378    0.9663    0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9050    0.6270    0.2967 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299   -0.2663   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8399   -0.8640   -1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3671   -1.7103   -2.1487 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0256   -1.6406   -2.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6165   -0.7500   -1.2325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.4183   -0.9583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9547    0.9062   -0.6240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2520    0.9660   -0.1795 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4797    1.9899    0.8977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823    1.6868    1.9865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338   -0.3821    0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5055   -0.9748   -0.5532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3094   -1.1402    0.2452 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5080   -2.4835    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -0.5153   -0.7863 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0983   -1.0693   -1.3158 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1772    0.3747    0.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7283    2.8435    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0609    1.6970    2.7170 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3996   -2.2315   -2.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3999   -0.6650   -1.8170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9082    1.2604   -1.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    3.0267    0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5536    1.9146    1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891    1.1334    2.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.3639    1.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -1.9195   -0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6883   -0.9491    1.1556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6865   -2.9792    0.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
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 11 14  1  0
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  5 18  1  0
 18 19  2  0
 18 20  1  0
 20  2  1  0
  8  4  1  0
 16  9  1  0
  1 21  1  0
  1 22  1  0
  7 23  1  0
  9 24  1  6
 11 25  1  6
 12 26  1  0
 12 27  1  0
 13 28  1  0
 14 29  1  1
 15 30  1  0
 16 31  1  1
 17 32  1  0
M  END


  Mrv1652306242105213D          

 32 34  0  0  0  0            999 V2000
    3.3275    1.9303    1.7556 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378    0.9663    0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9050    0.6270    0.2967 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299   -0.2663   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8399   -0.8640   -1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3671   -1.7103   -2.1487 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0256   -1.6406   -2.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6165   -0.7500   -1.2325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.4183   -0.9583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9547    0.9062   -0.6240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2520    0.9660   -0.1795 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4797    1.9899    0.8977 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6823    1.6868    1.9865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338   -0.3821    0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5055   -0.9748   -0.5532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3094   -1.1402    0.2452 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5080   -2.4835    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -0.5153   -0.7863 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0983   -1.0693   -1.3158 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1772    0.3747    0.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7283    2.8435    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0609    1.6970    2.7170 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3996   -2.2315   -2.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3999   -0.6650   -1.8170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9082    1.2604   -1.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    3.0267    0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5536    1.9146    1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891    1.1334    2.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.3639    1.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -1.9195   -0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6883   -0.9491    1.1556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6865   -2.9792    0.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20  2  1  0  0  0  0
  8  4  1  0  0  0  0
 16  9  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  7 23  1  0  0  0  0
  9 24  1  6  0  0  0
 11 25  1  6  0  0  0
 12 26  1  0  0  0  0
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 13 28  1  0  0  0  0
 14 29  1  1  0  0  0
 15 30  1  0  0  0  0
 16 31  1  1  0  0  0
 17 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022140

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@@]1([H])O[C@@]([H])(N2C([H])=NC3=C2N=C(OC3=O)N([H])[H])[C@]([H])(O[H])[C@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C10H12N4O6/c11-10-13-7-4(9(18)20-10)12-2-14(7)8-6(17)5(16)3(1-15)19-8/h2-3,5-6,8,15-17H,1H2,(H2,11,13)/t3-,5-,6-,8-/m1/s1

> <INCHI_KEY>
PWVUOVPUCZNICU-ZIYNGMLESA-N

> <FORMULA>
C10H12N4O6

> <MOLECULAR_WEIGHT>
284.228

> <EXACT_MASS>
284.075684122

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
25.269157844405363

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-amino-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H,7H-imidazo[4,5-d][1,3]oxazin-7-one

> <ALOGPS_LOGP>
-1.84

> <JCHEM_LOGP>
-1.9770575920000002

> <ALOGPS_LOGS>
-1.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.891225177476908

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.45400114039581

> <JCHEM_PKA_STRONGEST_BASIC>
0.7663310530551588

> <JCHEM_POLAR_SURFACE_AREA>
152.42

> <JCHEM_REFRACTIVITY>
62.6713

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.63e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-amino-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]imidazo[4,5-d][1,3]oxazin-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
    3.3275    1.9303    1.7556 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378    0.9663    0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9050    0.6270    0.2967 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299   -0.2663   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8399   -0.8640   -1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3671   -1.7103   -2.1487 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0256   -1.6406   -2.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6165   -0.7500   -1.2325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.4183   -0.9583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9547    0.9062   -0.6240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2520    0.9660   -0.1795 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4797    1.9899    0.8977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823    1.6868    1.9865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338   -0.3821    0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5055   -0.9748   -0.5532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3094   -1.1402    0.2452 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5080   -2.4835    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -0.5153   -0.7863 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0983   -1.0693   -1.3158 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1772    0.3747    0.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7283    2.8435    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0609    1.6970    2.7170 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3996   -2.2315   -2.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3999   -0.6650   -1.8170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9082    1.2604   -1.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    3.0267    0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5536    1.9146    1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891    1.1334    2.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.3639    1.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -1.9195   -0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6883   -0.9491    1.1556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6865   -2.9792    0.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 18 20  1  0
 20  2  1  0
  8  4  1  0
 16  9  1  0
  1 21  1  0
  1 22  1  0
  7 23  1  0
  9 24  1  6
 11 25  1  6
 12 26  1  0
 12 27  1  0
 13 28  1  0
 14 29  1  1
 15 30  1  0
 16 31  1  1
 17 32  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       3.328   1.930   1.756  0.00  0.00           N+0
HETATM    2  C   UNK     0       3.138   0.966   0.726  0.00  0.00           C+0
HETATM    3  N   UNK     0       1.905   0.627   0.297  0.00  0.00           N+0
HETATM    4  C   UNK     0       1.730  -0.266  -0.658  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.840  -0.864  -1.227  0.00  0.00           C+0
HETATM    6  N   UNK     0       2.367  -1.710  -2.149  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.026  -1.641  -2.151  0.00  0.00           C+0
HETATM    8  N   UNK     0       0.617  -0.750  -1.232  0.00  0.00           N+0
HETATM    9  C   UNK     0      -0.733  -0.418  -0.958  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.955   0.906  -0.624  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.252   0.966  -0.180  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.480   1.990   0.898  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.682   1.687   1.986  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.634  -0.382   0.357  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.506  -0.975  -0.553  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.309  -1.140   0.245  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.508  -2.483   0.007  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.106  -0.515  -0.786  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.098  -1.069  -1.316  0.00  0.00           O+0
HETATM   20  O   UNK     0       4.177   0.375   0.159  0.00  0.00           O+0
HETATM   21  H   UNK     0       3.728   2.844   1.518  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.061   1.697   2.717  0.00  0.00           H+0
HETATM   23  H   UNK     0       0.400  -2.232  -2.812  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.400  -0.665  -1.817  0.00  0.00           H+0
HETATM   25  H   UNK     0      -2.908   1.260  -1.047  0.00  0.00           H+0
HETATM   26  H   UNK     0      -2.323   3.027   0.526  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.554   1.915   1.193  0.00  0.00           H+0
HETATM   28  H   UNK     0      -2.189   1.133   2.652  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.021  -0.364   1.378  0.00  0.00           H+0
HETATM   30  H   UNK     0      -3.692  -1.920  -0.346  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.688  -0.949   1.156  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.687  -2.979   0.286  0.00  0.00           H+0
CONECT    1    2   21   22                                                  
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    8                                                  
CONECT    5    4    6   18                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   23                                                  
CONECT    8    7    9    4                                                  
CONECT    9    8   10   16   24                                             
CONECT   10    9   11                                                       
CONECT   11   10   12   14   25                                             
CONECT   12   11   13   26   27                                             
CONECT   13   12   28                                                       
CONECT   14   11   15   16   29                                             
CONECT   15   14   30                                                       
CONECT   16   14   17    9   31                                             
CONECT   17   16   32                                                       
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    2                                                       
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    7                                                            
CONECT   24    9                                                            
CONECT   25   11                                                            
CONECT   26   12                                                            
CONECT   27   12                                                            
CONECT   28   13                                                            
CONECT   29   14                                                            
CONECT   30   15                                                            
CONECT   31   16                                                            
CONECT   32   17                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

RDKit          3D

32 34  0  0  0  0  0  0  0  0999 V2000
    3.3275    1.9303    1.7556 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1378    0.9663    0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9050    0.6270    0.2967 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7299   -0.2663   -0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8399   -0.8640   -1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3671   -1.7103   -2.1487 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0256   -1.6406   -2.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6165   -0.7500   -1.2325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.4183   -0.9583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9547    0.9062   -0.6240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2520    0.9660   -0.1795 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4797    1.9899    0.8977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6823    1.6868    1.9865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338   -0.3821    0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5055   -0.9748   -0.5532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3094   -1.1402    0.2452 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5080   -2.4835    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -0.5153   -0.7863 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0983   -1.0693   -1.3158 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1772    0.3747    0.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7283    2.8435    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0609    1.6970    2.7170 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3996   -2.2315   -2.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3999   -0.6650   -1.8170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9082    1.2604   -1.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3231    3.0267    0.5257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5536    1.9146    1.1927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891    1.1334    2.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.3639    1.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6919   -1.9195   -0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6883   -0.9491    1.1556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6865   -2.9792    0.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 18 20  1  0
 20  2  1  0
  8  4  1  0
 16  9  1  0
  1 21  1  0
  1 22  1  0
  7 23  1  0
  9 24  1  6
 11 25  1  6
 12 26  1  0
 12 27  1  0
 13 28  1  0
 14 29  1  1
 15 30  1  0
 16 31  1  1
 17 32  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
5-Amino-3-beta-D-ribofuranosyl-3H-imidazo(4,5-D)(1,3)oxazin-7-one	MeSH

Chemical Formula

C₁₀H₁₂N₄O₆

Average Mass

284.2280 Da

Monoisotopic Mass

284.07568 Da

IUPAC Name

5-amino-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H,7H-imidazo[4,5-d][1,3]oxazin-7-one

Traditional Name

5-amino-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]imidazo[4,5-d][1,3]oxazin-7-one

CAS Registry Number

Not Available

SMILES

NC1=NC2=C(N=CN2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)C(=O)O1

InChI Identifier

InChI=1S/C10H12N4O6/c11-10-13-7-4(9(18)20-10)12-2-14(7)8-6(17)5(16)3(1-15)19-8/h2-3,5-6,8,15-17H,1H2,(H2,11,13)/t3-,5-,6-,8-/m1/s1

InChI Key

PWVUOVPUCZNICU-ZIYNGMLESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	7328060
Streptomyces capreolus MG265-CF3	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.8	ALOGPS
logP	-2	ChemAxon
logS	-1.2	ALOGPS
pKa (Strongest Acidic)	12.45	ChemAxon
pKa (Strongest Basic)	0.77	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	152.42 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	62.67 m³·mol⁻¹	ChemAxon
Polarizability	25.27 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA021021

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018365

Chemspider ID

419171

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

477547

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shimada N, Yagisawa N, Naganawa H, Takita T, Hamada M, Takeuchi T, Umezawa H: Oxanosine, a novel nucleoside from actinomycetes. J Antibiot (Tokyo). 1981 Sep;34(9):1216-8. doi: 10.7164/antibiotics.34.1216. [PubMed:7328060 ]
Yu R, Kim Y, Maltseva N, Braunstein P, Joachimiak A, Hedstrom L: Oxanosine Monophosphate Is a Covalent Inhibitor of Inosine 5'-Monophosphate Dehydrogenase. Chem Res Toxicol. 2019 Mar 18;32(3):456-466. doi: 10.1021/acs.chemrestox.8b00342. Epub 2019 Feb 25. [PubMed:30746940 ]
Majumdar P, Wu H, Tipton P, Glaser R: Oxanosine is a substrate of adenosine deaminase. Implications for the quest for a toxicological marker for nitrosation activity. Chem Res Toxicol. 2005 Dec;18(12):1830-41. doi: 10.1021/tx050232h. [PubMed:16359173 ]
Glaser R, Wu H, Lewis M: Cytosine catalysis of nitrosative guanine deamination and interstrand cross-link formation. J Am Chem Soc. 2005 May 25;127(20):7346-58. doi: 10.1021/ja0501159. [PubMed:15898783 ]
Nakamura M, Ogawa T, Yokono A, Nakamori S, Ohno T, Umezawa K: Synergistic anti-viral effect of oxanosine and ddI against human immunodeficiency virus. Biomed Pharmacother. 2005 Jan-Feb;59(1-2):47-50. doi: 10.1016/j.biopha.2004.05.017. Epub 2005 Jan 26. [PubMed:15740935 ]

Showing NP-Card for Oxanosine (NP0022140)

MOL for NP0022140 (Oxanosine)

3D MOL for NP0022140 (Oxanosine)

3D SDF for NP0022140 (Oxanosine)

3D-SDF for NP0022140 (Oxanosine)

PDB for NP0022140 (Oxanosine)

3D PDB for NP0022140 (Oxanosine)

SMILES for NP0022140 (Oxanosine)

INCHI for NP0022140 (Oxanosine)

Structure for NP0022140 (Oxanosine)

3D Structure for NP0022140 (Oxanosine)